PDB Chemical Component SNY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SNY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
C1 |
1.433 |
1.401 |
| C6 |
C1 |
1.419 |
1.400 |
| C1 |
C7 |
1.496 |
1.468 |
| C3 |
C2 |
1.425 |
1.381 |
| C2 |
H2 |
1.080 |
1.080 |
| O3 |
C3 |
1.381 |
1.360 |
| C4 |
C3 |
1.507 |
1.393 |
| O3 |
C3M |
1.438 |
1.429 |
| O4 |
C4 |
1.364 |
1.359 |
| C4 |
C5 |
1.496 |
1.394 |
| O4 |
HO4 |
0.950 |
0.967 |
| O5 |
C5 |
1.364 |
1.360 |
| C5 |
C6 |
1.413 |
1.381 |
| O5 |
C5M |
1.424 |
1.429 |
| C6 |
H6 |
1.080 |
1.080 |
| C7 |
C8 |
1.340 |
1.356 |
| C7 |
H7 |
1.080 |
1.080 |
| C8 |
C9 |
1.458 |
1.407 |
| C8 |
H8 |
1.080 |
1.080 |
| C9 |
O9 |
1.215 |
1.214 |
| C9 |
H9 |
1.080 |
1.081 |
| C3M |
H3M |
1.100 |
1.090 |
| C3M |
H3MA |
1.100 |
1.090 |
| C3M |
H3MB |
1.100 |
1.090 |
| C5M |
H5M |
1.100 |
1.089 |
| C5M |
H5MA |
1.100 |
1.090 |
| C5M |
H5MB |
1.100 |
1.091 |
Bond Angles for SNY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C7 |
123.9 |
120.1 |
| C6 |
C1 |
C7 |
115.8 |
120.1 |
| C1 |
C7 |
C8 |
125.7 |
120.0 |
| C1 |
C7 |
H7 |
117.2 |
120.0 |
| C3 |
C2 |
H2 |
119.3 |
120.0 |
| O3 |
C3M |
H3M |
109.5 |
109.5 |
| O3 |
C3M |
H3MA |
109.4 |
109.5 |
| O3 |
C3M |
H3MB |
109.4 |
109.5 |
| O4 |
C4 |
C5 |
120.6 |
119.9 |
| C4 |
C5 |
C6 |
119.4 |
120.1 |
| O5 |
C5 |
C6 |
120.2 |
120.0 |
| C5 |
C6 |
H6 |
119.0 |
120.0 |
| O5 |
C5M |
H5M |
109.5 |
109.5 |
| O5 |
C5M |
H5MA |
109.5 |
109.5 |
| O5 |
C5M |
H5MB |
109.5 |
109.4 |
| C8 |
C7 |
H7 |
117.2 |
120.0 |
| C7 |
C8 |
C9 |
118.9 |
120.0 |
| C7 |
C8 |
H8 |
120.5 |
120.0 |
| C9 |
C8 |
H8 |
120.5 |
120.0 |
| C8 |
C9 |
O9 |
119.0 |
120.0 |
| C8 |
C9 |
H9 |
120.5 |
120.0 |
| O9 |
C9 |
H9 |
120.5 |
120.0 |
| H3M |
C3M |
H3MA |
109.5 |
109.4 |
| H3M |
C3M |
H3MB |
109.4 |
109.4 |
| H3MA |
C3M |
H3MB |
109.5 |
109.5 |
| H5M |
C5M |
H5MA |
109.5 |
109.5 |
| H5M |
C5M |
H5MB |
109.5 |
109.5 |
| H5MA |
C5M |
H5MB |
109.5 |
109.4 |
Torsion Angles for SNY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
C7 |
179.9 |
180.2 |
| C2 |
C1 |
C7 |
C8 |
357.9 |
180.0 |
| C2 |
C1 |
C7 |
H7 |
177.9 |
360.0 |
| C2 |
C1 |
C6 |
C7 |
180.0 |
179.8 |
| C6 |
C1 |
C7 |
C8 |
178.0 |
359.7 |
| C6 |
C1 |
C7 |
H7 |
358.0 |
179.7 |
| C8 |
C7 |
C1 |
H7 |
180.0 |
180.0 |
| C1 |
C7 |
C8 |
C9 |
180.0 |
180.0 |
| C1 |
C7 |
C8 |
H8 |
360.0 |
0.0 |
| C3 |
C2 |
C1 |
C7 |
180.1 |
180.0 |
| H2 |
C2 |
C1 |
C7 |
0.2 |
0.0 |
| O3 |
C3 |
C2 |
H2 |
359.8 |
360.0 |
| C4 |
C3 |
C2 |
H2 |
180.0 |
180.0 |
| H3M |
C3M |
O3 |
H3MA |
240.0 |
240.0 |
| H3M |
C3M |
O3 |
H3MB |
120.0 |
120.0 |
| H3MA |
C3M |
O3 |
H3MB |
240.0 |
239.9 |
| O4 |
C4 |
C5 |
C6 |
180.1 |
179.7 |
| O5 |
C5 |
C4 |
C6 |
180.1 |
180.3 |
| C4 |
C5 |
C6 |
H6 |
180.1 |
180.0 |
| HO4 |
O4 |
C4 |
C5 |
360.0 |
270.0 |
| C4 |
C5 |
O5 |
C6 |
179.9 |
179.7 |
| O5 |
C5 |
C6 |
H6 |
360.0 |
359.7 |
| C5 |
C6 |
C1 |
C7 |
179.8 |
179.7 |
| C5M |
O5 |
C5 |
C6 |
256.7 |
0.3 |
| H5M |
C5M |
O5 |
H5MA |
240.0 |
239.9 |
| H5M |
C5M |
O5 |
H5MB |
120.0 |
120.0 |
| H5MA |
C5M |
O5 |
H5MB |
240.0 |
240.0 |
| H6 |
C6 |
C1 |
C7 |
359.8 |
0.3 |
| C1 |
C7 |
C8 |
H7 |
180.0 |
180.0 |
| C9 |
C8 |
C7 |
H8 |
180.0 |
180.0 |
| C7 |
C8 |
C9 |
O9 |
179.8 |
180.0 |
| C7 |
C8 |
C9 |
H9 |
359.8 |
0.0 |
| C1 |
C7 |
H7 |
C8 |
180.0 |
180.0 |
| H7 |
C7 |
C8 |
C9 |
0.0 |
360.0 |
| H7 |
C7 |
C8 |
H8 |
180.0 |
180.0 |
| C9 |
C8 |
C7 |
H7 |
0.0 |
360.0 |
| C7 |
C8 |
C9 |
H8 |
180.0 |
180.0 |
| O9 |
C9 |
C8 |
H9 |
180.0 |
180.0 |
| H8 |
C8 |
C7 |
H7 |
180.0 |
180.0 |
| C7 |
C8 |
H8 |
C9 |
180.0 |
180.0 |
| H8 |
C8 |
C9 |
O9 |
359.8 |
360.0 |
| H8 |
C8 |
C9 |
H9 |
179.8 |
180.0 |
| O9 |
C9 |
C8 |
H8 |
359.8 |
360.0 |
| C8 |
C9 |
O9 |
H9 |
180.0 |
180.0 |
| H9 |
C9 |
C8 |
H8 |
179.8 |
180.0 |
| C8 |
C9 |
H9 |
O9 |
180.0 |
180.0 |
| O3 |
C3M |
H3M |
H3MA |
120.0 |
120.0 |
| O3 |
C3M |
H3M |
H3MB |
240.0 |
240.0 |
| H3MA |
C3M |
H3M |
H3MB |
120.0 |
120.0 |
| O3 |
C3M |
H3MA |
H3M |
240.0 |
240.0 |
| O3 |
C3M |
H3MA |
H3MB |
120.0 |
120.0 |
| H3M |
C3M |
H3MA |
H3MB |
240.0 |
240.0 |
| O3 |
C3M |
H3MB |
H3M |
120.0 |
120.0 |
| O3 |
C3M |
H3MB |
H3MA |
240.0 |
239.9 |
| H3M |
C3M |
H3MB |
H3MA |
120.0 |
120.0 |
| O5 |
C5M |
H5M |
H5MA |
120.0 |
120.1 |
| O5 |
C5M |
H5M |
H5MB |
240.0 |
240.1 |
| H5MA |
C5M |
H5M |
H5MB |
120.0 |
120.0 |
| O5 |
C5M |
H5MA |
H5M |
240.0 |
239.9 |
| O5 |
C5M |
H5MA |
H5MB |
120.0 |
120.0 |
| H5M |
C5M |
H5MA |
H5MB |
240.0 |
240.0 |
| O5 |
C5M |
H5MB |
H5M |
120.0 |
120.0 |
| O5 |
C5M |
H5MB |
H5MA |
240.0 |
240.0 |
| H5M |
C5M |
H5MB |
H5MA |
120.0 |
120.0 |