PDB Chemical Component SP0
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SP0
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C22 |
C23 |
1.386 |
1.385 |
C22 |
C21 |
1.387 |
1.382 |
C22 |
H22 |
1.079 |
1.081 |
C23 |
F40 |
1.349 |
1.351 |
C23 |
C24 |
1.392 |
1.384 |
C24 |
C25 |
1.393 |
1.383 |
C24 |
H24 |
1.080 |
1.080 |
C25 |
C26 |
1.389 |
1.382 |
C25 |
H25 |
1.080 |
1.080 |
C26 |
C21 |
1.391 |
1.382 |
C26 |
H26 |
1.080 |
1.080 |
C21 |
S18 |
1.737 |
1.762 |
S18 |
O19 |
1.504 |
1.420 |
S18 |
O20 |
1.503 |
1.422 |
S18 |
N17 |
1.633 |
1.656 |
N17 |
C9 |
1.333 |
1.391 |
N17 |
H17 |
1.000 |
0.970 |
C9 |
C10 |
1.331 |
1.359 |
C9 |
N8 |
1.331 |
1.362 |
C10 |
C6 |
1.330 |
1.410 |
C10 |
H10 |
1.080 |
1.080 |
C6 |
C4 |
1.391 |
1.479 |
C6 |
N7 |
1.333 |
1.318 |
C4 |
C5 |
1.329 |
1.368 |
C4 |
S3 |
1.702 |
1.786 |
C5 |
C1 |
1.331 |
1.378 |
C5 |
H5 |
1.080 |
1.081 |
C1 |
C2 |
1.328 |
1.358 |
C1 |
H1 |
1.080 |
1.080 |
C2 |
S3 |
1.704 |
1.786 |
C2 |
H2 |
1.080 |
1.080 |
N7 |
N8 |
1.232 |
1.400 |
N8 |
C11 |
1.336 |
1.401 |
C11 |
C12 |
1.394 |
1.389 |
C11 |
C16 |
1.389 |
1.389 |
C12 |
C13 |
1.386 |
1.381 |
C12 |
H12 |
1.080 |
1.080 |
C13 |
C14 |
1.389 |
1.385 |
C13 |
H13 |
1.080 |
1.080 |
C14 |
F27 |
1.345 |
1.351 |
C14 |
C15 |
1.387 |
1.385 |
C15 |
C16 |
1.387 |
1.380 |
C15 |
H15 |
1.080 |
1.080 |
C16 |
H16 |
1.080 |
1.080 |
Bond Angles for SP0
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C23 |
C22 |
C21 |
117.6 |
120.0 |
C23 |
C22 |
H22 |
121.2 |
120.0 |
C22 |
C23 |
F40 |
117.0 |
120.0 |
C22 |
C23 |
C24 |
120.4 |
119.9 |
C21 |
C22 |
H22 |
121.2 |
120.0 |
C22 |
C21 |
C26 |
122.8 |
120.0 |
C22 |
C21 |
S18 |
117.0 |
120.0 |
F40 |
C23 |
C24 |
122.6 |
120.1 |
C23 |
C24 |
C25 |
121.4 |
120.0 |
C23 |
C24 |
H24 |
119.3 |
120.1 |
C25 |
C24 |
H24 |
119.3 |
120.0 |
C24 |
C25 |
C26 |
118.5 |
120.0 |
C24 |
C25 |
H25 |
120.7 |
120.0 |
C26 |
C25 |
H25 |
120.7 |
120.0 |
C25 |
C26 |
C21 |
119.2 |
120.1 |
C25 |
C26 |
H26 |
120.4 |
120.0 |
C21 |
C26 |
H26 |
120.4 |
119.9 |
C26 |
C21 |
S18 |
120.2 |
120.0 |
C21 |
S18 |
O19 |
107.4 |
105.8 |
C21 |
S18 |
O20 |
108.2 |
105.7 |
C21 |
S18 |
N17 |
110.0 |
107.4 |
O19 |
S18 |
O20 |
114.0 |
125.4 |
O19 |
S18 |
N17 |
113.0 |
105.8 |
O20 |
S18 |
N17 |
104.1 |
105.8 |
S18 |
N17 |
C9 |
125.2 |
120.0 |
S18 |
N17 |
H17 |
104.5 |
120.0 |
C9 |
N17 |
H17 |
104.6 |
120.0 |
N17 |
C9 |
C10 |
126.3 |
126.2 |
N17 |
C9 |
N8 |
124.9 |
126.2 |
C10 |
C9 |
N8 |
108.8 |
107.7 |
C9 |
C10 |
C6 |
105.0 |
107.8 |
C9 |
C10 |
H10 |
127.5 |
126.1 |
C9 |
N8 |
N7 |
108.3 |
108.0 |
C9 |
N8 |
C11 |
126.4 |
126.0 |
C6 |
C10 |
H10 |
127.5 |
126.1 |
C10 |
C6 |
C4 |
126.4 |
125.9 |
C10 |
C6 |
N7 |
107.6 |
108.1 |
C4 |
C6 |
N7 |
126.0 |
125.9 |
C6 |
C4 |
C5 |
131.4 |
129.1 |
C6 |
C4 |
S3 |
123.8 |
129.0 |
C6 |
N7 |
N8 |
110.3 |
108.3 |
C5 |
C4 |
S3 |
104.8 |
101.9 |
C4 |
C5 |
C1 |
117.3 |
118.8 |
C4 |
C5 |
H5 |
121.4 |
120.6 |
C4 |
S3 |
C2 |
96.1 |
98.1 |
C1 |
C5 |
H5 |
121.3 |
120.6 |
C5 |
C1 |
C2 |
116.5 |
119.1 |
C5 |
C1 |
H1 |
121.8 |
120.5 |
C2 |
C1 |
H1 |
121.8 |
120.4 |
C1 |
C2 |
S3 |
105.3 |
102.1 |
C1 |
C2 |
H2 |
127.4 |
129.0 |
S3 |
C2 |
H2 |
127.4 |
129.0 |
N7 |
N8 |
C11 |
125.1 |
126.0 |
N8 |
C11 |
C12 |
119.4 |
120.0 |
N8 |
C11 |
C16 |
120.9 |
120.1 |
C12 |
C11 |
C16 |
119.7 |
119.9 |
C11 |
C12 |
C13 |
121.0 |
120.0 |
C11 |
C12 |
H12 |
119.5 |
120.0 |
C11 |
C16 |
C15 |
119.9 |
120.0 |
C11 |
C16 |
H16 |
120.0 |
120.0 |
C13 |
C12 |
H12 |
119.5 |
120.0 |
C12 |
C13 |
C14 |
118.3 |
120.0 |
C12 |
C13 |
H13 |
120.8 |
120.0 |
C14 |
C13 |
H13 |
120.8 |
120.0 |
C13 |
C14 |
F27 |
120.8 |
119.9 |
C13 |
C14 |
C15 |
121.5 |
120.1 |
F27 |
C14 |
C15 |
117.7 |
120.0 |
C14 |
C15 |
C16 |
119.5 |
120.1 |
C14 |
C15 |
H15 |
120.2 |
120.0 |
C16 |
C15 |
H15 |
120.2 |
120.0 |
C15 |
C16 |
H16 |
120.1 |
120.0 |
Torsion Angles for SP0
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C21 |
C22 |
C23 |
H22 |
180.0 |
180.6 |
C23 |
C22 |
C21 |
C26 |
359.6 |
359.4 |
C23 |
C22 |
C21 |
S18 |
178.5 |
179.7 |
F40 |
C23 |
C22 |
C24 |
179.3 |
179.7 |
C22 |
C23 |
C24 |
C25 |
0.1 |
359.8 |
C22 |
C23 |
C24 |
H24 |
180.1 |
179.7 |
C23 |
C22 |
C21 |
H22 |
180.0 |
179.4 |
C21 |
C22 |
C23 |
F40 |
179.4 |
180.3 |
C21 |
C22 |
C23 |
C24 |
0.0 |
0.5 |
C25 |
C26 |
C21 |
C22 |
0.7 |
0.3 |
C22 |
C21 |
C26 |
H26 |
180.7 |
180.2 |
C26 |
C21 |
C22 |
S18 |
181.1 |
179.7 |
C22 |
C21 |
S18 |
O19 |
155.1 |
16.4 |
C22 |
C21 |
S18 |
O20 |
31.6 |
151.2 |
C22 |
C21 |
S18 |
N17 |
278.4 |
263.8 |
C23 |
C22 |
H22 |
C21 |
180.0 |
180.6 |
H22 |
C22 |
C23 |
F40 |
359.4 |
359.7 |
H22 |
C22 |
C23 |
C24 |
180.0 |
180.0 |
H22 |
C22 |
C21 |
C26 |
179.6 |
180.0 |
H22 |
C22 |
C21 |
S18 |
358.5 |
0.3 |
F40 |
C23 |
C22 |
C21 |
179.4 |
180.3 |
F40 |
C23 |
C22 |
H22 |
359.4 |
359.7 |
C22 |
C23 |
F40 |
C24 |
180.7 |
180.3 |
F40 |
C23 |
C24 |
C25 |
180.8 |
180.0 |
F40 |
C23 |
C24 |
H24 |
0.8 |
0.0 |
C24 |
C23 |
C22 |
C21 |
0.0 |
0.5 |
C24 |
C23 |
C22 |
H22 |
180.0 |
180.0 |
C22 |
C23 |
C24 |
F40 |
179.3 |
179.7 |
C25 |
C24 |
C23 |
H24 |
180.0 |
180.0 |
C23 |
C24 |
C25 |
C26 |
0.2 |
360.0 |
C23 |
C24 |
C25 |
H25 |
180.1 |
180.0 |
C23 |
C24 |
C25 |
H24 |
180.0 |
180.0 |
C26 |
C25 |
C24 |
H25 |
180.0 |
179.9 |
C24 |
C25 |
C26 |
C21 |
359.5 |
0.0 |
C24 |
C25 |
C26 |
H26 |
179.4 |
180.1 |
C23 |
C24 |
H24 |
C25 |
180.0 |
180.0 |
H24 |
C24 |
C25 |
C26 |
180.2 |
180.0 |
H24 |
C24 |
C25 |
H25 |
0.1 |
0.0 |
C22 |
C21 |
C26 |
C25 |
0.7 |
0.3 |
C26 |
C25 |
C24 |
H24 |
180.2 |
180.0 |
C24 |
C25 |
C26 |
H25 |
180.0 |
180.1 |
C21 |
C26 |
C25 |
H26 |
180.0 |
180.0 |
C25 |
C26 |
C21 |
S18 |
181.8 |
180.0 |
H25 |
C25 |
C24 |
H24 |
0.1 |
0.0 |
C24 |
C25 |
H25 |
C26 |
180.0 |
179.9 |
H25 |
C25 |
C26 |
C21 |
179.5 |
180.0 |
H25 |
C25 |
C26 |
H26 |
359.5 |
360.0 |
C26 |
C21 |
C22 |
H22 |
179.6 |
180.0 |
C22 |
C21 |
C26 |
S18 |
178.9 |
180.3 |
C21 |
C26 |
C25 |
H25 |
179.5 |
180.0 |
C25 |
C26 |
C21 |
H26 |
180.0 |
180.0 |
C26 |
C21 |
S18 |
O19 |
334.0 |
196.7 |
C26 |
C21 |
S18 |
O20 |
210.5 |
331.5 |
C26 |
C21 |
S18 |
N17 |
97.4 |
84.1 |
H26 |
C26 |
C25 |
H25 |
359.5 |
360.0 |
C25 |
C26 |
H26 |
C21 |
180.0 |
180.0 |
H26 |
C26 |
C21 |
S18 |
1.8 |
359.9 |
S18 |
C21 |
C22 |
H22 |
358.5 |
0.3 |
C22 |
C21 |
S18 |
C26 |
181.1 |
179.7 |
S18 |
C21 |
C26 |
H26 |
1.8 |
359.9 |
O19 |
S18 |
C21 |
O20 |
123.5 |
225.2 |
O19 |
S18 |
C21 |
N17 |
236.7 |
112.6 |
O20 |
S18 |
C21 |
N17 |
113.1 |
247.4 |
C21 |
S18 |
N17 |
C9 |
285.8 |
63.6 |
C21 |
S18 |
N17 |
H17 |
45.8 |
243.6 |
C21 |
S18 |
O19 |
O20 |
240.1 |
123.1 |
C21 |
S18 |
O19 |
N17 |
121.5 |
246.3 |
O20 |
S18 |
O19 |
N17 |
241.4 |
123.1 |
O19 |
S18 |
N17 |
C9 |
45.8 |
311.0 |
O19 |
S18 |
N17 |
H17 |
165.8 |
131.0 |
C21 |
S18 |
O20 |
O19 |
119.5 |
236.9 |
C21 |
S18 |
O20 |
N17 |
243.0 |
113.7 |
O19 |
S18 |
O20 |
N17 |
123.5 |
236.8 |
O20 |
S18 |
N17 |
C9 |
170.0 |
176.2 |
O20 |
S18 |
N17 |
H17 |
290.0 |
356.2 |
C21 |
S18 |
N17 |
O19 |
240.0 |
112.6 |
C21 |
S18 |
N17 |
O20 |
115.8 |
247.4 |
O19 |
S18 |
N17 |
O20 |
235.8 |
134.8 |
C9 |
N17 |
S18 |
H17 |
240.0 |
180.0 |
S18 |
N17 |
C9 |
C10 |
351.8 |
4.4 |
S18 |
N17 |
C9 |
N8 |
171.6 |
183.9 |
S18 |
N17 |
C9 |
H17 |
120.0 |
180.0 |
C10 |
C9 |
N17 |
N8 |
180.2 |
180.5 |
N17 |
C9 |
C10 |
C6 |
180.2 |
180.0 |
N17 |
C9 |
C10 |
H10 |
0.2 |
359.8 |
N17 |
C9 |
N8 |
N7 |
178.8 |
180.0 |
N17 |
C9 |
N8 |
C11 |
3.2 |
0.2 |
S18 |
N17 |
H17 |
C9 |
227.0 |
180.0 |
H17 |
N17 |
C9 |
C10 |
231.8 |
184.4 |
H17 |
N17 |
C9 |
N8 |
51.6 |
3.9 |
C10 |
C9 |
N17 |
H17 |
231.8 |
184.4 |
N17 |
C9 |
C10 |
N8 |
179.8 |
179.6 |
C10 |
C9 |
N8 |
N7 |
358.6 |
359.6 |
C10 |
C9 |
N8 |
C11 |
183.1 |
179.8 |
C6 |
C10 |
C9 |
H10 |
180.0 |
180.2 |
C9 |
C10 |
C6 |
C4 |
179.4 |
179.7 |
C9 |
C10 |
C6 |
N7 |
0.6 |
359.8 |
N8 |
C9 |
N17 |
H17 |
51.6 |
3.9 |
N17 |
C9 |
N8 |
C10 |
180.2 |
180.4 |
N8 |
C9 |
C10 |
C6 |
0.4 |
0.4 |
N8 |
C9 |
C10 |
H10 |
180.4 |
180.1 |
C6 |
N7 |
N8 |
C9 |
1.8 |
0.3 |
N7 |
N8 |
C9 |
C11 |
175.5 |
179.8 |
C9 |
N8 |
C11 |
C12 |
141.3 |
319.7 |
C9 |
N8 |
C11 |
C16 |
323.6 |
139.7 |
C6 |
C10 |
C9 |
N8 |
0.4 |
0.4 |
C9 |
C10 |
C6 |
H10 |
180.0 |
179.8 |
C4 |
C6 |
C10 |
N7 |
178.8 |
180.0 |
C10 |
C6 |
C4 |
C5 |
6.5 |
179.7 |
C10 |
C6 |
C4 |
S3 |
189.1 |
0.0 |
C10 |
C6 |
N7 |
N8 |
358.4 |
360.0 |
H10 |
C10 |
C9 |
N8 |
180.4 |
180.1 |
C9 |
C10 |
H10 |
C6 |
180.0 |
180.3 |
H10 |
C10 |
C6 |
C4 |
359.4 |
360.0 |
H10 |
C10 |
C6 |
N7 |
180.7 |
180.0 |
C4 |
C6 |
C10 |
H10 |
359.4 |
360.0 |
C10 |
C6 |
C4 |
N7 |
181.5 |
180.0 |
C4 |
C6 |
N7 |
N8 |
179.7 |
180.0 |
C5 |
C4 |
C6 |
S3 |
177.4 |
179.6 |
C6 |
C4 |
C5 |
C1 |
181.8 |
179.8 |
C6 |
C4 |
C5 |
H5 |
1.8 |
0.4 |
C6 |
C4 |
S3 |
C2 |
178.4 |
180.0 |
C9 |
N8 |
N7 |
C6 |
1.8 |
0.3 |
N7 |
C6 |
C10 |
H10 |
180.7 |
180.0 |
C10 |
C6 |
N7 |
C4 |
178.8 |
180.0 |
N7 |
C6 |
C4 |
C5 |
185.0 |
359.7 |
N7 |
C6 |
C4 |
S3 |
7.6 |
180.0 |
C6 |
N7 |
N8 |
C11 |
177.4 |
180.0 |
C5 |
C4 |
C6 |
N7 |
185.0 |
359.7 |
C6 |
C4 |
C5 |
S3 |
182.2 |
180.3 |
C5 |
C4 |
S3 |
C2 |
0.4 |
0.2 |
C1 |
C5 |
C4 |
H5 |
180.0 |
179.4 |
C4 |
C5 |
C1 |
C2 |
0.2 |
0.6 |
C4 |
C5 |
C1 |
H1 |
180.2 |
180.3 |
S3 |
C4 |
C6 |
N7 |
7.6 |
180.0 |
C6 |
C4 |
S3 |
C5 |
178.0 |
179.7 |
S3 |
C4 |
C5 |
C1 |
359.6 |
359.5 |
S3 |
C4 |
C5 |
H5 |
179.6 |
180.1 |
C1 |
C2 |
S3 |
C4 |
359.8 |
0.0 |
C4 |
S3 |
C2 |
H2 |
179.7 |
180.0 |
C1 |
C5 |
C4 |
S3 |
359.6 |
359.5 |
C4 |
C5 |
C1 |
H5 |
180.0 |
180.6 |
C2 |
C1 |
C5 |
H1 |
180.0 |
180.3 |
C5 |
C1 |
C2 |
S3 |
0.1 |
359.7 |
C5 |
C1 |
C2 |
H2 |
180.1 |
179.7 |
H5 |
C5 |
C4 |
S3 |
179.6 |
180.1 |
C4 |
C5 |
H5 |
C1 |
180.0 |
179.4 |
H5 |
C5 |
C1 |
C2 |
180.3 |
180.0 |
H5 |
C5 |
C1 |
H1 |
0.3 |
359.7 |
C4 |
S3 |
C2 |
C1 |
359.8 |
0.0 |
C2 |
C1 |
C5 |
H5 |
180.3 |
180.0 |
C5 |
C1 |
C2 |
H1 |
180.0 |
179.7 |
S3 |
C2 |
C1 |
H2 |
180.0 |
179.9 |
H1 |
C1 |
C5 |
H5 |
0.3 |
359.7 |
C5 |
C1 |
H1 |
C2 |
180.0 |
180.3 |
H1 |
C1 |
C2 |
S3 |
180.1 |
180.0 |
H1 |
C1 |
C2 |
H2 |
0.1 |
0.0 |
S3 |
C2 |
C1 |
H1 |
180.1 |
180.0 |
C1 |
C2 |
S3 |
H2 |
180.0 |
180.1 |
H2 |
C2 |
C1 |
H1 |
0.1 |
0.0 |
C1 |
C2 |
H2 |
S3 |
180.0 |
179.9 |
C9 |
N8 |
N7 |
C11 |
184.4 |
180.2 |
N7 |
N8 |
C11 |
C12 |
326.5 |
140.0 |
N7 |
N8 |
C11 |
C16 |
148.7 |
320.0 |
C9 |
N8 |
C11 |
N7 |
174.8 |
179.7 |
C12 |
C11 |
N8 |
C16 |
177.7 |
180.0 |
N8 |
C11 |
C12 |
C13 |
181.3 |
179.8 |
N8 |
C11 |
C12 |
H12 |
1.3 |
0.0 |
N8 |
C11 |
C16 |
C15 |
178.3 |
180.0 |
N8 |
C11 |
C16 |
H16 |
358.3 |
0.0 |
N8 |
C11 |
C12 |
C16 |
182.3 |
180.0 |
C12 |
C11 |
C16 |
C15 |
0.6 |
0.1 |
C12 |
C11 |
C16 |
H16 |
180.6 |
180.0 |
C13 |
C12 |
C11 |
H12 |
180.0 |
179.8 |
C11 |
C12 |
C13 |
C14 |
0.6 |
0.5 |
C11 |
C12 |
C13 |
H13 |
180.6 |
180.0 |
N8 |
C11 |
C16 |
C12 |
177.7 |
180.0 |
C16 |
C11 |
C12 |
C13 |
359.1 |
359.8 |
C16 |
C11 |
C12 |
H12 |
179.1 |
180.0 |
C14 |
C15 |
C16 |
C11 |
0.1 |
359.9 |
C11 |
C16 |
C15 |
H15 |
180.1 |
180.0 |
C15 |
C16 |
C11 |
H16 |
180.0 |
180.0 |
C13 |
C12 |
C11 |
C16 |
359.1 |
359.8 |
C11 |
C12 |
C13 |
H12 |
180.0 |
180.2 |
C14 |
C13 |
C12 |
H13 |
180.0 |
180.4 |
C12 |
C13 |
C14 |
F27 |
179.1 |
179.8 |
C12 |
C13 |
C14 |
C15 |
0.0 |
359.5 |
H12 |
C12 |
C11 |
C16 |
179.1 |
180.0 |
C11 |
C12 |
H12 |
C13 |
180.0 |
179.8 |
H12 |
C12 |
C13 |
C14 |
180.6 |
180.2 |
H12 |
C12 |
C13 |
H13 |
0.6 |
359.8 |
C14 |
C13 |
C12 |
H12 |
180.6 |
180.2 |
C12 |
C13 |
C14 |
H13 |
180.0 |
179.6 |
F27 |
C14 |
C13 |
C15 |
179.1 |
180.3 |
C13 |
C14 |
C15 |
C16 |
359.6 |
0.3 |
C13 |
C14 |
C15 |
H15 |
179.6 |
180.2 |
H13 |
C13 |
C12 |
H12 |
0.6 |
359.8 |
C12 |
C13 |
H13 |
C14 |
180.0 |
180.4 |
H13 |
C13 |
C14 |
F27 |
359.1 |
0.2 |
H13 |
C13 |
C14 |
C15 |
180.0 |
179.9 |
F27 |
C14 |
C13 |
H13 |
359.1 |
0.2 |
C13 |
C14 |
F27 |
C15 |
180.9 |
179.7 |
F27 |
C14 |
C15 |
C16 |
180.5 |
180.0 |
F27 |
C14 |
C15 |
H15 |
0.5 |
359.9 |
C11 |
C16 |
C15 |
C14 |
0.1 |
359.9 |
C15 |
C14 |
C13 |
H13 |
180.0 |
179.9 |
C13 |
C14 |
C15 |
F27 |
179.1 |
180.3 |
C16 |
C15 |
C14 |
H15 |
180.0 |
180.1 |
C14 |
C15 |
C16 |
H16 |
180.0 |
179.9 |
C11 |
C16 |
C15 |
H16 |
180.0 |
180.0 |
C14 |
C15 |
C16 |
H15 |
180.0 |
179.9 |
C14 |
C15 |
H15 |
C16 |
180.0 |
180.1 |
H15 |
C15 |
C16 |
H16 |
0.1 |
0.1 |
C11 |
C16 |
H16 |
C15 |
180.0 |
180.0 |
H16 |
C16 |
C15 |
H15 |
0.1 |
0.1 |