PDB Chemical Component SPZ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SPZ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1B C1C 1.471 1.469
C1C C1A 1.530 1.530
C1C C1D 1.530 1.530
C1D C1E 1.530 1.530
C1E N1F 1.470 1.469
N1F C1G 1.470 1.469
C1G C1H 1.531 1.531
C1H C1I 1.530 1.529
C1I C1J 1.529 1.530
C1J N1K 1.471 1.468
N1K C1L 1.469 1.469
C1L C1M 1.530 1.530
C1M C1N 1.530 1.530
C1N C1P 1.530 1.530
C1N N1O 1.470 1.469
N1B HN1B 1.000 1.009
N1B HN1A 1.000 1.009
C1C H1C 1.100 1.090
C1A H1A 1.100 1.090
C1A H1AA 1.100 1.091
C1A H1AB 1.100 1.090
C1D H1D 1.100 1.091
C1D H1DA 1.100 1.089
C1E H1E 1.100 1.091
C1E H1EA 1.100 1.090
N1F HN1F 1.000 1.009
C1G H1G 1.100 1.089
C1G H1GA 1.100 1.091
C1H H1H 1.100 1.089
C1H H1HA 1.100 1.091
C1I H1I 1.100 1.090
C1I H1IA 1.100 1.090
C1J H1J 1.100 1.091
C1J H1JA 1.100 1.090
N1K HN1K 1.000 1.009
C1L H1L 1.100 1.091
C1L H1LA 1.100 1.090
C1M H1M 1.100 1.091
C1M H1MA 1.100 1.090
C1N H1N 1.100 1.090
C1P H1P 1.100 1.090
C1P H1PA 1.100 1.090
C1P H1PB 1.100 1.090
N1O HN1O 1.000 1.009
N1O HN1C 1.000 1.009

Bond Angles for SPZ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N1B C1C C1A 109.6 109.5
N1B C1C C1D 109.2 109.5
C1C N1B HN1B 109.5 111.0
C1C N1B HN1A 109.4 111.0
N1B C1C H1C 110.2 109.5
C1A C1C C1D 111.1 109.4
C1A C1C H1C 108.2 109.5
C1C C1A H1A 109.5 109.5
C1C C1A H1AA 109.4 109.5
C1C C1A H1AB 109.5 109.5
C1C C1D C1E 111.0 109.5
C1D C1C H1C 108.6 109.5
C1C C1D H1D 109.0 109.5
C1C C1D H1DA 108.6 109.5
C1D C1E N1F 110.0 109.5
C1E C1D H1D 109.0 109.5
C1E C1D H1DA 108.6 109.5
C1D C1E H1E 109.3 109.5
C1D C1E H1EA 109.2 109.5
C1E N1F C1G 109.4 111.0
N1F C1E H1E 109.3 109.4
N1F C1E H1EA 109.2 109.5
C1E N1F HN1F 109.5 111.0
N1F C1G C1H 109.9 109.5
C1G N1F HN1F 109.5 111.0
N1F C1G H1G 109.3 109.5
N1F C1G H1GA 109.2 109.5
C1G C1H C1I 110.7 109.5
C1H C1G H1G 109.3 109.5
C1H C1G H1GA 109.2 109.4
C1G C1H H1H 109.0 109.5
C1G C1H H1HA 108.8 109.4
C1H C1I C1J 111.1 109.5
C1I C1H H1H 109.1 109.5
C1I C1H H1HA 108.8 109.5
C1H C1I H1I 108.9 109.5
C1H C1I H1IA 108.5 109.5
C1I C1J N1K 110.4 109.5
C1J C1I H1I 109.0 109.4
C1J C1I H1IA 108.6 109.5
C1I C1J H1J 109.2 109.4
C1I C1J H1JA 109.0 109.5
C1J N1K C1L 110.5 111.0
N1K C1J H1J 109.2 109.5
N1K C1J H1JA 109.0 109.5
C1J N1K HN1K 109.1 111.0
N1K C1L C1M 110.2 109.5
C1L N1K HN1K 109.1 111.0
N1K C1L H1L 109.2 109.4
N1K C1L H1LA 109.0 109.5
C1L C1M C1N 112.1 109.5
C1M C1L H1L 109.3 109.5
C1M C1L H1LA 109.1 109.5
C1L C1M H1M 108.6 109.5
C1L C1M H1MA 108.0 109.5
C1M C1N C1P 111.2 109.5
C1M C1N N1O 109.6 109.5
C1N C1M H1M 108.6 109.4
C1N C1M H1MA 108.0 109.5
C1M C1N H1N 108.2 109.4
C1P C1N N1O 109.4 109.5
C1P C1N H1N 108.4 109.5
C1N C1P H1P 109.5 109.5
C1N C1P H1PA 109.4 109.5
C1N C1P H1PB 109.4 109.5
N1O C1N H1N 110.0 109.5
C1N N1O HN1O 109.5 111.0
C1N N1O HN1C 109.4 111.0
HN1B N1B HN1A 109.5 110.9
H1A C1A H1AA 109.4 109.5
H1A C1A H1AB 109.5 109.5
H1AA C1A H1AB 109.5 109.4
H1D C1D H1DA 110.6 109.5
H1E C1E H1EA 109.9 109.4
H1G C1G H1GA 109.8 109.5
H1H C1H H1HA 110.4 109.5
H1I C1I H1IA 110.8 109.5
H1J C1J H1JA 110.1 109.4
H1L C1L H1LA 110.0 109.4
H1M C1M H1MA 111.6 109.4
H1P C1P H1PA 109.5 109.4
H1P C1P H1PB 109.5 109.5
H1PA C1P H1PB 109.5 109.5
HN1O N1O HN1C 109.5 111.0

Torsion Angles for SPZ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C1A C1C N1B C1D 238.2 240.0
C1A C1C N1B H1C 119.0 120.0
N1B C1C C1A H1A 8.9 60.0
N1B C1C C1A H1AA 128.8 180.0
N1B C1C C1A H1AB 248.9 299.9
N1B C1C C1D C1E 297.8 65.0
C1D C1C N1B H1C 240.8 240.0
N1B C1C C1D H1D 57.8 185.0
N1B C1C C1D H1DA 178.5 305.0
HN1B N1B C1C HN1A 240.0 236.1
N1B C1C C1A C1D 120.7 120.0
C1A C1C N1B HN1B 299.5 296.1
C1A C1C N1B HN1A 59.5 60.0
N1B C1C C1A H1C 239.8 240.0
C1A C1C C1D C1E 58.7 185.0
C1D C1C C1A H1C 119.2 120.0
C1A C1C C1D H1D 178.8 305.0
C1A C1C C1D H1DA 299.4 65.0
H1A C1A C1C H1AA 240.0 240.0
H1A C1A C1C H1AB 120.0 120.0
H1AA C1A C1C H1AB 240.0 240.1
N1B C1C C1D C1A 239.1 240.0
C1D C1C N1B HN1B 61.3 56.1
C1D C1C N1B HN1A 181.3 179.9
N1B C1C C1D H1C 120.2 120.0
C1A C1C C1D H1C 241.1 240.0
C1D C1C C1A H1A 248.2 300.0
C1D C1C C1A H1AA 8.2 60.0
C1D C1C C1A H1AB 128.2 179.9
C1C C1D C1E N1F 173.5 180.0
C1E C1D C1C H1D 240.0 240.0
C1E C1D C1C H1DA 119.4 120.0
C1C C1D C1E H1E 293.4 300.0
C1C C1D C1E H1EA 53.7 60.0
H1D C1D C1C H1DA 239.4 240.0
C1E C1D C1C H1C 177.7 305.0
C1C C1D C1E H1D 120.0 120.0
C1C C1D C1E H1DA 240.6 240.0
C1D C1E N1F C1G 288.8 180.0
N1F C1E C1D H1E 240.0 240.0
N1F C1E C1D H1EA 119.8 120.1
C1D C1E N1F HN1F 48.8 303.9
H1D C1D C1E H1DA 120.6 120.0
H1E C1E C1D H1EA 239.8 240.0
N1F C1E C1D H1D 53.4 60.0
N1F C1E C1D H1DA 292.8 300.0
C1D C1E N1F H1E 120.0 120.0
C1D C1E N1F H1EA 240.2 239.9
C1E N1F C1G C1H 170.5 180.0
C1G N1F C1E HN1F 240.0 236.0
C1E N1F C1G H1G 290.5 300.0
C1E N1F C1G H1GA 50.6 60.0
H1E C1E N1F H1EA 120.2 119.9
C1G N1F C1E H1E 168.8 60.0
C1G N1F C1E H1EA 48.6 300.0
C1E N1F C1G HN1F 120.0 123.9
N1F C1G C1H C1I 303.2 180.0
C1H C1G N1F H1G 240.0 240.0
C1H C1G N1F H1GA 119.8 119.9
N1F C1G C1H H1H 63.2 300.0
N1F C1G C1H H1HA 183.7 60.0
H1G C1G N1F H1GA 239.8 240.0
C1H C1G N1F HN1F 50.5 56.0
N1F C1G C1H H1G 120.0 120.0
N1F C1G C1H H1GA 240.2 240.0
C1G C1H C1I C1J 189.7 180.0
C1I C1H C1G H1H 240.0 240.0
C1I C1H C1G H1HA 119.5 120.0
C1G C1H C1I H1I 309.7 300.0
C1G C1H C1I H1IA 70.4 60.0
H1G C1G C1H H1GA 120.2 120.0
H1H C1H C1G H1HA 239.5 240.0
C1I C1H C1G H1G 183.2 60.0
C1I C1H C1G H1GA 63.0 300.0
C1G C1H C1I H1H 120.0 120.0
C1G C1H C1I H1HA 240.5 240.1
C1H C1I C1J N1K 300.8 180.0
C1J C1I C1H H1I 240.0 240.1
C1J C1I C1H H1IA 119.3 120.0
C1H C1I C1J H1J 60.7 300.0
C1H C1I C1J H1JA 181.1 60.0
H1H C1H C1I H1HA 120.5 120.0
H1I C1I C1H H1IA 239.3 240.0
C1J C1I C1H H1H 69.7 60.0
C1J C1I C1H H1HA 309.2 300.0
C1H C1I C1J H1I 120.0 120.0
C1H C1I C1J H1IA 240.7 240.0
C1I C1J N1K C1L 279.8 180.0
N1K C1J C1I H1J 240.0 240.0
N1K C1J C1I H1JA 119.7 120.1
C1I C1J N1K HN1K 39.8 303.9
H1I C1I C1J H1IA 120.7 120.0
H1J C1J C1I H1JA 239.6 240.1
N1K C1J C1I H1I 180.8 60.0
N1K C1J C1I H1IA 60.0 300.1
C1I C1J N1K H1J 120.0 120.0
C1I C1J N1K H1JA 240.4 240.0
C1J N1K C1L C1M 297.7 180.0
C1L N1K C1J HN1K 240.0 236.1
C1J N1K C1L H1L 57.8 300.0
C1J N1K C1L H1LA 178.1 59.9
H1J C1J N1K H1JA 120.3 120.0
C1L N1K C1J H1J 159.8 60.0
C1L N1K C1J H1JA 39.5 300.0
C1J N1K C1L HN1K 120.0 123.9
N1K C1L C1M C1N 302.2 180.0
C1M C1L N1K H1L 240.0 240.0
C1M C1L N1K H1LA 119.7 120.1
N1K C1L C1M H1M 62.2 300.0
N1K C1L C1M H1MA 183.3 59.9
H1L C1L N1K H1LA 239.7 240.1
C1M C1L N1K HN1K 177.7 56.1
N1K C1L C1M H1L 120.0 120.0
N1K C1L C1M H1LA 240.3 239.9
C1L C1M C1N C1P 188.9 185.0
C1L C1M C1N N1O 67.8 64.9
C1N C1M C1L H1M 240.0 240.1
C1N C1M C1L H1MA 118.9 120.1
C1L C1M C1N H1N 307.8 305.0
H1L C1L C1M H1LA 120.3 120.0
H1M C1M C1L H1MA 238.9 240.0
C1N C1M C1L H1L 182.2 60.1
C1N C1M C1L H1LA 61.9 300.1
C1L C1M C1N H1M 120.0 120.0
C1L C1M C1N H1MA 241.1 239.9
C1P C1N C1M N1O 121.1 120.0
C1P C1N C1M H1N 241.1 240.0
C1M C1N C1P H1P 358.8 60.0
C1M C1N C1P H1PA 118.8 180.0
C1M C1N C1P H1PB 238.8 300.0
N1O C1N C1M H1N 120.0 120.0
C1M C1N N1O HN1O 262.7 296.1
C1M C1N N1O HN1C 22.7 60.0
H1M C1M C1N H1MA 121.1 119.9
C1M C1N C1P N1O 238.8 239.9
C1P C1N C1M H1M 68.9 65.0
C1P C1N C1M H1MA 307.7 305.1
C1M C1N C1P H1N 118.8 119.9
N1O C1N C1P H1N 240.0 240.0
C1P C1N N1O HN1O 140.5 176.1
C1P C1N N1O HN1C 260.5 300.0
H1P C1P C1N H1PA 240.0 240.0
H1P C1P C1N H1PB 120.0 120.0
H1PA C1P C1N H1PB 240.0 240.0
C1M C1N N1O C1P 122.2 120.0
N1O C1N C1M H1M 307.8 305.0
N1O C1N C1M H1MA 186.7 185.0
C1M C1N N1O H1N 241.1 240.1
C1P C1N N1O H1N 119.0 120.0
N1O C1N C1P H1P 120.1 180.1
N1O C1N C1P H1PA 240.1 300.0
N1O C1N C1P H1PB 0.1 60.0
HN1O N1O C1N HN1C 240.0 236.1
HN1B N1B C1C C1A 299.5 296.1
HN1B N1B C1C C1D 61.3 56.1
C1C N1B HN1B HN1A 120.0 123.9
HN1B N1B C1C H1C 180.5 176.0
HN1A N1B C1C C1A 59.5 60.0
HN1A N1B C1C C1D 181.3 179.9
C1C N1B HN1A HN1B 240.0 236.1
HN1A N1B C1C H1C 300.5 299.9
N1B C1C H1C C1A 119.8 120.0
N1B C1C H1C C1D 240.5 240.0
H1C C1C N1B HN1B 180.5 176.0
H1C C1C N1B HN1A 300.5 299.9
C1A C1C H1C C1D 120.7 120.0
H1C C1C C1A H1A 129.0 180.0
H1C C1C C1A H1AA 249.0 300.0
H1C C1C C1A H1AB 9.0 60.0
H1C C1C C1D C1E 177.7 305.0
H1C C1C C1D H1D 297.7 65.0
H1C C1C C1D H1DA 58.3 185.0
H1A C1A C1C C1D 248.2 300.0
H1A C1A C1C H1C 129.0 180.0
C1C C1A H1A H1AA 120.0 120.0
C1C C1A H1A H1AB 240.0 240.0
H1AA C1A H1A H1AB 120.0 119.9
H1AA C1A C1C C1D 8.2 60.0
H1AA C1A C1C H1C 249.0 300.0
C1C C1A H1AA H1A 240.0 240.0
C1C C1A H1AA H1AB 120.0 119.9
H1A C1A H1AA H1AB 240.0 240.0
H1AB C1A C1C C1D 128.2 179.9
H1AB C1A C1C H1C 9.0 60.0
C1C C1A H1AB H1A 120.0 120.0
C1C C1A H1AB H1AA 240.0 240.0
H1A C1A H1AB H1AA 120.0 120.0
C1C C1D H1D C1E 238.8 240.0
H1D C1D C1C H1C 297.7 65.0
C1C C1D H1D H1DA 119.4 120.0
H1D C1D C1E N1F 53.4 60.0
C1E C1D H1D H1DA 240.6 240.0
H1D C1D C1E H1E 173.4 180.0
H1D C1D C1E H1EA 293.6 300.0
C1C C1D H1DA C1E 120.8 120.0
H1DA C1D C1C H1C 58.3 185.0
C1C C1D H1DA H1D 240.4 240.0
H1DA C1D C1E N1F 292.8 300.0
C1E C1D H1DA H1D 119.6 120.0
H1DA C1D C1E H1E 52.8 60.0
H1DA C1D C1E H1EA 173.0 180.0
C1D C1E H1E N1F 239.6 240.0
H1E C1E C1D H1D 173.4 180.0
H1E C1E C1D H1DA 52.8 60.0
C1D C1E H1E H1EA 119.8 120.0
H1E C1E N1F C1G 168.8 60.0
N1F C1E H1E H1EA 240.2 240.0
H1E C1E N1F HN1F 288.8 183.9
C1D C1E H1EA N1F 120.3 120.1
H1EA C1E C1D H1D 293.6 300.0
H1EA C1E C1D H1DA 173.0 180.0
C1D C1E H1EA H1E 240.1 240.0
H1EA C1E N1F C1G 48.6 300.0
N1F C1E H1EA H1E 119.8 119.9
H1EA C1E N1F HN1F 168.6 64.0
C1E N1F HN1F C1G 240.0 236.0
HN1F N1F C1E H1E 288.8 183.9
HN1F N1F C1E H1EA 168.6 64.0
HN1F N1F C1G C1H 50.5 56.0
HN1F N1F C1G H1G 170.5 176.1
HN1F N1F C1G H1GA 290.6 296.1
N1F C1G H1G C1H 239.6 240.0
H1G C1G N1F HN1F 170.5 176.1
N1F C1G H1G H1GA 119.8 120.0
H1G C1G C1H C1I 183.2 60.0
C1H C1G H1G H1GA 240.2 240.1
H1G C1G C1H H1H 303.2 180.0
H1G C1G C1H H1HA 63.7 300.0
N1F C1G H1GA C1H 120.2 120.0
H1GA C1G N1F HN1F 290.6 296.1
N1F C1G H1GA H1G 240.1 239.9
H1GA C1G C1H C1I 63.0 300.0
C1H C1G H1GA H1G 119.9 120.0
H1GA C1G C1H H1H 183.0 60.0
H1GA C1G C1H H1HA 303.5 180.0
C1G C1H H1H C1I 239.0 240.0
H1H C1H C1G H1G 303.2 180.0
H1H C1H C1G H1GA 183.0 60.0
C1G C1H H1H H1HA 119.5 119.9
H1H C1H C1I C1J 69.7 60.0
C1I C1H H1H H1HA 240.5 240.0
H1H C1H C1I H1I 189.7 180.0
H1H C1H C1I H1IA 310.4 300.0
C1G C1H H1HA C1I 120.7 120.0
H1HA C1H C1G H1G 63.7 300.0
H1HA C1H C1G H1GA 303.5 180.0
C1G C1H H1HA H1H 240.4 240.0
H1HA C1H C1I C1J 309.2 300.0
C1I C1H H1HA H1H 119.7 120.1
H1HA C1H C1I H1I 69.2 59.9
H1HA C1H C1I H1IA 189.9 180.0
C1H C1I H1I C1J 238.7 240.0
H1I C1I C1H H1H 189.7 180.0
H1I C1I C1H H1HA 69.2 59.9
C1H C1I H1I H1IA 119.3 120.1
H1I C1I C1J N1K 180.8 60.0
C1J C1I H1I H1IA 240.6 240.0
H1I C1I C1J H1J 300.8 180.0
H1I C1I C1J H1JA 61.1 300.0
C1H C1I H1IA C1J 120.9 120.0
H1IA C1I C1H H1H 310.4 300.0
H1IA C1I C1H H1HA 189.9 180.0
C1H C1I H1IA H1I 240.5 240.0
H1IA C1I C1J N1K 60.0 300.1
C1J C1I H1IA H1I 119.6 119.9
H1IA C1I C1J H1J 180.0 60.1
H1IA C1I C1J H1JA 300.4 180.0
C1I C1J H1J N1K 239.3 240.0
H1J C1J C1I H1I 300.8 180.0
H1J C1J C1I H1IA 180.0 60.1
C1I C1J H1J H1JA 119.6 119.9
H1J C1J N1K C1L 159.8 60.0
N1K C1J H1J H1JA 240.4 240.0
H1J C1J N1K HN1K 279.8 183.9
C1I C1J H1JA N1K 120.5 120.1
H1JA C1J C1I H1I 61.1 300.0
H1JA C1J C1I H1IA 300.4 180.0
C1I C1J H1JA H1J 240.2 240.1
H1JA C1J N1K C1L 39.5 300.0
N1K C1J H1JA H1J 119.7 120.0
H1JA C1J N1K HN1K 159.5 63.9
C1J N1K HN1K C1L 239.2 236.0
HN1K N1K C1J H1J 279.8 183.9
HN1K N1K C1J H1JA 159.5 63.9
HN1K N1K C1L C1M 177.7 56.1
HN1K N1K C1L H1L 297.8 176.1
HN1K N1K C1L H1LA 58.1 296.0
N1K C1L H1L C1M 239.4 240.0
H1L C1L N1K HN1K 297.8 176.1
N1K C1L H1L H1LA 119.7 120.0
H1L C1L C1M C1N 182.2 60.1
C1M C1L H1L H1LA 240.3 240.0
H1L C1L C1M H1M 302.2 180.0
H1L C1L C1M H1MA 63.3 300.0
N1K C1L H1LA C1M 120.4 120.1
H1LA C1L N1K HN1K 58.1 296.0
N1K C1L H1LA H1L 240.2 240.1
H1LA C1L C1M C1N 61.9 300.1
C1M C1L H1LA H1L 119.8 120.0
H1LA C1L C1M H1M 181.9 60.0
H1LA C1L C1M H1MA 303.0 180.0
C1L C1M H1M C1N 237.8 240.0
H1M C1M C1L H1L 302.2 180.0
H1M C1M C1L H1LA 181.9 60.0
C1L C1M H1M H1MA 118.9 120.0
H1M C1M C1N C1P 68.9 65.0
H1M C1M C1N N1O 307.8 305.0
C1N C1M H1M H1MA 241.1 240.0
H1M C1M C1N H1N 187.8 185.0
C1L C1M H1MA C1N 121.5 120.1
H1MA C1M C1L H1L 63.3 300.0
H1MA C1M C1L H1LA 303.0 180.0
C1L C1M H1MA H1M 240.7 240.0
H1MA C1M C1N C1P 307.7 305.1
H1MA C1M C1N N1O 186.7 185.0
C1N C1M H1MA H1M 119.3 119.9
H1MA C1M C1N H1N 66.7 65.0
C1M C1N H1N C1P 239.3 240.0
C1M C1N H1N N1O 119.7 120.0
H1N C1N C1M H1M 187.8 185.0
H1N C1N C1M H1MA 66.7 65.0
C1P C1N H1N N1O 240.4 240.0
H1N C1N C1P H1P 240.0 300.1
H1N C1N C1P H1PA 0.0 60.0
H1N C1N C1P H1PB 120.1 180.0
H1N C1N N1O HN1O 21.6 56.1
H1N C1N N1O HN1C 141.6 180.0
H1P C1P C1N N1O 120.1 180.1
H1P C1P C1N H1N 240.0 300.1
C1N C1P H1P H1PA 120.0 120.0
C1N C1P H1P H1PB 240.0 240.0
H1PA C1P H1P H1PB 120.1 120.0
H1PA C1P C1N N1O 240.1 300.0
H1PA C1P C1N H1N 0.0 60.0
C1N C1P H1PA H1P 240.0 240.0
C1N C1P H1PA H1PB 120.0 120.0
H1P C1P H1PA H1PB 240.0 240.0
H1PB C1P C1N N1O 0.1 60.0
H1PB C1P C1N H1N 120.1 180.0
C1N C1P H1PB H1P 120.0 120.0
C1N C1P H1PB H1PA 240.0 240.0
H1P C1P H1PB H1PA 120.0 120.0
HN1O N1O C1N H1N 21.6 56.1
C1N N1O HN1O HN1C 120.0 123.9
HN1C N1O C1N H1N 141.6 180.0
C1N N1O HN1C HN1O 240.0 236.1