PDB Chemical Component ST1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for ST1
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C' |
O1' |
1.260 |
1.235 |
| C' |
O2' |
1.250 |
1.361 |
| C' |
C1 |
1.404 |
1.455 |
| O2' |
HO2' |
0.951 |
0.981 |
| C1 |
C2 |
1.398 |
1.395 |
| C1 |
C6 |
1.393 |
1.394 |
| C2 |
C3 |
1.395 |
1.395 |
| C2 |
H2 |
1.104 |
1.088 |
| C3 |
O3 |
1.380 |
1.364 |
| C3 |
C4 |
1.401 |
1.395 |
| O3 |
HO3 |
0.957 |
0.969 |
| C4 |
N4 |
1.390 |
1.401 |
| C4 |
C5 |
1.381 |
1.395 |
| N4 |
C4' |
1.336 |
1.398 |
| N4 |
HN4 |
0.974 |
1.024 |
| C4' |
O4' |
1.233 |
1.227 |
| C4' |
CM4 |
1.519 |
1.508 |
| CM4 |
HM41 |
1.115 |
1.094 |
| CM4 |
HM42 |
1.115 |
1.093 |
| CM4 |
HM43 |
1.115 |
1.094 |
| C5 |
N5 |
1.356 |
1.424 |
| C5 |
C6 |
1.403 |
1.395 |
| N5 |
ON1 |
1.211 |
1.253 |
| N5 |
ON2 |
1.200 |
1.253 |
| C6 |
H6 |
1.102 |
1.089 |
Bond Angles for ST1
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1' |
C' |
O2' |
122.4 |
122.1 |
| O1' |
C' |
C1 |
119.2 |
125.4 |
| O2' |
C' |
C1 |
118.4 |
112.5 |
| C' |
O2' |
HO2' |
122.4 |
113.1 |
| C' |
C1 |
C2 |
121.0 |
119.9 |
| C' |
C1 |
C6 |
120.7 |
120.0 |
| C2 |
C1 |
C6 |
118.3 |
120.0 |
| C1 |
C2 |
C3 |
121.4 |
120.0 |
| C1 |
C2 |
H2 |
119.5 |
120.2 |
| C1 |
C6 |
C5 |
120.7 |
120.0 |
| C1 |
C6 |
H6 |
119.3 |
119.8 |
| C3 |
C2 |
H2 |
119.2 |
119.8 |
| C2 |
C3 |
O3 |
119.9 |
119.0 |
| C2 |
C3 |
C4 |
119.7 |
120.0 |
| O3 |
C3 |
C4 |
120.2 |
121.1 |
| C3 |
O3 |
HO3 |
110.2 |
110.2 |
| C3 |
C4 |
N4 |
121.5 |
119.4 |
| C3 |
C4 |
C5 |
119.4 |
120.0 |
| N4 |
C4 |
C5 |
119.1 |
120.5 |
| C4 |
N4 |
C4' |
110.5 |
127.9 |
| C4 |
N4 |
HN4 |
125.0 |
116.1 |
| C4 |
C5 |
N5 |
119.1 |
121.2 |
| C4 |
C5 |
C6 |
120.6 |
120.0 |
| C4' |
N4 |
HN4 |
124.3 |
116.0 |
| N4 |
C4' |
O4' |
121.5 |
127.6 |
| N4 |
C4' |
CM4 |
119.6 |
111.6 |
| O4' |
C4' |
CM4 |
118.9 |
120.8 |
| C4' |
CM4 |
HM41 |
119.6 |
109.7 |
| C4' |
CM4 |
HM42 |
108.6 |
109.8 |
| C4' |
CM4 |
HM43 |
108.6 |
109.9 |
| HM41 |
CM4 |
HM42 |
108.5 |
109.0 |
| HM41 |
CM4 |
HM43 |
108.6 |
109.6 |
| HM42 |
CM4 |
HM43 |
101.3 |
108.9 |
| N5 |
C5 |
C6 |
120.2 |
118.8 |
| C5 |
N5 |
ON1 |
111.3 |
118.8 |
| C5 |
N5 |
ON2 |
110.6 |
118.8 |
| C5 |
C6 |
H6 |
120.0 |
120.2 |
| ON1 |
N5 |
ON2 |
138.0 |
122.3 |
Torsion Angles for ST1
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2' |
C' |
O1' |
C1 |
181.3 |
180.0 |
| O1' |
C' |
O2' |
HO2' |
180.0 |
0.0 |
| O1' |
C' |
C1 |
C2 |
171.0 |
180.1 |
| O1' |
C' |
C1 |
C6 |
349.4 |
360.0 |
| O1' |
C' |
O2' |
C1 |
178.7 |
180.0 |
| O2' |
C' |
C1 |
C2 |
349.7 |
0.0 |
| O2' |
C' |
C1 |
C6 |
168.1 |
179.9 |
| O1' |
C' |
C1 |
O2' |
181.3 |
180.0 |
| C1 |
C' |
O2' |
HO2' |
1.3 |
180.1 |
| C2 |
C1 |
C' |
C6 |
181.6 |
180.1 |
| C' |
C1 |
C2 |
C3 |
177.8 |
179.9 |
| C' |
C1 |
C2 |
H2 |
357.8 |
359.9 |
| C' |
C1 |
C6 |
C5 |
181.7 |
180.1 |
| C' |
C1 |
C6 |
H6 |
1.7 |
0.1 |
| HO2' |
O2' |
C' |
C1 |
1.3 |
180.1 |
| C' |
C1 |
C2 |
C6 |
178.5 |
179.9 |
| C2 |
C1 |
C6 |
C5 |
0.2 |
0.0 |
| C2 |
C1 |
C6 |
H6 |
180.2 |
180.0 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
O3 |
185.3 |
180.0 |
| C1 |
C2 |
C3 |
C4 |
0.8 |
0.0 |
| C' |
C1 |
C6 |
C2 |
181.5 |
180.1 |
| C6 |
C1 |
C2 |
C3 |
359.3 |
360.0 |
| C6 |
C1 |
C2 |
H2 |
179.4 |
180.0 |
| C4 |
C5 |
C6 |
C1 |
0.1 |
360.0 |
| N5 |
C5 |
C6 |
C1 |
184.1 |
180.0 |
| C5 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
| C3 |
C2 |
C1 |
C6 |
359.3 |
360.0 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
| O3 |
C3 |
C2 |
C4 |
184.5 |
180.0 |
| C2 |
C3 |
O3 |
HO3 |
168.8 |
347.5 |
| C2 |
C3 |
C4 |
N4 |
180.1 |
180.0 |
| C2 |
C3 |
C4 |
C5 |
359.6 |
360.0 |
| H2 |
C2 |
C1 |
C6 |
179.4 |
180.0 |
| C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
| H2 |
C2 |
C3 |
O3 |
5.3 |
360.0 |
| H2 |
C2 |
C3 |
C4 |
180.8 |
180.0 |
| O3 |
C3 |
C2 |
H2 |
5.3 |
360.0 |
| C2 |
C3 |
O3 |
C4 |
175.5 |
180.0 |
| O3 |
C3 |
C4 |
N4 |
355.6 |
360.0 |
| O3 |
C3 |
C4 |
C5 |
175.0 |
180.0 |
| C4 |
C3 |
C2 |
H2 |
180.8 |
180.0 |
| C2 |
C3 |
C4 |
O3 |
184.5 |
180.0 |
| C4 |
C3 |
O3 |
HO3 |
353.3 |
167.5 |
| N4 |
C4 |
C3 |
C5 |
180.6 |
180.0 |
| C3 |
C4 |
N4 |
C4' |
282.3 |
90.0 |
| C3 |
C4 |
N4 |
HN4 |
106.3 |
269.9 |
| C3 |
C4 |
C5 |
N5 |
176.1 |
180.0 |
| C3 |
C4 |
C5 |
C6 |
360.0 |
0.0 |
| HO3 |
O3 |
C3 |
C4 |
353.3 |
167.5 |
| C3 |
C4 |
N4 |
C5 |
179.4 |
180.0 |
| N4 |
C4 |
C5 |
N5 |
355.6 |
360.0 |
| N4 |
C4 |
C5 |
C6 |
179.4 |
180.0 |
| C4' |
N4 |
C4 |
HN4 |
176.0 |
180.1 |
| C4 |
N4 |
C4' |
O4' |
273.4 |
0.2 |
| C4 |
N4 |
C4' |
CM4 |
94.7 |
180.0 |
| C1 |
C6 |
C5 |
C4 |
0.1 |
360.0 |
| C3 |
C4 |
C5 |
N4 |
180.5 |
180.0 |
| C5 |
C4 |
N4 |
C4' |
102.9 |
270.0 |
| C5 |
C4 |
N4 |
HN4 |
286.9 |
89.9 |
| N5 |
C5 |
C4 |
C6 |
176.1 |
180.0 |
| C4 |
C5 |
N5 |
ON1 |
77.3 |
360.0 |
| C4 |
C5 |
N5 |
ON2 |
257.8 |
180.0 |
| C4 |
C5 |
C6 |
H6 |
180.2 |
180.0 |
| C4' |
N4 |
C4 |
C5 |
102.9 |
270.0 |
| C4 |
N4 |
C4' |
HN4 |
184.0 |
179.9 |
| O4' |
C4' |
N4 |
CM4 |
178.7 |
180.2 |
| N4 |
C4' |
CM4 |
HM41 |
180.0 |
297.8 |
| N4 |
C4' |
CM4 |
HM42 |
305.3 |
178.1 |
| N4 |
C4' |
CM4 |
HM43 |
54.7 |
58.4 |
| HN4 |
N4 |
C4 |
C5 |
286.9 |
89.9 |
| C4 |
N4 |
HN4 |
C4' |
175.5 |
180.1 |
| HN4 |
N4 |
C4' |
O4' |
89.4 |
180.3 |
| HN4 |
N4 |
C4' |
CM4 |
270.8 |
0.1 |
| O4' |
C4' |
N4 |
HN4 |
89.4 |
180.3 |
| N4 |
C4' |
O4' |
CM4 |
181.3 |
179.8 |
| O4' |
C4' |
CM4 |
HM41 |
1.3 |
117.7 |
| O4' |
C4' |
CM4 |
HM42 |
126.6 |
357.9 |
| O4' |
C4' |
CM4 |
HM43 |
236.0 |
238.2 |
| CM4 |
C4' |
N4 |
HN4 |
270.8 |
0.1 |
| N4 |
C4' |
CM4 |
O4' |
178.7 |
180.2 |
| HM41 |
CM4 |
C4' |
HM42 |
234.7 |
119.7 |
| HM41 |
CM4 |
C4' |
HM43 |
125.3 |
239.5 |
| HM42 |
CM4 |
C4' |
HM43 |
250.6 |
119.7 |
| C4' |
CM4 |
HM41 |
HM42 |
125.3 |
239.8 |
| C4' |
CM4 |
HM41 |
HM43 |
234.7 |
120.8 |
| HM42 |
CM4 |
HM41 |
HM43 |
109.4 |
241.0 |
| C4' |
CM4 |
HM42 |
HM41 |
228.5 |
120.2 |
| C4' |
CM4 |
HM42 |
HM43 |
114.3 |
239.6 |
| HM41 |
CM4 |
HM42 |
HM43 |
245.8 |
119.4 |
| C4' |
CM4 |
HM43 |
HM41 |
131.5 |
239.4 |
| C4' |
CM4 |
HM43 |
HM42 |
245.7 |
120.3 |
| HM41 |
CM4 |
HM43 |
HM42 |
114.2 |
240.9 |
| C1 |
C6 |
C5 |
N5 |
184.1 |
180.0 |
| C4 |
C5 |
N5 |
C6 |
183.9 |
180.0 |
| N5 |
C5 |
C6 |
H6 |
4.1 |
0.0 |
| ON1 |
N5 |
C5 |
ON2 |
179.5 |
180.0 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
N5 |
176.1 |
180.0 |
| C6 |
C5 |
N5 |
ON1 |
253.5 |
180.0 |
| C6 |
C5 |
N5 |
ON2 |
73.9 |
359.9 |
| ON1 |
N5 |
C5 |
C6 |
253.5 |
180.0 |
| C5 |
N5 |
ON1 |
ON2 |
180.6 |
180.0 |
| ON2 |
N5 |
C5 |
C6 |
73.9 |
359.9 |
| C5 |
N5 |
ON2 |
ON1 |
179.4 |
180.0 |
| C1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |