Atom Nomenclature for SP0

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for SP0

Atom Name (V3) Atom Name (V2)
C22 C22
C23 C23
F40 F40
C24 C24
C25 C25
C26 C26
C21 C21
S18 S18
O19 O19
O20 O20
N17 N17
C9 C9
C10 C10
C6 C6
C4 C4
C5 C5
C1 C1
C2 C2
S3 S3
N7 N7
N8 N8
C11 C11
C12 C12
C13 C13
C14 C14
F27 F27
C15 C15
C16 C16
H22 H22
H24 H24
H25 H25
H26 H26
H17 H17
H10 H10
H5 H5
H1 H1
H2 H2
H12 H12
H13 H13
H15 H15
H16 H16