PDB Chemical Component SRA

Ideal Model

Chemical Description

Name ADENOSINE -5'-THIO-MONOPHOSPHATE
Formula C10 H14 N5 O6 P S
Formal charge 0
Molecular weight 363.287 g/mol
Component type RNA LINKING
Nonstandard Parent Id A

Chemical features

Atom count 37
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Observed leaving atoms OP3 HO3'
Bond count 39
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 5'-O-thiophosphonoadenosine
Systematic name (OpenEye OEToolkits) (2R,3R,4S,5R)-2-(6-aminopurin-9-yl)-5-(dihydroxyphosphinothioyloxymethyl)oxolane-3,4-diol

Chemical Descriptors

Stereo SMILES (CACTVS) Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=S)[C@@H](O)[C@H]3O
SMILES (CACTVS) Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=S)[CH](O)[CH]3O
Stereo SMILES (OpenEye) c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=S)(O)O)O)O)N
InChI descriptor InChI=1S/C10H14N5O6PS/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(21-10)1-20-22(18,19)23/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,23)/t4-,6-,7-,10-/m1/s1
InChIKey descriptor UBCPYVAQZGCDJO-KQYNXXCUSA-N

Status Information

Last modified 2011-06-04
Created 1999-09-15
Release status REL
Model PDB code 1D0T
Processing site RCSB