PDB Chemical Component ST5

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ST5

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C'	O1'	1.250	1.216
C'	O2'	1.251	1.347
C'	C1	1.397	1.474
O2'	HO2'	0.950	0.967
C1	C2	1.394	1.397
C1	C6	1.390	1.397
C2	C3	1.395	1.382
C2	H2	1.102	1.079
C3	N3	1.386	1.401
C3	C4	1.403	1.396
N3	C3'	1.333	1.347
N3	HN3	0.980	0.969
C3'	O3	1.230	1.213
C3'	CM3	1.513	1.507
CM3	O3'	1.422	1.428
CM3	HM31	0.980	1.091
CM3	HM32	0.976	1.089
O3'	HO3	0.960	0.967
C4	N4	1.385	1.396
C4	C5	1.388	1.390
N4	C4'	1.334	1.348
N4	HN4	0.979	0.969
C4'	O4	1.235	1.212
C4'	CM4	1.516	1.507
CM4	HM41	1.115	1.090
CM4	HM42	1.116	1.088
CM4	HM43	1.115	1.089
C5	C6	1.387	1.377
C5	H5	1.103	1.081
C6	H6	1.104	1.081

Bond Angles for ST5

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1'	C'	O2'	122.1	120.0
O1'	C'	C1	119.2	120.0
O2'	C'	C1	118.7	120.0
C'	O2'	HO2'	122.0	120.0
C'	C1	C2	120.8	120.0
C'	C1	C6	120.8	120.1
C2	C1	C6	118.4	119.9
C1	C2	C3	121.4	119.8
C1	C2	H2	119.3	120.0
C1	C6	C5	120.9	120.1
C1	C6	H6	119.7	120.0
C3	C2	H2	119.3	120.1
C2	C3	N3	119.3	120.0
C2	C3	C4	119.3	120.0
N3	C3	C4	121.2	120.0
C3	N3	C3'	120.0	120.0
C3	N3	HN3	119.3	120.0
C3	C4	N4	121.7	120.0
C3	C4	C5	119.3	120.1
C3'	N3	HN3	119.9	120.0
N3	C3'	O3	122.9	120.0
N3	C3'	CM3	117.4	120.1
O3	C3'	CM3	119.7	119.9
C3'	CM3	O3'	109.8	109.6
C3'	CM3	HM31	109.5	109.4
C3'	CM3	HM32	109.4	109.5
O3'	CM3	HM31	109.4	109.4
O3'	CM3	HM32	109.4	109.5
CM3	O3'	HO3	110.9	106.9
HM31	CM3	HM32	109.4	109.4
N4	C4	C5	119.0	120.0
C4	N4	C4'	121.5	120.0
C4	N4	HN4	118.9	120.0
C4	C5	C6	120.7	120.1
C4	C5	H5	119.7	120.0
C4'	N4	HN4	119.6	120.0
N4	C4'	O4	121.8	120.0
N4	C4'	CM4	119.4	120.0
O4	C4'	CM4	118.7	120.0
C4'	CM4	HM41	119.4	109.5
C4'	CM4	HM42	108.7	109.5
C4'	CM4	HM43	108.6	109.5
HM41	CM4	HM42	108.6	109.5
HM41	CM4	HM43	108.7	109.4
HM42	CM4	HM43	101.3	109.5
C6	C5	H5	119.6	119.9
C5	C6	H6	119.4	119.9

Torsion Angles for ST5

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O2'	C'	O1'	C1	181.5	180.1
O1'	C'	O2'	HO2'	180.0	0.0
O1'	C'	C1	C2	161.7	0.0
O1'	C'	C1	C6	340.2	180.0
O1'	C'	O2'	C1	178.5	179.9
O2'	C'	C1	C2	340.2	180.0
O2'	C'	C1	C6	158.8	359.9
O1'	C'	C1	O2'	181.5	180.1
C1	C'	O2'	HO2'	1.5	180.1
C2	C1	C'	C6	181.4	180.0
C'	C1	C2	C3	178.7	179.7
C'	C1	C2	H2	358.7	360.0
C'	C1	C6	C5	181.3	180.0
C'	C1	C6	H6	1.3	0.0
HO2'	O2'	C'	C1	1.5	180.1
C'	C1	C2	C6	178.6	180.0
C2	C1	C6	C5	359.9	0.0
C2	C1	C6	H6	180.0	180.0
C3	C2	C1	H2	180.0	179.7
C1	C2	C3	N3	176.2	180.0
C1	C2	C3	C4	359.7	0.6
C'	C1	C6	C2	181.4	180.0
C6	C1	C2	C3	0.1	359.7
C6	C1	C2	H2	180.1	180.0
C4	C5	C6	C1	0.2	360.0
C1	C6	C5	H5	180.2	180.0
C5	C6	C1	H6	180.0	180.0
C3	C2	C1	C6	0.1	359.7
C1	C2	C3	H2	180.0	180.3
N3	C3	C2	C4	176.5	179.4
C2	C3	N3	C3'	299.5	335.4
C2	C3	N3	HN3	130.0	155.4
C2	C3	C4	N4	182.3	179.7
C2	C3	C4	C5	0.4	359.4
H2	C2	C1	C6	180.1	180.0
C1	C2	H2	C3	180.0	179.7
H2	C2	C3	N3	356.2	359.7
H2	C2	C3	C4	179.8	180.3
N3	C3	C2	H2	356.2	359.7
C2	C3	N3	C4	183.6	180.6
N3	C3	C4	N4	6.0	0.3
N3	C3	C4	C5	184.0	180.0
C3'	N3	C3	HN3	169.5	180.0
C3	N3	C3'	O3	325.9	354.1
C3	N3	C3'	CM3	147.4	174.1
C4	C3	C2	H2	179.8	180.3
C2	C3	C4	N3	176.4	179.4
C4	C3	N3	C3'	115.9	154.8
C4	C3	N3	HN3	306.3	334.8
N4	C4	C3	C5	181.9	180.3
C3	C4	N4	C4'	59.3	214.4
C3	C4	N4	HN4	239.2	34.5
C3	C4	C5	C6	359.6	0.3
C3	C4	C5	H5	179.6	180.3
C3'	N3	C3	C4	115.9	154.8
C3	N3	C3'	HN3	190.5	180.0
O3	C3'	N3	CM3	178.5	180.0
N3	C3'	CM3	O3'	181.4	180.0
N3	C3'	CM3	HM31	301.5	300.0
N3	C3'	CM3	HM32	61.4	59.9
HN3	N3	C3	C4	306.3	334.8
C3	N3	HN3	C3'	169.5	180.0
HN3	N3	C3'	O3	135.4	174.1
HN3	N3	C3'	CM3	316.9	354.1
O3	C3'	N3	HN3	135.4	174.1
N3	C3'	O3	CM3	181.6	180.0
O3	C3'	CM3	O3'	2.9	0.1
O3	C3'	CM3	HM31	123.0	120.0
O3	C3'	CM3	HM32	242.9	240.0
CM3	C3'	N3	HN3	316.9	354.1
N3	C3'	CM3	O3	178.5	180.0
O3'	CM3	C3'	HM31	239.9	240.1
O3'	CM3	C3'	HM32	120.1	120.1
C3'	CM3	O3'	HO3	180.6	179.9
HM31	CM3	C3'	HM32	240.2	240.1
C3'	CM3	O3'	HM31	120.1	119.9
C3'	CM3	O3'	HM32	239.9	239.9
HM31	CM3	O3'	HM32	119.8	120.0
C3'	CM3	HM31	O3'	239.7	240.0
C3'	CM3	HM31	HM32	119.9	120.0
O3'	CM3	HM31	HM32	240.2	240.0
HM31	CM3	O3'	HO3	60.5	60.0
C3'	CM3	HM32	O3'	120.3	120.1
C3'	CM3	HM32	HM31	240.1	240.1
O3'	CM3	HM32	HM31	119.8	119.9
HM32	CM3	O3'	HO3	300.7	300.1
HO3	O3'	CM3	HM31	60.5	60.0
HO3	O3'	CM3	HM32	300.7	300.1
C3	C4	N4	C5	178.1	179.7
N4	C4	C5	C6	177.7	180.0
N4	C4	C5	H5	357.7	360.0
C4'	N4	C4	HN4	180.0	179.9
C4	N4	C4'	O4	2.3	355.5
C4	N4	C4'	CM4	180.0	175.4
C1	C6	C5	C4	0.2	360.0
C3	C4	C5	N4	181.9	180.3
C5	C4	N4	C4'	241.2	34.8
C5	C4	N4	HN4	61.2	214.9
C6	C5	C4	H5	180.0	180.0
C4	C5	C6	H6	180.2	180.0
C4'	N4	C4	C5	241.2	34.8
C4	N4	C4'	HN4	180.0	180.1
O4	C4'	N4	CM4	182.3	180.1
N4	C4'	CM4	HM41	180.0	180.0
N4	C4'	CM4	HM42	305.3	300.1
N4	C4'	CM4	HM43	54.7	60.1
HN4	N4	C4	C5	61.2	214.9
C4	N4	HN4	C4'	180.0	179.9
HN4	N4	C4'	O4	182.3	175.3
HN4	N4	C4'	CM4	360.0	355.3
O4	C4'	N4	HN4	182.3	175.3
N4	C4'	O4	CM4	177.7	179.9
O4	C4'	CM4	HM41	357.8	359.9
O4	C4'	CM4	HM42	123.0	120.0
O4	C4'	CM4	HM43	232.5	240.0
CM4	C4'	N4	HN4	360.0	355.3
N4	C4'	CM4	O4	182.2	180.1
HM41	CM4	C4'	HM42	234.8	240.0
HM41	CM4	C4'	HM43	125.3	119.9
HM42	CM4	C4'	HM43	250.6	240.0
C4'	CM4	HM41	HM42	125.3	120.1
C4'	CM4	HM41	HM43	234.7	240.0
HM42	CM4	HM41	HM43	109.4	120.0
C4'	CM4	HM42	HM41	228.6	240.0
C4'	CM4	HM42	HM43	114.3	120.0
HM41	CM4	HM42	HM43	245.7	240.1
C4'	CM4	HM43	HM41	131.4	120.0
C4'	CM4	HM43	HM42	245.7	239.9
HM41	CM4	HM43	HM42	114.3	120.0
C1	C6	C5	H6	180.0	180.0
C4	C5	C6	H5	180.0	180.0
C4	C5	H5	C6	180.0	180.0
H5	C5	C6	H6	0.2	360.0
C1	C6	H6	C5	180.0	180.0
H6	C6	C5	H5	0.2	360.0