PDB Chemical Component SSA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SSA

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N10 CA 1.439 1.468
N10 HN11 1.021 1.009
N10 HN12 1.020 1.009
CA CB 1.524 1.530
CA C9 1.503 1.507
CA HA 1.115 1.089
CB OG 1.441 1.429
CB HB1 1.114 1.090
CB HB2 1.115 1.091
OG HOG 0.950 0.967
C9 O9 1.232 1.213
C9 N8 1.301 1.347
N8 S1 1.607 1.655
N8 HN8 1.020 0.970
S1 O1S 1.435 1.420
S1 O2S 1.428 1.420
S1 O5' 1.553 1.522
O5' C5' 1.446 1.428
C5' C4' 1.538 1.530
C5' H5'1 1.115 1.091
C5' H5'2 1.115 1.090
C4' O4' 1.447 1.437
C4' C3' 1.521 1.540
C4' H4' 1.114 1.089
O4' C1' 1.450 1.444
C3' O3' 1.422 1.429
C3' C2' 1.510 1.552
C3' H3' 1.115 1.090
O3' HO3' 0.950 0.967
C2' O2' 1.431 1.429
C2' C1' 1.537 1.550
C2' H2' 1.115 1.090
O2' HO2' 0.950 0.966
C1' N9 1.493 1.464
C1' H1' 1.116 1.089
N9 C8 1.378 1.363
N9 C4 1.384 1.372
C8 N7 1.302 1.302
C8 H8 1.102 1.080
N7 C5 1.392 1.355
C5 C6 1.401 1.406
C5 C4 1.370 1.404
C6 N6 1.310 1.383
C6 N1 1.336 1.328
N6 HN61 1.021 0.970
N6 HN62 1.020 0.970
N1 C2 1.331 1.321
C2 N3 1.325 1.316
C2 H2 1.103 1.079
N3 C4 1.370 1.329

Bond Angles for SSA

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N10 HN11 111.8 106.7
CA N10 HN12 111.4 106.7
N10 CA CB 111.8 109.5
N10 CA C9 102.2 109.5
N10 CA HA 112.7 109.5
HN11 N10 HN12 111.4 106.7
CB CA C9 109.6 109.5
CB CA HA 105.8 109.5
CA CB OG 113.3 109.5
CA CB HB1 110.8 109.5
CA CB HB2 110.8 109.5
C9 CA HA 114.8 109.4
CA C9 O9 122.4 119.9
CA C9 N8 111.4 120.1
OG CB HB1 110.8 109.5
OG CB HB2 110.8 109.5
CB OG HOG 113.3 106.8
HB1 CB HB2 99.6 109.4
O9 C9 N8 126.1 120.0
C9 N8 S1 124.4 120.0
C9 N8 HN8 106.5 120.0
S1 N8 HN8 129.1 120.0
N8 S1 O1S 108.6 105.8
N8 S1 O2S 105.3 105.8
N8 S1 O5' 111.1 107.4
O1S S1 O2S 111.6 125.4
O1S S1 O5' 114.2 105.8
O2S S1 O5' 105.5 105.7
S1 O5' C5' 118.4 106.8
O5' C5' C4' 109.6 109.5
O5' C5' H5'1 112.2 109.5
O5' C5' H5'2 112.1 109.5
C4' C5' H5'1 112.2 109.5
C4' C5' H5'2 112.2 109.5
C5' C4' O4' 118.1 109.8
C5' C4' C3' 108.0 109.9
C5' C4' H4' 102.9 109.8
H5'1 C5' H5'2 98.3 109.4
O4' C4' C3' 103.4 107.5
O4' C4' H4' 107.4 109.9
C4' O4' C1' 108.2 106.9
C3' C4' H4' 117.7 109.9
C4' C3' O3' 105.6 110.8
C4' C3' C2' 102.7 104.0
C4' C3' H3' 117.0 110.5
O4' C1' C2' 107.5 103.5
O4' C1' N9 113.8 110.6
O4' C1' H1' 108.8 110.6
O3' C3' C2' 112.3 110.5
O3' C3' H3' 108.2 110.4
C3' O3' HO3' 105.6 106.8
C2' C3' H3' 110.8 110.5
C3' C2' O2' 108.7 110.9
C3' C2' C1' 99.1 102.1
C3' C2' H2' 116.1 110.9
O2' C2' C1' 108.5 110.9
O2' C2' H2' 107.8 110.8
C2' O2' HO2' 108.7 106.8
C1' C2' H2' 116.1 110.9
C2' C1' N9 112.0 110.8
C2' C1' H1' 110.7 110.6
N9 C1' H1' 103.9 110.6
C1' N9 C8 130.4 126.3
C1' N9 C4 124.5 126.3
C8 N9 C4 104.5 107.4
N9 C8 N7 114.5 110.0
N9 C8 H8 125.3 125.1
N9 C4 C5 106.5 106.0
N9 C4 N3 126.3 134.9
N7 C8 H8 120.2 124.9
C8 N7 C5 103.6 109.4
N7 C5 C6 132.8 134.6
N7 C5 C4 110.6 107.2
C6 C5 C4 116.6 118.2
C5 C6 N6 123.3 120.8
C5 C6 N1 117.8 118.4
C5 C4 N3 127.1 119.0
N6 C6 N1 118.9 120.8
C6 N6 HN61 123.3 120.0
C6 N6 HN62 107.4 120.1
C6 N1 C2 119.5 121.2
HN61 N6 HN62 107.2 119.9
N1 C2 N3 129.1 122.4
N1 C2 H2 115.7 118.7
N3 C2 H2 115.2 118.9
C2 N3 C4 109.5 120.8

Torsion Angles for SSA

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
HN11 N10 CA HN12 125.3 113.8
CB CA N10 C9 242.9 240.0
CB CA N10 HA 119.1 120.0
N10 CA CB OG 59.4 300.0
N10 CA CB HB1 184.6 60.0
N10 CA CB HB2 294.2 180.0
C9 CA N10 HA 236.2 240.1
N10 CA C9 O9 348.4 329.9
N10 CA C9 N8 171.0 150.0
CA N10 HN11 HN12 234.6 246.2
HN11 N10 CA CB 180.1 53.8
HN11 N10 CA C9 297.2 173.8
HN11 N10 CA HA 61.0 293.7
CA N10 HN12 HN11 125.6 113.8
HN12 N10 CA CB 54.7 300.0
HN12 N10 CA C9 171.8 60.0
HN12 N10 CA HA 295.6 180.0
CB CA N10 HN11 180.1 53.8
CB CA N10 HN12 54.7 300.0
N10 CA CB C9 112.6 120.0
N10 CA CB HA 236.9 240.0
C9 CA CB HA 124.3 119.9
CB CA C9 O9 107.1 90.0
CB CA C9 N8 289.7 270.0
OG CB CA HB1 234.8 240.0
OG CB CA HB2 125.2 120.0
CA CB OG HOG 180.0 180.0
HB1 CB CA HB2 250.5 240.0
C9 CA N10 HN11 297.2 173.8
C9 CA N10 HN12 171.8 60.0
N10 CA C9 CB 241.3 240.0
N10 CA C9 HA 122.4 120.0
CB CA C9 HA 241.1 240.0
C9 CA CB OG 306.8 180.0
C9 CA CB HB1 72.0 300.0
C9 CA CB HB2 181.6 60.0
O9 C9 CA N8 177.4 179.9
CA C9 N8 S1 165.9 180.0
CA C9 N8 HN8 345.9 0.0
HA CA N10 HN11 61.0 293.7
HA CA N10 HN12 295.6 180.0
N10 CA HA CB 122.5 120.0
N10 CA HA C9 243.5 240.0
CB CA HA C9 121.0 120.0
HA CA CB OG 182.5 60.0
HA CA CB HB1 307.7 180.1
HA CA CB HB2 57.2 300.0
HA CA C9 O9 226.0 209.9
HA CA C9 N8 48.6 30.0
OG CB CA C9 306.8 180.0
OG CB CA HA 182.5 60.0
CA CB OG HB1 125.2 120.1
CA CB OG HB2 234.8 240.0
HB1 CB OG HB2 109.5 119.9
HB1 CB CA C9 72.0 300.0
HB1 CB CA HA 307.7 180.1
CA CB HB1 OG 233.4 240.0
CA CB HB1 HB2 116.7 120.0
OG CB HB1 HB2 243.3 240.0
HB1 CB OG HOG 54.8 59.9
HB2 CB CA C9 181.6 60.0
HB2 CB CA HA 57.2 300.0
CA CB HB2 OG 126.6 120.0
CA CB HB2 HB1 243.3 240.0
OG CB HB2 HB1 116.7 120.0
HB2 CB OG HOG 305.2 300.0
HOG OG CB HB1 54.8 59.9
HOG OG CB HB2 305.2 300.0
O9 C9 CA HA 226.0 209.9
CA C9 O9 N8 183.0 180.1
O9 C9 N8 S1 348.6 0.0
O9 C9 N8 HN8 168.6 180.1
N8 C9 CA HA 48.6 30.0
CA C9 N8 O9 177.3 179.9
S1 N8 C9 HN8 180.0 180.0
C9 N8 S1 O1S 70.2 172.6
C9 N8 S1 O2S 189.9 307.4
C9 N8 S1 O5' 303.7 60.0
C9 N8 S1 HN8 180.0 180.0
O1S S1 N8 O2S 240.3 225.2
O1S S1 N8 O5' 126.5 112.6
O2S S1 N8 O5' 246.2 247.4
N8 S1 O5' C5' 310.1 90.0
C9 N8 HN8 S1 180.0 180.0
HN8 N8 S1 O1S 250.2 352.6
HN8 N8 S1 O2S 9.9 127.4
HN8 N8 S1 O5' 123.7 240.0
O1S S1 N8 HN8 250.2 352.6
N8 S1 O1S O2S 115.7 123.2
N8 S1 O1S O5' 235.3 246.3
O2S S1 O1S O5' 119.6 123.1
O1S S1 O5' C5' 186.8 337.4
O2S S1 N8 HN8 9.9 127.4
N8 S1 O2S O1S 242.3 236.8
N8 S1 O2S O5' 117.6 113.7
O1S S1 O2S O5' 235.3 236.9
O2S S1 O5' C5' 63.8 202.6
O5' S1 N8 HN8 123.7 240.0
N8 S1 O5' O1S 123.3 112.6
N8 S1 O5' O2S 246.3 247.4
O1S S1 O5' O2S 123.0 134.8
S1 O5' C5' C4' 207.6 180.0
S1 O5' C5' H5'1 332.8 300.1
S1 O5' C5' H5'2 82.3 60.0
C4' C5' O5' H5'1 234.7 240.0
C4' C5' O5' H5'2 125.3 120.0
O5' C5' C4' O4' 312.0 61.7
O5' C5' C4' C3' 68.8 179.7
O5' C5' C4' H4' 193.9 300.7
H5'1 C5' O5' H5'2 250.5 240.1
O5' C5' C4' H5'1 125.3 120.0
O5' C5' C4' H5'2 234.8 240.0
H5'1 C5' C4' H5'2 109.5 119.9
O4' C4' C5' C3' 243.3 242.0
O4' C4' C5' H4' 118.1 121.0
C5' C4' O4' C1' 141.1 146.0
C3' C4' C5' H4' 234.8 239.0
C5' C4' C3' O3' 75.4 119.8
C5' C4' C3' C2' 193.3 238.6
C5' C4' C3' H3' 314.9 357.1
O5' C5' H5'1 C4' 236.2 239.9
O5' C5' H5'1 H5'2 118.0 120.0
C4' C5' H5'1 H5'2 241.9 240.1
H5'1 C5' C4' O4' 186.8 301.7
H5'1 C5' C4' C3' 303.5 59.7
H5'1 C5' C4' H4' 68.7 180.7
O5' C5' H5'2 C4' 123.8 120.1
O5' C5' H5'2 H5'1 241.9 240.0
C4' C5' H5'2 H5'1 118.1 120.0
H5'2 C5' C4' O4' 77.3 181.7
H5'2 C5' C4' C3' 194.0 299.8
H5'2 C5' C4' H4' 319.2 60.7
O4' C4' C5' H5'1 186.8 301.7
O4' C4' C5' H5'2 77.3 181.7
C5' C4' O4' C3' 119.1 119.5
C5' C4' O4' H4' 244.3 239.1
C3' C4' O4' H4' 125.2 119.5
O4' C4' C3' O3' 201.3 239.3
O4' C4' C3' C2' 319.2 358.0
O4' C4' C3' H3' 80.8 116.6
C4' O4' C1' C2' 4.7 319.9
C4' O4' C1' N9 240.1 201.3
C4' O4' C1' H1' 124.7 78.4
C3' C4' C5' H5'1 303.5 59.7
C3' C4' C5' H5'2 194.0 299.8
C5' C4' C3' O4' 234.1 240.5
C5' C4' C3' H4' 115.8 121.0
O4' C4' C3' H4' 241.8 240.4
C3' C4' O4' C1' 22.0 26.5
O3' C3' C4' C2' 242.1 241.3
O3' C3' C4' H3' 120.5 122.7
C4' C3' O3' HO3' 180.0 176.2
C2' C3' C4' H3' 238.4 241.4
C4' C3' C2' O2' 288.5 220.8
C4' C3' C2' C1' 41.7 339.0
C4' C3' C2' H2' 166.9 97.2
H4' C4' C5' H5'1 68.7 180.7
H4' C4' C5' H5'2 319.2 60.7
C5' C4' H4' O4' 125.4 120.9
C5' C4' H4' C3' 241.4 239.0
O4' C4' H4' C3' 116.1 118.1
H4' C4' O4' C1' 256.8 266.9
H4' C4' C3' O3' 319.6 358.9
H4' C4' C3' C2' 77.5 117.6
H4' C4' C3' H3' 199.1 236.2
C1' O4' C4' C3' 22.0 26.5
C1' O4' C4' H4' 256.8 266.9
C3' C2' C1' O4' 330.7 37.1
O2' C2' C1' O4' 84.1 155.3
O4' C1' C2' H2' 205.6 278.9
C2' C1' O4' N9 124.7 118.7
C2' C1' O4' H1' 240.0 241.6
N9 C1' O4' H1' 115.4 122.9
O4' C1' N9 C8 32.7 28.5
O4' C1' N9 C4 223.3 208.2
O3' C3' C4' H4' 319.6 358.9
C4' C3' O3' C2' 111.2 114.7
C4' C3' O3' H3' 233.9 237.3
C2' C3' O3' H3' 122.7 122.5
O3' C3' C2' O2' 41.5 339.8
O3' C3' C2' C1' 154.8 98.0
O3' C3' C2' H2' 279.9 216.1
C2' C3' C4' H4' 77.5 117.6
C4' C3' C2' O3' 247.0 241.1
C4' C3' C2' H3' 125.8 118.6
O4' C1' C2' C3' 330.7 37.1
O3' C3' C2' H3' 238.8 237.5
C2' C3' O3' HO3' 68.8 61.4
O2' C2' C3' C1' 246.8 241.8
O2' C2' C3' H2' 121.6 123.6
C3' C2' O2' HO2' 180.0 292.7
C1' C2' C3' H2' 234.9 241.8
C3' C2' C1' N9 96.5 155.7
C3' C2' C1' H1' 212.0 278.6
H3' C3' C4' H4' 199.1 236.2
C4' C3' H3' O3' 119.1 122.9
C4' C3' H3' C2' 242.7 245.4
O3' C3' H3' C2' 123.6 122.5
H3' C3' O3' HO3' 306.1 298.9
H3' C3' C2' O2' 162.7 102.3
H3' C3' C2' C1' 276.0 220.5
H3' C3' C2' H2' 41.1 338.6
HO3' O3' C3' C2' 68.8 61.4
HO3' O3' C3' H3' 306.1 298.9
O4' C1' C2' O2' 84.1 155.3
O2' C2' C3' H3' 162.7 102.3
C3' C2' O2' C1' 106.9 112.7
C3' C2' O2' H2' 233.4 236.3
C1' C2' O2' H2' 126.5 123.6
O2' C2' C1' N9 209.8 273.8
O2' C2' C1' H1' 325.3 36.8
O4' C1' C2' N9 234.3 241.4
O4' C1' C2' H1' 118.8 118.5
C1' C2' C3' H3' 276.0 220.5
C3' C2' C1' O2' 246.7 241.8
C3' C2' C1' H2' 125.1 118.2
O2' C2' C1' H2' 238.4 236.4
C1' C2' O2' HO2' 73.1 180.0
N9 C1' C2' H1' 244.5 237.1
C2' C1' N9 C8 270.5 274.4
C2' C1' N9 C4 101.1 94.1
H2' C2' C3' H3' 41.1 338.6
C3' C2' H2' O2' 122.1 123.6
C3' C2' H2' C1' 244.1 247.3
O2' C2' H2' C1' 122.0 123.6
H2' C2' O2' HO2' 306.6 56.3
H2' C2' C1' N9 331.4 37.4
H2' C2' C1' H1' 86.9 160.4
HO2' O2' C2' C1' 73.1 180.0
HO2' O2' C2' H2' 306.6 56.3
O4' C1' N9 C2' 122.2 114.1
O4' C1' N9 H1' 241.8 237.1
N9 C1' C2' H2' 331.4 37.4
C2' C1' N9 H1' 119.6 122.9
C8 N9 C1' C4 169.4 180.3
C1' N9 C8 N7 187.1 180.0
C1' N9 C8 H8 7.0 360.0
C1' N9 C4 C5 170.1 179.8
C1' N9 C4 N3 353.9 0.8
O4' C1' H1' C2' 242.1 246.0
O4' C1' H1' N9 121.6 122.9
H1' C1' C2' H2' 86.9 160.4
C2' C1' H1' N9 239.5 237.0
H1' C1' N9 C8 150.9 151.5
H1' C1' N9 C4 341.5 331.1
C8 N9 C1' H1' 150.9 151.5
C1' N9 C8 C4 189.0 179.7
C8 N9 C4 C5 358.4 359.6
C8 N9 C4 N3 182.2 180.6
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 4.5 0.0
C4 N9 C1' H1' 341.5 331.1
C1' N9 C4 C8 171.7 180.3
C4 N9 C8 N7 358.1 0.3
C4 N9 C8 H8 178.0 180.3
N7 C5 C4 N9 4.3 0.5
C6 C5 C4 N9 182.7 180.1
C5 C4 N9 N3 176.2 179.0
C2 N3 C4 N9 181.7 179.6
N7 C8 N9 C4 358.1 0.3
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 176.7 180.1
C8 N7 C5 C4 354.6 359.7
H8 C8 N9 C4 178.0 180.3
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 184.5 180.0
N9 C4 C5 N7 4.3 0.5
C5 N7 C8 H8 184.5 180.0
C6 C5 N7 C4 182.1 180.4
N7 C5 C6 N6 353.6 359.9
N7 C5 C6 N1 173.7 179.9
N7 C5 C4 N3 180.5 179.6
N9 C4 C5 C6 182.7 180.1
N7 C5 C6 C4 177.8 179.6
C6 C5 C4 N3 358.9 359.3
N6 C6 C5 N1 179.8 179.9
C5 C6 N6 HN61 180.0 180.1
C5 C6 N6 HN62 54.8 0.2
C5 C6 N1 C2 3.7 359.9
N9 C4 C5 N3 183.8 180.8
N7 C5 C4 C6 181.7 180.3
C4 C5 C6 N6 175.7 180.3
C4 C5 C6 N1 355.9 0.4
C2 N3 C4 C5 6.2 0.7
N6 C6 C5 C4 175.7 180.3
C5 C6 N6 N1 180.2 180.1
N6 C6 N1 C2 183.8 180.0
HN61 N6 C6 HN62 125.2 179.9
N1 C6 C5 C4 355.9 0.4
C5 C6 N1 N6 179.8 179.9
N1 C6 N6 HN61 359.8 0.0
N1 C6 N6 HN62 234.6 180.1
C6 N1 C2 N3 2.5 0.0
C6 N1 C2 H2 182.4 179.9
HN61 N6 C6 N1 359.8 0.0
C6 N6 HN61 HN62 234.7 180.1
HN62 N6 C6 N1 234.6 180.1
C6 N6 HN62 HN61 134.4 179.9
N3 C2 N1 H2 180.0 180.1
N1 C2 N3 C4 353.0 359.6
N9 C4 N3 C2 181.7 179.6
C5 C4 N3 C2 6.2 0.7
N1 C2 N3 H2 180.0 179.9
N1 C2 H2 N3 180.0 180.1
H2 C2 N3 C4 173.0 179.7
N9 C4 N3 C5 175.5 178.9
C4 N3 C2 H2 173.0 179.7