PDB Chemical Component SP3

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SP3

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C30	C31	1.391	1.381
C30	C29	1.395	1.389
C30	H30	1.080	1.080
C31	C32	1.390	1.384
C31	H31	1.079	1.080
C32	F35	1.346	1.351
C32	C33	1.393	1.385
C33	C34	1.389	1.381
C33	H33	1.080	1.081
C34	C29	1.395	1.388
C34	H34	1.080	1.080
C29	N8	1.338	1.401
N8	N7	1.234	1.400
N8	C9	1.330	1.362
N7	C6	1.336	1.319
C6	C3	1.403	1.479
C6	C10	1.335	1.410
C3	C2	1.337	1.369
C3	S4	1.739	1.786
C2	C1	1.333	1.378
C2	H2	1.080	1.080
C1	C5	1.337	1.358
C1	H1	1.080	1.080
C5	S4	1.706	1.785
C5	H5	1.080	1.080
C10	C9	1.329	1.359
C10	H10	1.080	1.080
C9	N11	1.330	1.391
N11	S12	1.624	1.656
N11	H11	1.000	0.970
S12	O13	1.497	1.421
S12	O14	1.506	1.421
S12	C15	1.780	1.762
C15	C16	1.395	1.382
C15	C20	1.396	1.382
C16	C17	1.394	1.382
C16	H16	1.080	1.080
C20	C19	1.390	1.382
C20	H20	1.080	1.080
C19	C25	1.547	1.507
C19	C18	1.393	1.382
C25	F28	1.337	1.399
C25	F26	1.342	1.399
C25	F27	1.322	1.399
C18	C17	1.391	1.383
C18	H18	1.080	1.081
C17	C21	1.542	1.507
C21	F24	1.340	1.399
C21	F22	1.332	1.399
C21	F23	1.327	1.399

Bond Angles for SP3

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C31	C30	C29	121.2	120.0
C31	C30	H30	119.4	120.0
C30	C31	C32	118.6	120.0
C30	C31	H31	120.7	120.0
C29	C30	H30	119.4	120.0
C30	C29	C34	119.4	119.9
C30	C29	N8	120.1	120.1
C32	C31	H31	120.7	120.0
C31	C32	F35	119.8	120.0
C31	C32	C33	120.9	120.1
F35	C32	C33	119.2	119.9
C32	C33	C34	119.9	120.0
C32	C33	H33	120.0	120.0
C34	C33	H33	120.1	119.9
C33	C34	C29	119.9	120.0
C33	C34	H34	120.1	120.0
C29	C34	H34	120.0	120.0
C34	C29	N8	120.5	120.1
C29	N8	N7	126.4	125.9
C29	N8	C9	125.2	126.0
N7	N8	C9	108.3	108.0
N8	N7	C6	110.4	108.3
N8	C9	C10	108.9	107.7
N8	C9	N11	123.1	126.1
N7	C6	C3	127.5	126.0
N7	C6	C10	107.2	108.1
C3	C6	C10	125.3	125.9
C6	C3	C2	126.7	129.0
C6	C3	S4	125.3	129.1
C6	C10	C9	105.3	107.8
C6	C10	H10	127.4	126.1
C2	C3	S4	108.0	101.9
C3	C2	C1	114.8	118.7
C3	C2	H2	122.6	120.6
C3	S4	C5	92.5	98.1
C1	C2	H2	122.6	120.7
C2	C1	C5	116.4	119.1
C2	C1	H1	121.8	120.5
C5	C1	H1	121.8	120.4
C1	C5	S4	108.2	102.1
C1	C5	H5	125.9	128.9
S4	C5	H5	125.9	129.0
C9	C10	H10	127.4	126.1
C10	C9	N11	128.0	126.2
C9	N11	S12	127.4	120.0
C9	N11	H11	103.9	120.0
S12	N11	H11	103.9	119.9
N11	S12	O13	108.3	105.7
N11	S12	O14	107.3	105.8
N11	S12	C15	109.6	107.4
O13	S12	O14	109.8	125.4
O13	S12	C15	111.6	105.8
O14	S12	C15	110.1	105.8
S12	C15	C16	121.5	120.0
S12	C15	C20	119.6	120.0
C16	C15	C20	118.8	120.0
C15	C16	C17	120.2	120.0
C15	C16	H16	119.9	120.0
C15	C20	C19	122.0	120.0
C15	C20	H20	119.0	120.0
C17	C16	H16	119.9	120.0
C16	C17	C18	119.6	120.0
C16	C17	C21	121.4	120.0
C19	C20	H20	119.0	120.0
C20	C19	C25	120.3	120.0
C20	C19	C18	118.0	120.0
C25	C19	C18	121.6	120.0
C19	C25	F28	112.7	109.4
C19	C25	F26	111.9	109.5
C19	C25	F27	109.8	109.5
C19	C18	C17	121.3	120.0
C19	C18	H18	119.3	120.0
F28	C25	F26	115.0	109.4
F28	C25	F27	103.1	109.5
F26	C25	F27	103.5	109.5
C17	C18	H18	119.3	120.0
C18	C17	C21	118.9	120.0
C17	C21	F24	112.1	109.5
C17	C21	F22	109.4	109.5
C17	C21	F23	111.1	109.5
F24	C21	F22	114.4	109.4
F24	C21	F23	106.0	109.5
F22	C21	F23	103.5	109.5

Torsion Angles for SP3

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C29	C30	C31	H30	180.0	180.2
C31	C30	C29	C34	0.7	359.8
C31	C30	C29	N8	181.2	179.8
C32	C31	C30	H31	180.0	180.4
C30	C31	C32	F35	179.1	179.8
C30	C31	C32	C33	2.2	359.6
C31	C30	C29	H30	180.0	179.8
C29	C30	C31	C32	358.3	0.4
C29	C30	C31	H31	178.3	180.0
C33	C34	C29	C30	359.7	0.0
C30	C29	C34	H34	179.7	180.0
C34	C29	C30	N8	179.5	180.0
C30	C29	N8	N7	333.1	140.0
C30	C29	N8	C9	150.0	319.7
C31	C30	H30	C29	180.0	180.2
H30	C30	C31	C32	178.3	180.2
H30	C30	C31	H31	358.3	359.8
H30	C30	C29	C34	180.7	180.0
H30	C30	C29	N8	1.3	359.9
C32	C31	C30	C29	358.3	0.4
C32	C31	C30	H30	178.3	180.2
C30	C31	C32	H31	180.0	179.6
F35	C32	C31	C33	176.9	180.2
C31	C32	C33	C34	358.2	0.2
C31	C32	C33	H33	178.2	180.2
H31	C31	C30	C29	178.3	180.0
H31	C31	C30	H30	358.3	359.8
C30	C31	H31	C32	180.0	180.4
H31	C31	C32	F35	359.1	0.2
H31	C31	C32	C33	182.2	180.0
F35	C32	C31	H31	359.1	0.2
C31	C32	F35	C33	183.1	179.8
F35	C32	C33	C34	181.3	180.0
F35	C32	C33	H33	1.3	360.0
C33	C32	C31	H31	182.2	180.0
C31	C32	C33	F35	176.9	180.2
C34	C33	C32	H33	180.0	180.0
C32	C33	C34	C29	0.8	0.0
C32	C33	C34	H34	180.8	180.0
C30	C29	C34	C33	359.7	0.0
C32	C33	C34	H33	180.0	180.0
C29	C34	C33	H34	180.0	180.0
C33	C34	C29	N8	179.2	180.0
C32	C33	H33	C34	180.0	180.0
H33	C33	C34	C29	180.8	180.0
H33	C33	C34	H34	0.8	0.0
C34	C29	C30	H30	180.7	180.0
C30	C29	C34	N8	180.5	180.0
C29	C34	C33	H33	180.8	180.0
C33	C34	C29	H34	180.0	180.0
C34	C29	N8	N7	153.6	320.0
C34	C29	N8	C9	330.6	139.7
H34	C34	C33	H33	0.8	0.0
C33	C34	H34	C29	180.0	180.0
H34	C34	C29	N8	359.2	0.0
N8	C29	C30	H30	1.3	359.9
C30	C29	N8	C34	179.5	180.0
N8	C29	C34	H34	359.2	0.0
N7	N8	C29	C9	183.1	180.3
C29	N8	N7	C6	178.2	180.0
C29	N8	C9	C10	181.7	179.8
C29	N8	C9	N11	2.2	0.2
C29	N8	N7	C9	177.4	179.8
N7	N8	C9	C10	359.1	359.6
N7	N8	C9	N11	179.6	180.0
N8	N7	C6	C3	181.9	180.0
N8	N7	C6	C10	359.5	360.0
C29	N8	C9	N7	182.6	180.2
C9	N8	N7	C6	0.8	0.3
C6	C10	C9	N8	0.5	0.4
N8	C9	C10	H10	180.5	180.1
C10	C9	N8	N11	179.6	179.6
N8	C9	N11	S12	177.9	184.1
N8	C9	N11	H11	297.9	4.1
C6	N7	N8	C9	0.8	0.3
C3	C6	N7	C10	182.4	180.0
N7	C6	C3	C2	183.6	359.7
N7	C6	C3	S4	5.3	180.0
N7	C6	C10	C9	359.9	359.8
N7	C6	C10	H10	180.0	180.0
N7	C6	C3	C10	177.2	180.0
C3	C6	C10	C9	177.6	179.7
C3	C6	C10	H10	357.6	360.0
C2	C3	C6	S4	178.4	179.6
C6	C3	C2	C1	179.4	179.8
C6	C3	C2	H2	359.4	0.3
C6	C3	S4	C5	179.3	180.0
N8	C9	C10	C6	0.5	0.4
N7	C6	C10	C3	182.3	180.0
C10	C6	C3	C2	6.4	179.7
C10	C6	C3	S4	188.0	0.1
C9	C10	C6	H10	180.0	179.8
C6	C10	C9	N11	180.1	180.0
C2	C3	C6	C10	6.4	179.7
C6	C3	C2	S4	181.4	180.3
C2	C3	S4	C5	0.7	0.3
C1	C2	C3	H2	180.0	179.5
C3	C2	C1	C5	2.8	0.5
C3	C2	C1	H1	182.8	180.3
S4	C3	C6	C10	188.0	0.1
C6	C3	S4	C2	178.6	179.7
S4	C3	C2	C1	358.0	359.5
S4	C3	C2	H2	178.0	180.0
C1	C5	S4	C3	0.8	360.0
C3	S4	C5	H5	180.8	180.0
C1	C2	C3	S4	358.0	359.5
C3	C2	C1	H2	180.0	180.5
C5	C1	C2	H1	180.0	180.2
C2	C1	C5	S4	357.9	359.7
C2	C1	C5	H5	177.9	179.7
H2	C2	C3	S4	178.0	180.0
C3	C2	H2	C1	180.0	179.5
H2	C2	C1	C5	182.8	180.0
H2	C2	C1	H1	2.8	359.8
C3	S4	C5	C1	0.8	360.0
C5	C1	C2	H2	182.8	180.0
C2	C1	C5	H1	180.0	179.8
S4	C5	C1	H5	180.0	180.0
H1	C1	C2	H2	2.8	359.8
C2	C1	H1	C5	180.0	180.2
H1	C1	C5	S4	177.9	180.0
H1	C1	C5	H5	357.9	360.0
S4	C5	C1	H1	177.9	180.0
C1	C5	S4	H5	180.0	180.0
H5	C5	C1	H1	357.9	360.0
C1	C5	H5	S4	180.0	180.0
N8	C9	C10	N11	180.4	180.4
C6	C10	C9	H10	180.0	180.2
C10	C9	N11	S12	358.4	4.5
C10	C9	N11	H11	118.4	184.6
C6	C10	H10	C9	180.0	179.7
H10	C10	C9	N11	0.1	359.8
N8	C9	N11	C10	179.5	179.5
N11	C9	C10	H10	0.1	359.8
S12	N11	C9	H11	240.0	179.9
C9	N11	S12	O13	44.2	311.2
C9	N11	S12	O14	162.6	176.4
C9	N11	S12	C15	282.1	63.8
C9	N11	S12	H11	120.0	180.1
O13	S12	N11	O14	241.5	134.8
O13	S12	N11	C15	122.0	247.4
O14	S12	N11	C15	240.5	112.6
N11	S12	C15	C16	276.0	84.4
N11	S12	C15	C20	93.1	264.1
C9	N11	H11	S12	225.1	179.9
H11	N11	S12	O13	284.1	131.1
H11	N11	S12	O14	42.6	356.4
H11	N11	S12	C15	162.1	243.7
O13	S12	N11	H11	284.1	131.1
N11	S12	O13	O14	116.9	236.9
N11	S12	O13	C15	239.2	113.7
O14	S12	O13	C15	122.3	236.8
O13	S12	C15	C16	156.0	196.9
O13	S12	C15	C20	333.0	16.7
O14	S12	N11	H11	42.6	356.4
N11	S12	O14	O13	242.5	123.1
N11	S12	O14	C15	119.2	246.3
O13	S12	O14	C15	236.8	123.2
O14	S12	C15	C16	33.8	331.8
O14	S12	C15	C20	210.9	151.5
C15	S12	N11	H11	162.1	243.7
N11	S12	C15	O13	120.0	247.4
N11	S12	C15	O14	242.2	112.6
O13	S12	C15	O14	122.1	225.2
C16	C15	S12	C20	182.9	180.3
S12	C15	C16	C17	178.1	180.0
S12	C15	C16	H16	358.2	360.0
S12	C15	C20	C19	182.1	179.8
S12	C15	C20	H20	2.0	0.2
S12	C15	C16	C20	177.1	179.7
C16	C15	C20	C19	359.2	359.5
C16	C15	C20	H20	179.2	180.0
C17	C16	C15	H16	180.0	180.0
C15	C16	C17	C18	359.6	0.0
C15	C16	C17	C21	178.7	180.0
S12	C15	C20	C16	182.9	180.3
C20	C15	C16	C17	1.0	0.2
C20	C15	C16	H16	181.1	180.2
C19	C20	C15	H20	180.0	179.5
C15	C20	C19	C25	183.0	180.3
C15	C20	C19	C18	359.9	0.5
C17	C16	C15	C20	1.0	0.2
C15	C16	C17	H16	180.0	180.0
C19	C18	C17	C16	359.4	360.0
C16	C17	C18	H18	179.4	179.9
C18	C17	C16	C21	180.9	180.0
C16	C17	C21	F24	298.2	90.0
C16	C17	C21	F22	66.2	210.0
C16	C17	C21	F23	179.8	330.0
H16	C16	C15	C20	181.1	180.2
C15	C16	H16	C17	180.0	180.0
H16	C16	C17	C18	179.6	180.0
H16	C16	C17	C21	358.6	360.0
C15	C20	C19	H20	180.0	180.5
C25	C19	C20	C18	183.2	179.8
C20	C19	C25	F28	186.5	180.2
C20	C19	C25	F26	318.0	300.2
C20	C19	C25	F27	72.3	60.2
C20	C19	C18	C17	0.8	359.8
C20	C19	C18	H18	180.8	179.8
C15	C20	H20	C19	180.0	179.5
H20	C20	C19	C25	3.1	359.8
H20	C20	C19	C18	179.9	180.0
C25	C19	C20	H20	3.1	359.8
C20	C19	C25	C18	176.7	180.2
C25	C19	C18	C17	177.6	180.0
C25	C19	C18	H18	357.6	0.1
F28	C25	C19	F26	228.6	240.1
F28	C25	C19	F27	114.2	120.0
F26	C25	C19	F27	245.7	240.0
C16	C17	C18	C19	359.4	360.0
C18	C19	C20	H20	179.9	180.0
C20	C19	C18	C25	183.2	179.8
C18	C19	C25	F28	9.8	0.0
C18	C19	C25	F26	141.3	119.9
C18	C19	C25	F27	255.6	240.0
C17	C18	C19	H18	180.0	179.9
C19	C18	C17	C21	180.4	180.0
F28	C25	C19	C18	9.8	0.0
C19	C25	F28	F26	129.8	120.0
C19	C25	F28	F27	241.8	240.0
F26	C25	F28	F27	111.9	120.0
F26	C25	C19	C18	141.3	119.9
C19	C25	F26	F28	229.8	240.1
C19	C25	F26	F27	118.1	120.0
F28	C25	F26	F27	248.3	240.0
F27	C25	C19	C18	255.6	240.0
C19	C25	F27	F28	120.3	120.0
C19	C25	F27	F26	240.4	240.0
F28	C25	F27	F26	120.2	120.0
C18	C17	C16	H16	179.6	180.0
C16	C17	C18	C21	179.1	180.0
C19	C18	C17	H18	180.0	180.1
C18	C17	C21	F24	117.2	270.0
C18	C17	C21	F22	245.3	30.0
C18	C17	C21	F23	358.9	150.0
C19	C18	H18	C17	180.0	179.9
H18	C18	C17	C21	0.3	360.0
C21	C17	C16	H16	358.6	360.0
C16	C17	C21	C18	180.9	180.0
C21	C17	C18	H18	0.3	360.0
F24	C21	C17	F22	231.9	240.0
F24	C21	C17	F23	118.3	120.0
F22	C21	C17	F23	246.4	240.0
C17	C21	F24	F22	125.4	120.0
C17	C21	F24	F23	238.7	240.0
F22	C21	F24	F23	113.3	120.0
C17	C21	F22	F24	233.2	240.0
C17	C21	F22	F23	118.5	120.0
F24	C21	F22	F23	245.2	240.0
C17	C21	F23	F24	122.0	120.0
C17	C21	F23	F22	242.7	240.0
F24	C21	F23	F22	120.7	120.0