PDB Chemical Component SRO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SRO
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OH |
CZ3 |
1.360 |
1.360 |
| OH |
HOH |
0.950 |
0.967 |
| CZ3 |
CE3 |
1.303 |
1.380 |
| CZ3 |
CH2 |
1.395 |
1.393 |
| CH2 |
CZ2 |
1.380 |
1.376 |
| CH2 |
HH2 |
1.080 |
1.080 |
| CZ2 |
CE2 |
1.382 |
1.391 |
| CZ2 |
HZ2 |
1.080 |
1.080 |
| CE2 |
NE1 |
1.347 |
1.379 |
| CE2 |
CD2 |
1.386 |
1.407 |
| NE1 |
CD1 |
1.354 |
1.368 |
| NE1 |
HNE1 |
1.000 |
0.970 |
| CD1 |
CG |
1.388 |
1.342 |
| CD1 |
HD1 |
1.080 |
1.081 |
| CG |
CB |
1.520 |
1.507 |
| CG |
CD2 |
1.394 |
1.465 |
| CD2 |
CE3 |
1.295 |
1.397 |
| CE3 |
HE3 |
1.080 |
1.079 |
| CB |
CA |
1.539 |
1.530 |
| CB |
HB1 |
1.100 |
1.090 |
| CB |
HB2 |
1.100 |
1.090 |
| CA |
NZ |
1.459 |
1.469 |
| CA |
HA1 |
1.100 |
1.090 |
| CA |
HA2 |
1.100 |
1.090 |
| NZ |
HNZ1 |
1.000 |
1.009 |
| NZ |
HNZ2 |
1.000 |
1.009 |
Bond Angles for SRO
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CZ3 |
OH |
HOH |
109.5 |
114.0 |
| OH |
CZ3 |
CE3 |
120.9 |
119.9 |
| OH |
CZ3 |
CH2 |
117.1 |
119.9 |
| CH2 |
CZ3 |
CE3 |
122.0 |
120.3 |
| CZ3 |
CE3 |
CD2 |
119.6 |
119.6 |
| CZ3 |
CE3 |
HE3 |
120.2 |
120.2 |
| CZ3 |
CH2 |
CZ2 |
119.4 |
120.6 |
| CZ3 |
CH2 |
HH2 |
120.3 |
119.7 |
| CZ2 |
CH2 |
HH2 |
120.3 |
119.7 |
| CH2 |
CZ2 |
CE2 |
117.1 |
120.0 |
| CH2 |
CZ2 |
HZ2 |
121.5 |
120.0 |
| CE2 |
CZ2 |
HZ2 |
121.5 |
120.0 |
| CZ2 |
CE2 |
NE1 |
133.1 |
133.3 |
| CZ2 |
CE2 |
CD2 |
119.0 |
119.5 |
| NE1 |
CE2 |
CD2 |
107.9 |
107.1 |
| CE2 |
NE1 |
CD1 |
108.9 |
109.8 |
| CE2 |
NE1 |
HNE1 |
125.6 |
125.1 |
| CE2 |
CD2 |
CG |
108.4 |
106.1 |
| CE2 |
CD2 |
CE3 |
123.0 |
120.0 |
| CD1 |
NE1 |
HNE1 |
125.5 |
125.0 |
| NE1 |
CD1 |
CG |
109.5 |
110.0 |
| NE1 |
CD1 |
HD1 |
125.2 |
125.0 |
| CG |
CD1 |
HD1 |
125.2 |
125.0 |
| CD1 |
CG |
CB |
124.5 |
126.5 |
| CD1 |
CG |
CD2 |
105.3 |
107.0 |
| CD2 |
CG |
CB |
130.3 |
126.5 |
| CG |
CB |
CA |
109.2 |
109.5 |
| CG |
CB |
HB1 |
109.6 |
109.5 |
| CG |
CB |
HB2 |
109.6 |
109.5 |
| CG |
CD2 |
CE3 |
128.6 |
134.0 |
| CD2 |
CE3 |
HE3 |
120.2 |
120.2 |
| CA |
CB |
HB1 |
109.6 |
109.5 |
| CA |
CB |
HB2 |
109.6 |
109.5 |
| CB |
CA |
NZ |
111.1 |
109.5 |
| CB |
CA |
HA1 |
109.0 |
109.5 |
| CB |
CA |
HA2 |
108.6 |
109.5 |
| HB1 |
CB |
HB2 |
109.3 |
109.4 |
| NZ |
CA |
HA1 |
108.9 |
109.5 |
| NZ |
CA |
HA2 |
108.6 |
109.4 |
| CA |
NZ |
HNZ1 |
109.5 |
111.0 |
| CA |
NZ |
HNZ2 |
109.5 |
111.0 |
| HA1 |
CA |
HA2 |
110.7 |
109.5 |
| HNZ1 |
NZ |
HNZ2 |
109.5 |
111.0 |
Torsion Angles for SRO
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CH2 |
CZ3 |
OH |
CE3 |
180.3 |
180.3 |
| OH |
CZ3 |
CE3 |
CD2 |
179.8 |
179.8 |
| OH |
CZ3 |
CE3 |
HE3 |
359.9 |
360.0 |
| OH |
CZ3 |
CH2 |
CZ2 |
179.9 |
180.0 |
| OH |
CZ3 |
CH2 |
HH2 |
359.9 |
359.9 |
| HOH |
OH |
CZ3 |
CE3 |
301.3 |
90.0 |
| HOH |
OH |
CZ3 |
CH2 |
121.7 |
270.3 |
| CE3 |
CZ3 |
OH |
HOH |
301.3 |
90.0 |
| OH |
CZ3 |
CE3 |
CH2 |
180.4 |
180.3 |
| CE3 |
CZ3 |
CH2 |
CZ2 |
0.3 |
0.3 |
| CE3 |
CZ3 |
CH2 |
HH2 |
180.3 |
180.2 |
| CE2 |
CD2 |
CE3 |
CZ3 |
0.9 |
0.5 |
| CG |
CD2 |
CE3 |
CZ3 |
180.3 |
180.1 |
| CD2 |
CE3 |
CZ3 |
HE3 |
180.0 |
179.8 |
| CH2 |
CZ3 |
OH |
HOH |
121.7 |
270.3 |
| OH |
CZ3 |
CH2 |
CE3 |
179.7 |
179.7 |
| CH2 |
CZ3 |
CE3 |
CD2 |
359.5 |
359.4 |
| CH2 |
CZ3 |
CE3 |
HE3 |
179.5 |
179.7 |
| CZ2 |
CH2 |
CZ3 |
HH2 |
180.0 |
180.1 |
| CZ3 |
CH2 |
CZ2 |
CE2 |
359.6 |
359.9 |
| CZ3 |
CH2 |
CZ2 |
HZ2 |
179.6 |
179.9 |
| CZ2 |
CH2 |
CZ3 |
CE3 |
0.3 |
0.3 |
| CZ3 |
CH2 |
CZ2 |
HH2 |
180.0 |
179.9 |
| CE2 |
CZ2 |
CH2 |
HZ2 |
180.0 |
180.0 |
| CH2 |
CZ2 |
CE2 |
NE1 |
178.5 |
180.1 |
| CH2 |
CZ2 |
CE2 |
CD2 |
0.8 |
0.1 |
| HH2 |
CH2 |
CZ3 |
CE3 |
180.3 |
180.2 |
| CZ3 |
CH2 |
HH2 |
CZ2 |
180.0 |
180.1 |
| HH2 |
CH2 |
CZ2 |
CE2 |
179.6 |
180.0 |
| HH2 |
CH2 |
CZ2 |
HZ2 |
359.6 |
0.1 |
| CE2 |
CZ2 |
CH2 |
HH2 |
179.6 |
180.0 |
| CH2 |
CZ2 |
CE2 |
HZ2 |
180.0 |
180.0 |
| NE1 |
CE2 |
CZ2 |
CD2 |
177.7 |
180.0 |
| CZ2 |
CE2 |
NE1 |
CD1 |
181.3 |
180.0 |
| CZ2 |
CE2 |
NE1 |
HNE1 |
1.4 |
359.9 |
| CZ2 |
CE2 |
CD2 |
CG |
179.4 |
180.0 |
| CZ2 |
CE2 |
CD2 |
CE3 |
358.9 |
359.7 |
| HZ2 |
CZ2 |
CH2 |
HH2 |
359.6 |
0.1 |
| CH2 |
CZ2 |
HZ2 |
CE2 |
180.0 |
180.0 |
| HZ2 |
CZ2 |
CE2 |
NE1 |
358.5 |
0.0 |
| HZ2 |
CZ2 |
CE2 |
CD2 |
180.8 |
180.0 |
| NE1 |
CE2 |
CZ2 |
HZ2 |
358.5 |
0.0 |
| CZ2 |
CE2 |
NE1 |
CD2 |
182.1 |
180.0 |
| NE1 |
CE2 |
CD2 |
CG |
1.2 |
0.0 |
| NE1 |
CE2 |
CD2 |
CE3 |
180.7 |
179.7 |
| CD1 |
NE1 |
CE2 |
HNE1 |
180.0 |
180.1 |
| CE2 |
NE1 |
CD1 |
CG |
0.1 |
360.0 |
| CE2 |
NE1 |
CD1 |
HD1 |
180.1 |
180.0 |
| CZ3 |
CE3 |
CD2 |
CE2 |
0.9 |
0.5 |
| CD2 |
CE2 |
CZ2 |
HZ2 |
180.8 |
180.0 |
| CZ2 |
CE2 |
CD2 |
NE1 |
178.2 |
180.0 |
| CD2 |
CE2 |
NE1 |
CD1 |
359.2 |
0.0 |
| CD2 |
CE2 |
NE1 |
HNE1 |
179.3 |
179.9 |
| CD1 |
CG |
CD2 |
CE2 |
358.9 |
359.9 |
| CE2 |
CD2 |
CG |
CB |
179.3 |
180.1 |
| CG |
CD2 |
CE2 |
CE3 |
180.5 |
180.3 |
| CE2 |
CD2 |
CE3 |
HE3 |
180.9 |
180.3 |
| CD1 |
NE1 |
CE2 |
CD2 |
359.2 |
0.0 |
| CE2 |
NE1 |
CD1 |
HNE1 |
180.0 |
179.9 |
| CG |
CD1 |
NE1 |
HD1 |
180.0 |
180.0 |
| NE1 |
CD1 |
CG |
CB |
180.3 |
179.9 |
| NE1 |
CD1 |
CG |
CD2 |
0.6 |
0.1 |
| HNE1 |
NE1 |
CE2 |
CD2 |
179.3 |
179.9 |
| CE2 |
NE1 |
HNE1 |
CD1 |
180.0 |
180.1 |
| HNE1 |
NE1 |
CD1 |
CG |
180.0 |
180.1 |
| HNE1 |
NE1 |
CD1 |
HD1 |
0.0 |
0.1 |
| CE2 |
CD2 |
CG |
CD1 |
358.9 |
359.9 |
| CG |
CD1 |
NE1 |
HNE1 |
180.0 |
180.1 |
| NE1 |
CD1 |
CG |
HD1 |
180.0 |
180.0 |
| CD2 |
CG |
CD1 |
CB |
180.4 |
180.1 |
| CD1 |
CG |
CB |
CA |
26.3 |
265.0 |
| CD1 |
CG |
CB |
HB1 |
146.3 |
25.1 |
| CD1 |
CG |
CB |
HB2 |
266.2 |
145.0 |
| CD1 |
CG |
CD2 |
CE3 |
179.4 |
180.3 |
| HD1 |
CD1 |
NE1 |
HNE1 |
0.0 |
0.1 |
| NE1 |
CD1 |
HD1 |
CG |
180.0 |
180.0 |
| HD1 |
CD1 |
CG |
CB |
0.3 |
359.9 |
| HD1 |
CD1 |
CG |
CD2 |
180.7 |
180.0 |
| CB |
CG |
CD1 |
HD1 |
0.3 |
359.9 |
| CD1 |
CG |
CB |
CD2 |
180.5 |
180.1 |
| CB |
CG |
CD2 |
CE3 |
359.8 |
0.4 |
| CA |
CB |
CG |
HB1 |
240.0 |
239.9 |
| CA |
CB |
CG |
HB2 |
120.1 |
120.0 |
| CG |
CB |
CA |
NZ |
174.6 |
180.0 |
| CG |
CB |
CA |
HA1 |
294.6 |
300.0 |
| CG |
CB |
CA |
HA2 |
55.2 |
60.0 |
| HB1 |
CB |
CG |
HB2 |
240.1 |
240.1 |
| CZ3 |
CE3 |
CD2 |
CG |
180.3 |
180.1 |
| CE2 |
CD2 |
CG |
CE3 |
179.5 |
179.6 |
| CD2 |
CG |
CD1 |
HD1 |
180.7 |
180.0 |
| CD1 |
CG |
CD2 |
CB |
179.6 |
179.9 |
| CD2 |
CG |
CB |
CA |
205.8 |
84.9 |
| CD2 |
CG |
CB |
HB1 |
325.8 |
205.0 |
| CD2 |
CG |
CB |
HB2 |
85.7 |
324.9 |
| CG |
CD2 |
CE3 |
HE3 |
0.3 |
359.9 |
| CZ3 |
CE3 |
CD2 |
HE3 |
180.0 |
180.2 |
| CE2 |
CD2 |
CE3 |
CG |
180.6 |
180.4 |
| CE3 |
CD2 |
CG |
CB |
359.8 |
0.4 |
| CZ3 |
CE3 |
HE3 |
CD2 |
180.0 |
179.8 |
| CG |
CB |
CA |
HB1 |
120.0 |
120.0 |
| CG |
CB |
CA |
HB2 |
239.9 |
240.0 |
| HB1 |
CB |
CA |
HB2 |
119.9 |
119.9 |
| NZ |
CA |
CB |
HA1 |
240.0 |
240.0 |
| NZ |
CA |
CB |
HA2 |
119.4 |
119.9 |
| CB |
CA |
NZ |
HNZ1 |
91.5 |
56.1 |
| CB |
CA |
NZ |
HNZ2 |
211.5 |
180.0 |
| HA1 |
CA |
CB |
HA2 |
239.4 |
240.0 |
| CG |
CB |
HB1 |
CA |
240.3 |
239.9 |
| CG |
CB |
HB1 |
HB2 |
120.1 |
120.0 |
| CA |
CB |
HB1 |
HB2 |
239.9 |
240.0 |
| HB1 |
CB |
CA |
NZ |
54.6 |
60.0 |
| HB1 |
CB |
CA |
HA1 |
174.6 |
180.0 |
| HB1 |
CB |
CA |
HA2 |
295.3 |
300.0 |
| CG |
CB |
HB2 |
CA |
119.8 |
120.0 |
| CG |
CB |
HB2 |
HB1 |
239.9 |
240.1 |
| CA |
CB |
HB2 |
HB1 |
120.1 |
120.0 |
| HB2 |
CB |
CA |
NZ |
294.7 |
300.0 |
| HB2 |
CB |
CA |
HA1 |
54.7 |
60.0 |
| HB2 |
CB |
CA |
HA2 |
175.3 |
180.1 |
| NZ |
CA |
CB |
HB1 |
54.6 |
60.0 |
| NZ |
CA |
CB |
HB2 |
294.7 |
300.0 |
| CB |
CA |
NZ |
HA1 |
120.0 |
120.0 |
| CB |
CA |
NZ |
HA2 |
240.6 |
240.0 |
| HA1 |
CA |
NZ |
HA2 |
120.6 |
120.0 |
| HNZ1 |
NZ |
CA |
HNZ2 |
240.0 |
236.1 |
| HA1 |
CA |
CB |
HB1 |
174.6 |
180.0 |
| HA1 |
CA |
CB |
HB2 |
54.7 |
60.0 |
| CB |
CA |
HA1 |
NZ |
238.7 |
240.0 |
| CB |
CA |
HA1 |
HA2 |
119.4 |
120.0 |
| NZ |
CA |
HA1 |
HA2 |
240.7 |
240.0 |
| HA1 |
CA |
NZ |
HNZ1 |
331.5 |
296.1 |
| HA1 |
CA |
NZ |
HNZ2 |
91.5 |
60.0 |
| HA2 |
CA |
CB |
HB1 |
295.3 |
300.0 |
| HA2 |
CA |
CB |
HB2 |
175.3 |
180.1 |
| CB |
CA |
HA2 |
NZ |
120.9 |
120.0 |
| CB |
CA |
HA2 |
HA1 |
240.4 |
240.0 |
| NZ |
CA |
HA2 |
HA1 |
119.5 |
120.0 |
| HA2 |
CA |
NZ |
HNZ1 |
210.9 |
176.0 |
| HA2 |
CA |
NZ |
HNZ2 |
330.9 |
300.0 |
| HNZ1 |
NZ |
CA |
HA1 |
331.5 |
296.1 |
| HNZ1 |
NZ |
CA |
HA2 |
210.9 |
176.0 |
| CA |
NZ |
HNZ1 |
HNZ2 |
120.0 |
124.0 |
| HNZ2 |
NZ |
CA |
HA1 |
91.5 |
60.0 |
| HNZ2 |
NZ |
CA |
HA2 |
330.9 |
300.0 |
| CA |
NZ |
HNZ2 |
HNZ1 |
239.9 |
236.0 |