PDB Chemical Component SSH
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SSH
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O2 |
C1 |
1.281 |
1.343 |
| O2 |
H2 |
0.950 |
0.967 |
| C1 |
O1 |
1.266 |
1.208 |
| C1 |
C2 |
1.490 |
1.507 |
| C2 |
C3 |
1.531 |
1.530 |
| C2 |
OT |
1.115 |
1.430 |
| C2 |
H2C1 |
1.100 |
1.090 |
| C3 |
C4 |
1.585 |
1.530 |
| C3 |
H3C1 |
1.100 |
1.090 |
| C3 |
H3C2 |
1.100 |
1.090 |
| C4 |
O4 |
1.440 |
1.429 |
| C4 |
C5 |
1.542 |
1.530 |
| C4 |
H4 |
1.100 |
1.090 |
| O4 |
HA |
0.950 |
0.967 |
| C5 |
O5 |
1.438 |
1.429 |
| C5 |
C6 |
1.544 |
1.530 |
| C5 |
H5 |
1.100 |
1.090 |
| O5 |
HB |
0.950 |
0.967 |
| C6 |
O6 |
1.438 |
1.429 |
| C6 |
H6C1 |
1.100 |
1.090 |
| C6 |
H6C2 |
1.100 |
1.090 |
| O6 |
H6 |
0.950 |
0.967 |
| OT |
HT |
0.950 |
0.967 |
Bond Angles for SSH
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
O2 |
H2 |
109.5 |
120.0 |
| O2 |
C1 |
O1 |
124.3 |
120.0 |
| O2 |
C1 |
C2 |
122.2 |
120.0 |
| O1 |
C1 |
C2 |
113.5 |
120.0 |
| C1 |
C2 |
C3 |
117.3 |
109.5 |
| C1 |
C2 |
OT |
109.4 |
109.5 |
| C1 |
C2 |
H2C1 |
103.9 |
109.5 |
| C3 |
C2 |
OT |
109.4 |
109.5 |
| C3 |
C2 |
H2C1 |
104.0 |
109.5 |
| C2 |
C3 |
C4 |
106.4 |
109.5 |
| C2 |
C3 |
H3C1 |
111.2 |
109.5 |
| C2 |
C3 |
H3C2 |
110.5 |
109.4 |
| OT |
C2 |
H2C1 |
112.8 |
109.5 |
| C2 |
OT |
HT |
109.5 |
106.8 |
| C4 |
C3 |
H3C1 |
111.2 |
109.5 |
| C4 |
C3 |
H3C2 |
110.5 |
109.5 |
| C3 |
C4 |
O4 |
107.3 |
109.5 |
| C3 |
C4 |
C5 |
111.1 |
109.5 |
| C3 |
C4 |
H4 |
109.6 |
109.5 |
| H3C1 |
C3 |
H3C2 |
107.1 |
109.5 |
| O4 |
C4 |
C5 |
108.6 |
109.5 |
| O4 |
C4 |
H4 |
112.0 |
109.5 |
| C4 |
O4 |
HA |
109.5 |
106.8 |
| C5 |
C4 |
H4 |
108.3 |
109.5 |
| C4 |
C5 |
O5 |
105.8 |
109.5 |
| C4 |
C5 |
C6 |
115.1 |
109.5 |
| C4 |
C5 |
H5 |
106.7 |
109.5 |
| O5 |
C5 |
C6 |
104.3 |
109.5 |
| O5 |
C5 |
H5 |
117.1 |
109.5 |
| C5 |
O5 |
HB |
109.5 |
106.8 |
| C6 |
C5 |
H5 |
108.1 |
109.5 |
| C5 |
C6 |
O6 |
105.0 |
109.5 |
| C5 |
C6 |
H6C1 |
112.0 |
109.5 |
| C5 |
C6 |
H6C2 |
111.0 |
109.5 |
| O6 |
C6 |
H6C1 |
112.0 |
109.5 |
| O6 |
C6 |
H6C2 |
111.0 |
109.4 |
| C6 |
O6 |
H6 |
109.5 |
106.8 |
| H6C1 |
C6 |
H6C2 |
106.0 |
109.5 |
Torsion Angles for SSH
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1 |
C1 |
O2 |
C2 |
178.2 |
180.1 |
| O2 |
C1 |
C2 |
C3 |
9.3 |
295.0 |
| O2 |
C1 |
C2 |
OT |
244.0 |
175.0 |
| O2 |
C1 |
C2 |
H2C1 |
123.3 |
55.0 |
| H2 |
O2 |
C1 |
O1 |
0.0 |
0.0 |
| H2 |
O2 |
C1 |
C2 |
181.8 |
180.0 |
| O1 |
C1 |
O2 |
H2 |
0.0 |
0.0 |
| O2 |
C1 |
O1 |
C2 |
181.6 |
179.9 |
| O1 |
C1 |
C2 |
C3 |
190.9 |
115.0 |
| O1 |
C1 |
C2 |
OT |
65.6 |
355.0 |
| O1 |
C1 |
C2 |
H2C1 |
304.9 |
235.0 |
| C2 |
C1 |
O2 |
H2 |
181.8 |
180.0 |
| O2 |
C1 |
C2 |
O1 |
178.4 |
180.1 |
| C3 |
C2 |
C1 |
OT |
125.3 |
120.0 |
| C3 |
C2 |
C1 |
H2C1 |
245.9 |
240.0 |
| C1 |
C2 |
C3 |
C4 |
87.0 |
175.0 |
| C1 |
C2 |
C3 |
H3C1 |
325.8 |
55.0 |
| C1 |
C2 |
C3 |
H3C2 |
207.0 |
295.0 |
| OT |
C2 |
C1 |
H2C1 |
120.7 |
120.0 |
| C1 |
C2 |
OT |
HT |
206.4 |
60.0 |
| C1 |
C2 |
C3 |
OT |
234.7 |
240.0 |
| C1 |
C2 |
C3 |
H2C1 |
114.0 |
120.0 |
| OT |
C2 |
C3 |
H2C1 |
239.3 |
240.0 |
| C3 |
C2 |
OT |
HT |
76.7 |
300.0 |
| C4 |
C3 |
C2 |
H3C1 |
121.2 |
120.0 |
| C4 |
C3 |
C2 |
H3C2 |
240.0 |
240.0 |
| C2 |
C3 |
C4 |
O4 |
1.4 |
295.0 |
| C2 |
C3 |
C4 |
C5 |
242.8 |
175.0 |
| C2 |
C3 |
C4 |
H4 |
123.2 |
55.0 |
| H3C1 |
C3 |
C2 |
H3C2 |
118.8 |
120.0 |
| C1 |
C2 |
OT |
C3 |
129.7 |
120.0 |
| C1 |
C2 |
OT |
H2C1 |
244.9 |
240.0 |
| C3 |
C2 |
OT |
H2C1 |
115.2 |
120.0 |
| OT |
C2 |
C3 |
C4 |
212.2 |
295.0 |
| OT |
C2 |
C3 |
H3C1 |
91.0 |
175.0 |
| OT |
C2 |
C3 |
H3C2 |
332.2 |
55.0 |
| C1 |
C2 |
H2C1 |
C3 |
236.7 |
240.0 |
| C1 |
C2 |
H2C1 |
OT |
118.4 |
120.0 |
| C3 |
C2 |
H2C1 |
OT |
241.6 |
240.0 |
| H2C1 |
C2 |
C3 |
C4 |
332.9 |
55.0 |
| H2C1 |
C2 |
C3 |
H3C1 |
211.7 |
295.0 |
| H2C1 |
C2 |
C3 |
H3C2 |
92.9 |
175.0 |
| H2C1 |
C2 |
OT |
HT |
321.5 |
180.0 |
| C4 |
C3 |
C2 |
OT |
212.2 |
295.0 |
| C4 |
C3 |
C2 |
H2C1 |
332.9 |
55.0 |
| C2 |
C3 |
C4 |
H3C1 |
238.8 |
240.0 |
| C2 |
C3 |
C4 |
H3C2 |
120.0 |
120.0 |
| H3C1 |
C3 |
C4 |
H3C2 |
241.2 |
240.0 |
| O4 |
C4 |
C3 |
C5 |
118.6 |
120.0 |
| O4 |
C4 |
C3 |
H4 |
238.2 |
240.0 |
| C3 |
C4 |
O4 |
HA |
94.4 |
300.0 |
| C5 |
C4 |
C3 |
H4 |
119.6 |
120.0 |
| C3 |
C4 |
C5 |
O5 |
310.0 |
300.0 |
| C3 |
C4 |
C5 |
C6 |
195.3 |
180.0 |
| C3 |
C4 |
C5 |
H5 |
75.4 |
60.0 |
| H3C1 |
C3 |
C2 |
OT |
91.0 |
175.0 |
| H3C1 |
C3 |
C2 |
H2C1 |
211.7 |
295.0 |
| C2 |
C3 |
H3C1 |
C4 |
118.3 |
120.0 |
| C2 |
C3 |
H3C1 |
H3C2 |
239.2 |
240.0 |
| C4 |
C3 |
H3C1 |
H3C2 |
120.9 |
120.0 |
| H3C1 |
C3 |
C4 |
O4 |
122.6 |
55.0 |
| H3C1 |
C3 |
C4 |
C5 |
4.0 |
295.0 |
| H3C1 |
C3 |
C4 |
H4 |
244.4 |
175.0 |
| H3C2 |
C3 |
C2 |
OT |
332.2 |
55.0 |
| H3C2 |
C3 |
C2 |
H2C1 |
92.9 |
175.0 |
| C2 |
C3 |
H3C2 |
C4 |
242.5 |
240.0 |
| C2 |
C3 |
H3C2 |
H3C1 |
121.3 |
120.0 |
| C4 |
C3 |
H3C2 |
H3C1 |
238.7 |
240.0 |
| H3C2 |
C3 |
C4 |
O4 |
241.4 |
175.0 |
| H3C2 |
C3 |
C4 |
C5 |
122.8 |
55.0 |
| H3C2 |
C3 |
C4 |
H4 |
3.2 |
295.0 |
| O4 |
C4 |
C3 |
H3C1 |
122.6 |
55.0 |
| O4 |
C4 |
C3 |
H3C2 |
241.4 |
175.0 |
| C3 |
C4 |
O4 |
C5 |
239.8 |
240.0 |
| C3 |
C4 |
O4 |
H4 |
120.3 |
120.0 |
| C5 |
C4 |
O4 |
H4 |
240.5 |
240.0 |
| O4 |
C4 |
C5 |
O5 |
192.2 |
180.0 |
| O4 |
C4 |
C5 |
C6 |
77.5 |
60.0 |
| O4 |
C4 |
C5 |
H5 |
317.6 |
300.0 |
| C5 |
C4 |
C3 |
H3C1 |
4.0 |
295.0 |
| C5 |
C4 |
C3 |
H3C2 |
122.8 |
55.0 |
| C3 |
C4 |
C5 |
O4 |
117.8 |
120.0 |
| C3 |
C4 |
C5 |
H4 |
239.6 |
240.0 |
| O4 |
C4 |
C5 |
H4 |
121.8 |
120.0 |
| C5 |
C4 |
O4 |
HA |
214.6 |
60.0 |
| O5 |
C5 |
C4 |
C6 |
114.7 |
120.0 |
| O5 |
C5 |
C4 |
H5 |
234.6 |
240.0 |
| C4 |
C5 |
O5 |
HB |
140.5 |
300.0 |
| C6 |
C5 |
C4 |
H5 |
120.0 |
120.1 |
| C4 |
C5 |
C6 |
O6 |
191.4 |
185.0 |
| C4 |
C5 |
C6 |
H6C1 |
69.7 |
65.0 |
| C4 |
C5 |
C6 |
H6C2 |
311.5 |
305.0 |
| H4 |
C4 |
C3 |
H3C1 |
244.4 |
175.0 |
| H4 |
C4 |
C3 |
H3C2 |
3.2 |
295.0 |
| C3 |
C4 |
H4 |
O4 |
241.0 |
240.0 |
| C3 |
C4 |
H4 |
C5 |
121.3 |
120.0 |
| O4 |
C4 |
H4 |
C5 |
240.3 |
240.0 |
| H4 |
C4 |
O4 |
HA |
334.1 |
180.0 |
| H4 |
C4 |
C5 |
O5 |
70.4 |
60.0 |
| H4 |
C4 |
C5 |
C6 |
315.7 |
300.1 |
| H4 |
C4 |
C5 |
H5 |
195.7 |
180.0 |
| HA |
O4 |
C4 |
C5 |
214.6 |
60.0 |
| HA |
O4 |
C4 |
H4 |
334.1 |
180.0 |
| O5 |
C5 |
C4 |
H4 |
70.4 |
60.0 |
| C4 |
C5 |
O5 |
C6 |
238.1 |
240.0 |
| C4 |
C5 |
O5 |
H5 |
118.7 |
120.0 |
| C6 |
C5 |
O5 |
H5 |
240.6 |
240.0 |
| O5 |
C5 |
C6 |
O6 |
75.9 |
65.0 |
| O5 |
C5 |
C6 |
H6C1 |
314.2 |
305.0 |
| O5 |
C5 |
C6 |
H6C2 |
195.9 |
185.0 |
| C6 |
C5 |
C4 |
H4 |
315.7 |
300.1 |
| C4 |
C5 |
C6 |
O5 |
115.5 |
120.0 |
| C4 |
C5 |
C6 |
H5 |
240.8 |
240.0 |
| O5 |
C5 |
C6 |
H5 |
125.3 |
120.0 |
| C6 |
C5 |
O5 |
HB |
262.4 |
60.0 |
| O6 |
C6 |
C5 |
H6C1 |
121.7 |
120.1 |
| O6 |
C6 |
C5 |
H6C2 |
240.0 |
240.1 |
| C5 |
C6 |
O6 |
H6 |
356.1 |
180.0 |
| H6C1 |
C6 |
C5 |
H6C2 |
118.3 |
120.0 |
| H5 |
C5 |
C4 |
H4 |
195.7 |
180.0 |
| C4 |
C5 |
H5 |
O5 |
241.7 |
240.0 |
| C4 |
C5 |
H5 |
C6 |
124.4 |
120.0 |
| O5 |
C5 |
H5 |
C6 |
242.6 |
240.0 |
| H5 |
C5 |
O5 |
HB |
21.8 |
180.0 |
| H5 |
C5 |
C6 |
O6 |
310.6 |
305.1 |
| H5 |
C5 |
C6 |
H6C1 |
188.9 |
185.0 |
| H5 |
C5 |
C6 |
H6C2 |
70.6 |
65.0 |
| HB |
O5 |
C5 |
C6 |
262.4 |
60.0 |
| HB |
O5 |
C5 |
H5 |
21.8 |
180.0 |
| O6 |
C6 |
C5 |
H5 |
310.6 |
305.1 |
| C5 |
C6 |
O6 |
H6C1 |
238.3 |
239.9 |
| C5 |
C6 |
O6 |
H6C2 |
120.0 |
120.0 |
| H6C1 |
C6 |
O6 |
H6C2 |
241.7 |
240.0 |
| H6C1 |
C6 |
C5 |
H5 |
188.9 |
185.0 |
| C5 |
C6 |
H6C1 |
O6 |
117.6 |
120.1 |
| C5 |
C6 |
H6C1 |
H6C2 |
238.8 |
240.0 |
| O6 |
C6 |
H6C1 |
H6C2 |
121.2 |
120.0 |
| H6C1 |
C6 |
O6 |
H6 |
117.8 |
300.1 |
| H6C2 |
C6 |
C5 |
H5 |
70.6 |
65.0 |
| C5 |
C6 |
H6C2 |
O6 |
243.7 |
240.0 |
| C5 |
C6 |
H6C2 |
H6C1 |
121.8 |
120.0 |
| O6 |
C6 |
H6C2 |
H6C1 |
238.1 |
240.0 |
| H6C2 |
C6 |
O6 |
H6 |
236.1 |
60.0 |
| H6 |
O6 |
C6 |
H6C1 |
117.8 |
300.1 |
| H6 |
O6 |
C6 |
H6C2 |
236.1 |
60.0 |
| HT |
OT |
C2 |
H2C1 |
321.5 |
180.0 |