PDB Chemical Component SPM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SPM

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	C2	1.497	1.468
N1	HN11	1.019	1.009
N1	HN12	1.020	1.008
C2	C3	1.504	1.529
C2	H21	1.114	1.089
C2	H22	1.114	1.090
C3	C4	1.523	1.530
C3	H31	1.115	1.089
C3	H32	1.115	1.090
C4	N5	1.514	1.468
C4	H41	1.114	1.089
C4	H42	1.115	1.090
N5	C6	1.499	1.468
N5	HN5	1.021	1.008
C6	C7	1.510	1.530
C6	H61	1.114	1.090
C6	H62	1.115	1.090
C7	C8	1.543	1.528
C7	H71	1.116	1.089
C7	H72	1.115	1.090
C8	C9	1.513	1.529
C8	H81	1.114	1.089
C8	H82	1.115	1.090
C9	N10	1.487	1.468
C9	H91	1.115	1.089
C9	H92	1.116	1.090
N10	C11	1.513	1.469
N10	HN0	1.020	1.008
C11	C12	1.522	1.530
C11	H111	1.116	1.090
C11	H112	1.116	1.090
C12	C13	1.510	1.529
C12	H121	1.115	1.090
C12	H122	1.115	1.090
C13	N14	1.499	1.469
C13	H131	1.114	1.089
C13	H132	1.115	1.090
N14	HN41	1.019	1.008
N14	HN42	1.020	1.008

Bond Angles for SPM

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	HN11	113.5	106.7
C2	N1	HN12	110.7	106.8
N1	C2	C3	113.5	109.6
N1	C2	H21	110.8	109.5
N1	C2	H22	110.8	109.4
HN11	N1	HN12	110.8	106.6
C3	C2	H21	110.7	109.6
C3	C2	H22	110.7	109.5
C2	C3	C4	110.3	109.5
C2	C3	H31	111.9	109.5
C2	C3	H32	111.9	109.5
H21	C2	H22	99.6	109.4
C4	C3	H31	111.9	109.5
C4	C3	H32	111.9	109.4
C3	C4	N5	109.3	109.6
C3	C4	H41	112.3	109.5
C3	C4	H42	112.3	109.4
H31	C3	H32	98.5	109.4
N5	C4	H41	112.2	109.5
N5	C4	H42	112.2	109.4
C4	N5	C6	113.3	106.8
C4	N5	HN5	110.9	106.8
H41	C4	H42	98.2	109.4
C6	N5	HN5	110.8	106.7
N5	C6	C7	108.5	109.6
N5	C6	H61	112.5	109.5
N5	C6	H62	112.5	109.4
C7	C6	H61	112.6	109.5
C7	C6	H62	112.6	109.5
C6	C7	C8	110.1	109.5
C6	C7	H71	112.0	109.5
C6	C7	H72	111.9	109.4
H61	C6	H62	97.9	109.4
C8	C7	H71	112.0	109.5
C8	C7	H72	112.0	109.5
C7	C8	C9	109.2	109.5
C7	C8	H81	112.3	109.5
C7	C8	H82	112.3	109.5
H71	C7	H72	98.4	109.5
C9	C8	H81	112.3	109.5
C9	C8	H82	112.3	109.4
C8	C9	N10	113.1	109.5
C8	C9	H91	110.9	109.5
C8	C9	H92	110.9	109.4
H81	C8	H82	98.2	109.4
N10	C9	H91	110.9	109.5
N10	C9	H92	110.9	109.4
C9	N10	C11	110.8	106.7
C9	N10	HN0	111.7	106.7
H91	C9	H92	99.3	109.4
C11	N10	HN0	111.7	106.7
N10	C11	C12	111.8	109.5
N10	C11	H111	111.3	109.5
N10	C11	H112	111.4	109.4
C12	C11	H111	111.4	109.5
C12	C11	H112	111.4	109.4
C11	C12	C13	108.7	109.5
C11	C12	H121	112.5	109.4
C11	C12	H122	112.5	109.4
H111	C11	H112	99.0	109.5
C13	C12	H121	112.5	109.5
C13	C12	H122	112.5	109.5
C12	C13	N14	112.8	109.5
C12	C13	H131	111.0	109.5
C12	C13	H132	111.0	109.4
H121	C12	H122	98.0	109.4
N14	C13	H131	111.0	109.5
N14	C13	H132	111.0	109.4
C13	N14	HN41	112.8	106.8
C13	N14	HN42	111.0	106.8
H131	C13	H132	99.3	109.5
HN41	N14	HN42	111.1	106.7

Torsion Angles for SPM

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
HN11	N1	C2	HN12	125.3	113.7
C3	C2	N1	H21	234.8	239.8
C3	C2	N1	H22	125.2	120.0
N1	C2	C3	C4	184.7	180.0
N1	C2	C3	H31	310.0	300.1
N1	C2	C3	H32	59.4	60.0
H21	C2	N1	H22	250.4	240.2
C2	N1	HN11	HN12	234.8	246.1
HN11	N1	C2	C3	180.0	293.7
HN11	N1	C2	H21	305.2	53.9
HN11	N1	C2	H22	54.8	173.7
C2	N1	HN12	HN11	126.8	113.8
HN12	N1	C2	C3	54.7	180.0
HN12	N1	C2	H21	179.9	300.2
HN12	N1	C2	H22	289.5	60.0
C3	C2	N1	HN11	180.0	293.7
C3	C2	N1	HN12	54.7	180.0
N1	C2	C3	H21	125.2	120.1
N1	C2	C3	H22	234.7	240.0
H21	C2	C3	H22	109.5	119.9
C4	C3	C2	H31	234.7	239.9
C4	C3	C2	H32	125.3	119.9
C2	C3	C4	N5	187.4	180.0
C2	C3	C4	H41	312.7	300.1
C2	C3	C4	H42	62.2	60.0
H31	C3	C2	H32	250.5	240.0
H21	C2	N1	HN11	305.2	53.9
H21	C2	N1	HN12	179.9	300.2
N1	C2	H21	C3	233.2	239.8
N1	C2	H21	H22	116.7	119.9
C3	C2	H21	H22	243.4	240.0
H21	C2	C3	C4	59.5	59.9
H21	C2	C3	H31	184.7	180.0
H21	C2	C3	H32	294.2	299.9
H22	C2	N1	HN11	54.8	173.7
H22	C2	N1	HN12	289.5	60.0
N1	C2	H22	C3	126.8	120.1
N1	C2	H22	H21	243.3	240.1
C3	C2	H22	H21	116.6	120.0
H22	C2	C3	C4	310.0	299.9
H22	C2	C3	H31	75.2	60.0
H22	C2	C3	H32	184.7	180.0
C4	C3	C2	H21	59.5	59.9
C4	C3	C2	H22	310.0	299.9
C2	C3	C4	H31	125.3	120.1
C2	C3	C4	H32	234.7	240.0
H31	C3	C4	H32	109.4	119.9
N5	C4	C3	H41	234.8	239.9
N5	C4	C3	H42	125.2	119.9
C3	C4	N5	C6	180.9	180.0
C3	C4	N5	HN5	55.7	293.9
H41	C4	C3	H42	250.5	240.1
H31	C3	C2	H21	184.7	180.0
H31	C3	C2	H22	75.2	60.0
C2	C3	H31	C4	235.7	239.9
C2	C3	H31	H32	117.8	120.0
C4	C3	H31	H32	242.2	240.1
H31	C3	C4	N5	62.2	59.9
H31	C3	C4	H41	187.4	180.0
H31	C3	C4	H42	296.9	299.9
H32	C3	C2	H21	294.2	299.9
H32	C3	C2	H22	184.7	180.0
C2	C3	H32	C4	124.4	120.0
C2	C3	H32	H31	242.2	240.0
C4	C3	H32	H31	117.8	119.9
H32	C3	C4	N5	312.7	300.0
H32	C3	C4	H41	78.0	60.1
H32	C3	C4	H42	187.5	180.0
N5	C4	C3	H31	62.2	59.9
N5	C4	C3	H32	312.7	300.0
C3	C4	N5	H41	125.3	120.1
C3	C4	N5	H42	234.7	240.0
H41	C4	N5	H42	109.5	119.9
C6	N5	C4	HN5	125.3	246.1
C4	N5	C6	C7	175.6	180.0
C4	N5	C6	H61	300.9	300.1
C4	N5	C6	H62	50.3	60.0
H41	C4	C3	H31	187.4	180.0
H41	C4	C3	H32	78.0	60.1
C3	C4	H41	N5	236.4	239.8
C3	C4	H41	H42	118.2	120.0
N5	C4	H41	H42	241.9	240.1
H41	C4	N5	C6	55.7	59.9
H41	C4	N5	HN5	290.4	173.8
H42	C4	C3	H31	296.9	299.9
H42	C4	C3	H32	187.5	180.0
C3	C4	H42	N5	123.7	120.0
C3	C4	H42	H41	241.8	240.0
N5	C4	H42	H41	118.1	120.0
H42	C4	N5	C6	306.2	300.0
H42	C4	N5	HN5	180.9	53.9
C6	N5	C4	H41	55.7	59.9
C6	N5	C4	H42	306.2	300.0
C4	N5	C6	HN5	234.7	113.9
C7	C6	N5	H61	234.7	239.9
C7	C6	N5	H62	125.2	120.0
N5	C6	C7	C8	161.8	180.0
N5	C6	C7	H71	287.2	300.0
N5	C6	C7	H72	36.5	60.0
H61	C6	N5	H62	250.5	240.1
HN5	N5	C4	H41	290.4	173.8
HN5	N5	C4	H42	180.9	53.9
C4	N5	HN5	C6	126.7	246.1
HN5	N5	C6	C7	300.9	66.1
HN5	N5	C6	H61	66.2	186.2
HN5	N5	C6	H62	175.7	306.1
C7	C6	N5	HN5	300.9	66.1
N5	C6	C7	H61	125.2	120.1
N5	C6	C7	H62	234.8	240.0
H61	C6	C7	H62	109.5	120.0
C8	C7	C6	H71	234.7	240.0
C8	C7	C6	H72	125.3	120.0
C6	C7	C8	C9	171.5	180.0
C6	C7	C8	H81	296.8	300.1
C6	C7	C8	H82	46.3	60.0
H71	C7	C6	H72	250.6	240.0
H61	C6	N5	HN5	66.2	186.2
N5	C6	H61	C7	237.0	239.9
N5	C6	H61	H62	118.4	119.9
C7	C6	H61	H62	241.5	240.0
H61	C6	C7	C8	36.6	59.9
H61	C6	C7	H71	161.9	180.0
H61	C6	C7	H72	271.3	299.9
H62	C6	N5	HN5	175.7	306.1
N5	C6	H62	C7	123.0	120.1
N5	C6	H62	H61	241.5	240.0
C7	C6	H62	H61	118.5	120.0
H62	C6	C7	C8	287.1	300.0
H62	C6	C7	H71	52.4	60.0
H62	C6	C7	H72	161.7	180.0
C8	C7	C6	H61	36.6	59.9
C8	C7	C6	H62	287.1	300.0
C6	C7	C8	H71	125.3	120.0
C6	C7	C8	H72	234.7	240.0
H71	C7	C8	H72	109.4	120.0
C9	C8	C7	H81	234.8	239.9
C9	C8	C7	H82	125.3	119.9
C7	C8	C9	N10	168.0	180.0
C7	C8	C9	H91	293.4	300.1
C7	C8	C9	H92	42.7	60.0
H81	C8	C7	H82	250.5	240.0
H71	C7	C6	H61	161.9	180.0
H71	C7	C6	H62	52.4	60.0
C6	C7	H71	C8	235.7	240.0
C6	C7	H71	H72	117.8	119.9
C8	C7	H71	H72	242.1	240.0
H71	C7	C8	C9	46.2	59.9
H71	C7	C8	H81	171.5	180.1
H71	C7	C8	H82	281.0	300.0
H72	C7	C6	H61	271.3	299.9
H72	C7	C6	H62	161.7	180.0
C6	C7	H72	C8	124.3	120.0
C6	C7	H72	H71	242.2	240.0
C8	C7	H72	H71	117.9	120.0
H72	C7	C8	C9	296.8	299.9
H72	C7	C8	H81	62.0	60.0
H72	C7	C8	H82	171.6	180.0
C9	C8	C7	H71	46.2	59.9
C9	C8	C7	H72	296.8	299.9
C7	C8	C9	H81	125.2	120.1
C7	C8	C9	H82	234.8	240.0
H81	C8	C9	H82	109.6	119.9
N10	C9	C8	H91	234.7	239.9
N10	C9	C8	H92	125.3	119.9
C8	C9	N10	C11	271.6	180.0
C8	C9	N10	HN0	146.4	293.9
H91	C9	C8	H92	250.6	240.1
H81	C8	C7	H71	171.5	180.1
H81	C8	C7	H72	62.0	60.0
C7	C8	H81	C9	236.5	239.9
C7	C8	H81	H82	118.2	120.0
C9	C8	H81	H82	241.7	240.1
H81	C8	C9	N10	42.8	59.9
H81	C8	C9	H91	168.2	180.0
H81	C8	C9	H92	277.5	299.9
H82	C8	C7	H71	281.0	300.0
H82	C8	C7	H72	171.6	180.0
C7	C8	H82	C9	123.5	120.0
C7	C8	H82	H81	241.8	240.0
C9	C8	H82	H81	118.3	120.0
H82	C8	C9	N10	293.3	300.0
H82	C8	C9	H91	58.6	60.1
H82	C8	C9	H92	168.0	180.0
N10	C9	C8	H81	42.8	59.9
N10	C9	C8	H82	293.3	300.0
C8	C9	N10	H91	125.3	120.1
C8	C9	N10	H92	234.7	240.1
H91	C9	N10	H92	109.4	119.9
C11	N10	C9	HN0	125.2	246.1
C9	N10	C11	C12	175.0	180.0
C9	N10	C11	H111	300.3	300.1
C9	N10	C11	H112	49.7	60.1
H91	C9	C8	H81	168.2	180.0
H91	C9	C8	H82	58.6	60.1
C8	C9	H91	N10	233.5	239.9
C8	C9	H91	H92	116.7	119.9
N10	C9	H91	H92	243.2	240.1
H91	C9	N10	C11	146.3	59.9
H91	C9	N10	HN0	21.1	173.7
H92	C9	C8	H81	277.5	299.9
H92	C9	C8	H82	168.0	180.0
C8	C9	H92	N10	126.5	120.0
C8	C9	H92	H91	243.3	240.0
N10	C9	H92	H91	116.8	120.0
H92	C9	N10	C11	36.9	300.0
H92	C9	N10	HN0	271.7	53.8
C11	N10	C9	H91	146.3	59.9
C11	N10	C9	H92	36.9	300.0
C9	N10	C11	HN0	234.8	113.9
C12	C11	N10	H111	234.7	240.0
C12	C11	N10	H112	125.3	120.0
N10	C11	C12	C13	120.3	180.0
N10	C11	C12	H121	245.6	300.1
N10	C11	C12	H122	355.1	60.0
H111	C11	N10	H112	250.6	240.0
HN0	N10	C9	H91	21.1	173.7
HN0	N10	C9	H92	271.7	53.8
C9	N10	HN0	C11	124.7	246.1
HN0	N10	C11	C12	300.3	66.2
HN0	N10	C11	H111	65.6	186.2
HN0	N10	C11	H112	175.0	306.2
C12	C11	N10	HN0	300.3	66.2
N10	C11	C12	H111	125.2	120.0
N10	C11	C12	H112	234.7	240.0
H111	C11	C12	H112	109.5	120.0
C13	C12	C11	H121	234.8	239.9
C13	C12	C11	H122	125.3	120.0
C11	C12	C13	N14	111.6	179.9
C11	C12	C13	H131	236.9	300.0
C11	C12	C13	H132	346.3	60.0
H121	C12	C11	H122	250.5	240.1
H111	C11	N10	HN0	65.6	186.2
N10	C11	H111	C12	234.5	239.9
N10	C11	H111	H112	117.2	120.0
C12	C11	H111	H112	242.7	240.0
H111	C11	C12	C13	355.1	60.0
H111	C11	C12	H121	120.3	180.1
H111	C11	C12	H122	229.8	299.9
H112	C11	N10	HN0	175.0	306.2
N10	C11	H112	C12	125.5	120.0
N10	C11	H112	H111	242.8	240.0
C12	C11	H112	H111	117.3	120.0
H112	C11	C12	C13	245.6	299.9
H112	C11	C12	H121	10.8	60.1
H112	C11	C12	H122	120.4	179.9
C13	C12	C11	H111	355.1	60.0
C13	C12	C11	H112	245.6	299.9
C11	C12	C13	H121	125.2	120.1
C11	C12	C13	H122	234.8	240.0
H121	C12	C13	H122	109.5	120.0
N14	C13	C12	H131	234.7	239.9
N14	C13	C12	H132	125.3	119.9
C12	C13	N14	HN41	180.0	180.0
C12	C13	N14	HN42	54.7	293.9
H131	C13	C12	H132	250.6	240.0
H121	C12	C11	H111	120.3	180.1
H121	C12	C11	H112	10.8	60.1
C11	C12	H121	C13	236.8	239.9
C11	C12	H121	H122	118.4	119.9
C13	C12	H121	H122	241.6	240.0
H121	C12	C13	N14	346.4	59.9
H121	C12	C13	H131	111.7	180.0
H121	C12	C13	H132	221.1	300.0
H122	C12	C11	H111	229.8	299.9
H122	C12	C11	H112	120.4	179.9
C11	C12	H122	C13	123.2	120.0
C11	C12	H122	H121	241.6	240.1
C13	C12	H122	H121	118.4	120.0
H122	C12	C13	N14	236.8	299.9
H122	C12	C13	H131	2.1	60.0
H122	C12	C13	H132	111.6	180.0
N14	C13	C12	H121	346.4	59.9
N14	C13	C12	H122	236.8	299.9
C12	C13	N14	H131	125.3	120.1
C12	C13	N14	H132	234.8	240.1
H131	C13	N14	H132	109.5	120.0
HN41	N14	C13	HN42	125.3	246.1
H131	C13	C12	H121	111.7	180.0
H131	C13	C12	H122	2.1	60.0
C12	C13	H131	N14	233.7	239.9
C12	C13	H131	H132	116.8	120.0
N14	C13	H131	H132	243.1	240.1
H131	C13	N14	HN41	54.8	59.9
H131	C13	N14	HN42	289.4	173.7
H132	C13	C12	H121	221.1	300.0
H132	C13	C12	H122	111.6	180.0
C12	C13	H132	N14	126.3	120.0
C12	C13	H132	H131	243.2	240.0
N14	C13	H132	H131	116.9	120.0
H132	C13	N14	HN41	305.3	299.9
H132	C13	N14	HN42	180.0	53.8
HN41	N14	C13	H131	54.8	59.9
HN41	N14	C13	H132	305.3	299.9
C13	N14	HN41	HN42	234.7	113.9
HN42	N14	C13	H131	289.4	173.7
HN42	N14	C13	H132	180.0	53.8
C13	N14	HN42	HN41	126.3	246.1