PDB Chemical Component SMG
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SMG
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O61 |
C6 |
1.249 |
1.342 |
| O61 |
H61 |
0.949 |
0.967 |
| O62 |
C6 |
1.255 |
1.208 |
| C6 |
C5 |
1.534 |
1.506 |
| C5 |
C4 |
1.533 |
1.530 |
| C5 |
H51 |
1.115 |
1.089 |
| C5 |
H52 |
1.114 |
1.091 |
| C4 |
C3 |
1.456 |
1.507 |
| C4 |
H41 |
1.114 |
1.089 |
| C4 |
H42 |
1.115 |
1.089 |
| O31 |
C3 |
1.234 |
1.213 |
| C3 |
N1 |
1.329 |
1.346 |
| N1 |
C1 |
1.456 |
1.465 |
| N1 |
HN1 |
1.020 |
0.970 |
| O11 |
C2 |
1.251 |
1.207 |
| O12 |
C2 |
1.250 |
1.342 |
| O12 |
H12 |
0.951 |
0.967 |
| C2 |
C1 |
1.507 |
1.507 |
| C1 |
CB |
1.513 |
1.529 |
| C1 |
H1 |
1.114 |
1.090 |
| CB |
CG |
1.519 |
1.529 |
| CB |
HB1 |
1.115 |
1.090 |
| CB |
HB2 |
1.115 |
1.089 |
| CG |
SD |
1.800 |
1.813 |
| CG |
HG1 |
1.115 |
1.090 |
| CG |
HG2 |
1.114 |
1.089 |
| SD |
CE |
1.800 |
1.814 |
| CE |
HE1 |
1.115 |
1.090 |
| CE |
HE2 |
1.115 |
1.089 |
| CE |
HE3 |
1.114 |
1.090 |
Bond Angles for SMG
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
O61 |
H61 |
120.0 |
120.1 |
| O61 |
C6 |
O62 |
120.0 |
119.9 |
| O61 |
C6 |
C5 |
117.7 |
120.0 |
| O62 |
C6 |
C5 |
122.2 |
120.0 |
| C6 |
C5 |
C4 |
109.1 |
109.5 |
| C6 |
C5 |
H51 |
112.3 |
109.5 |
| C6 |
C5 |
H52 |
112.3 |
109.5 |
| C4 |
C5 |
H51 |
112.3 |
109.5 |
| C4 |
C5 |
H52 |
112.4 |
109.4 |
| C5 |
C4 |
C3 |
113.3 |
109.5 |
| C5 |
C4 |
H41 |
110.8 |
109.5 |
| C5 |
C4 |
H42 |
110.7 |
109.5 |
| H51 |
C5 |
H52 |
98.1 |
109.5 |
| C3 |
C4 |
H41 |
110.8 |
109.4 |
| C3 |
C4 |
H42 |
110.8 |
109.5 |
| C4 |
C3 |
O31 |
119.2 |
119.9 |
| C4 |
C3 |
N1 |
120.4 |
120.0 |
| H41 |
C4 |
H42 |
99.5 |
109.5 |
| O31 |
C3 |
N1 |
120.3 |
120.0 |
| C3 |
N1 |
C1 |
119.4 |
120.1 |
| C3 |
N1 |
HN1 |
115.9 |
120.0 |
| C1 |
N1 |
HN1 |
124.7 |
120.0 |
| N1 |
C1 |
C2 |
107.5 |
109.5 |
| N1 |
C1 |
CB |
111.2 |
109.5 |
| N1 |
C1 |
H1 |
109.1 |
109.4 |
| O11 |
C2 |
O12 |
121.9 |
120.0 |
| O11 |
C2 |
C1 |
119.1 |
120.1 |
| C2 |
O12 |
H12 |
121.8 |
120.0 |
| O12 |
C2 |
C1 |
118.9 |
120.0 |
| C2 |
C1 |
CB |
107.7 |
109.5 |
| C2 |
C1 |
H1 |
112.5 |
109.4 |
| CB |
C1 |
H1 |
108.8 |
109.5 |
| C1 |
CB |
CG |
108.4 |
109.5 |
| C1 |
CB |
HB1 |
112.7 |
109.5 |
| C1 |
CB |
HB2 |
112.7 |
109.5 |
| CG |
CB |
HB1 |
112.6 |
109.4 |
| CG |
CB |
HB2 |
112.6 |
109.5 |
| CB |
CG |
SD |
113.8 |
109.5 |
| CB |
CG |
HG1 |
110.6 |
109.4 |
| CB |
CG |
HG2 |
110.6 |
109.5 |
| HB1 |
CB |
HB2 |
97.8 |
109.4 |
| SD |
CG |
HG1 |
110.6 |
109.5 |
| SD |
CG |
HG2 |
110.6 |
109.5 |
| CG |
SD |
CE |
114.7 |
100.0 |
| HG1 |
CG |
HG2 |
99.7 |
109.4 |
| SD |
CE |
HE1 |
114.7 |
109.5 |
| SD |
CE |
HE2 |
110.3 |
109.5 |
| SD |
CE |
HE3 |
110.3 |
109.4 |
| HE1 |
CE |
HE2 |
110.3 |
109.5 |
| HE1 |
CE |
HE3 |
110.3 |
109.5 |
| HE2 |
CE |
HE3 |
100.0 |
109.5 |
Torsion Angles for SMG
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O62 |
C6 |
O61 |
C5 |
178.2 |
179.9 |
| O61 |
C6 |
C5 |
C4 |
76.0 |
180.0 |
| O61 |
C6 |
C5 |
H51 |
201.3 |
59.9 |
| O61 |
C6 |
C5 |
H52 |
310.7 |
299.9 |
| H61 |
O61 |
C6 |
O62 |
180.0 |
360.0 |
| H61 |
O61 |
C6 |
C5 |
1.8 |
180.0 |
| O62 |
C6 |
O61 |
H61 |
180.0 |
360.0 |
| O61 |
C6 |
O62 |
C5 |
181.9 |
180.1 |
| O62 |
C6 |
C5 |
C4 |
257.9 |
0.1 |
| O62 |
C6 |
C5 |
H51 |
23.1 |
240.0 |
| O62 |
C6 |
C5 |
H52 |
132.6 |
120.0 |
| C5 |
C6 |
O61 |
H61 |
1.8 |
180.0 |
| O61 |
C6 |
C5 |
O62 |
178.1 |
179.9 |
| C4 |
C5 |
C6 |
H51 |
234.8 |
120.1 |
| C4 |
C5 |
C6 |
H52 |
125.3 |
240.1 |
| C6 |
C5 |
C4 |
C3 |
162.8 |
180.0 |
| C6 |
C5 |
C4 |
H41 |
288.1 |
60.0 |
| C6 |
C5 |
C4 |
H42 |
37.5 |
300.0 |
| H51 |
C5 |
C6 |
H52 |
250.6 |
120.0 |
| C6 |
C5 |
C4 |
H51 |
125.2 |
239.9 |
| C6 |
C5 |
C4 |
H52 |
234.7 |
120.0 |
| H51 |
C5 |
C4 |
H52 |
109.5 |
240.0 |
| C3 |
C4 |
C5 |
H41 |
234.7 |
120.0 |
| C3 |
C4 |
C5 |
H42 |
125.3 |
240.0 |
| C5 |
C4 |
C3 |
O31 |
90.1 |
360.0 |
| C5 |
C4 |
C3 |
N1 |
266.5 |
180.0 |
| H41 |
C4 |
C5 |
H42 |
250.6 |
120.0 |
| C6 |
C5 |
H51 |
C4 |
236.5 |
120.1 |
| C6 |
C5 |
H51 |
H52 |
118.2 |
240.0 |
| C4 |
C5 |
H51 |
H52 |
241.7 |
119.9 |
| H51 |
C5 |
C4 |
C3 |
37.5 |
300.0 |
| H51 |
C5 |
C4 |
H41 |
162.9 |
180.1 |
| H51 |
C5 |
C4 |
H42 |
272.3 |
60.1 |
| C6 |
C5 |
H52 |
C4 |
123.5 |
240.0 |
| C6 |
C5 |
H52 |
H51 |
241.8 |
120.0 |
| C4 |
C5 |
H52 |
H51 |
118.3 |
240.0 |
| H52 |
C5 |
C4 |
C3 |
288.1 |
60.0 |
| H52 |
C5 |
C4 |
H41 |
53.4 |
300.0 |
| H52 |
C5 |
C4 |
H42 |
162.8 |
180.0 |
| C3 |
C4 |
C5 |
H51 |
37.5 |
300.0 |
| C3 |
C4 |
C5 |
H52 |
288.1 |
60.0 |
| C5 |
C4 |
C3 |
H41 |
125.3 |
240.0 |
| C5 |
C4 |
C3 |
H42 |
234.8 |
120.0 |
| H41 |
C4 |
C3 |
H42 |
109.5 |
240.0 |
| O31 |
C3 |
C4 |
N1 |
183.7 |
180.0 |
| C4 |
C3 |
N1 |
C1 |
185.9 |
180.0 |
| C4 |
C3 |
N1 |
HN1 |
5.9 |
360.0 |
| H41 |
C4 |
C5 |
H51 |
162.9 |
180.1 |
| H41 |
C4 |
C5 |
H52 |
53.4 |
300.0 |
| C5 |
C4 |
H41 |
C3 |
233.3 |
120.0 |
| C5 |
C4 |
H41 |
H42 |
116.6 |
240.0 |
| C3 |
C4 |
H41 |
H42 |
243.3 |
120.0 |
| H41 |
C4 |
C3 |
O31 |
324.8 |
120.0 |
| H41 |
C4 |
C3 |
N1 |
141.2 |
300.0 |
| H42 |
C4 |
C5 |
H51 |
272.3 |
60.1 |
| H42 |
C4 |
C5 |
H52 |
162.8 |
180.0 |
| C5 |
C4 |
H42 |
C3 |
126.6 |
239.9 |
| C5 |
C4 |
H42 |
H41 |
243.3 |
120.0 |
| C3 |
C4 |
H42 |
H41 |
116.7 |
240.1 |
| H42 |
C4 |
C3 |
O31 |
215.4 |
240.0 |
| H42 |
C4 |
C3 |
N1 |
31.7 |
60.0 |
| O31 |
C3 |
C4 |
H41 |
324.8 |
120.0 |
| O31 |
C3 |
C4 |
H42 |
215.4 |
240.0 |
| C4 |
C3 |
O31 |
N1 |
176.3 |
180.0 |
| O31 |
C3 |
N1 |
C1 |
2.2 |
0.0 |
| O31 |
C3 |
N1 |
HN1 |
182.2 |
180.0 |
| N1 |
C3 |
C4 |
H41 |
141.2 |
300.0 |
| N1 |
C3 |
C4 |
H42 |
31.7 |
60.0 |
| C4 |
C3 |
N1 |
O31 |
183.7 |
180.0 |
| C1 |
N1 |
C3 |
HN1 |
180.0 |
180.1 |
| C3 |
N1 |
C1 |
C2 |
99.3 |
89.9 |
| C3 |
N1 |
C1 |
CB |
217.0 |
210.0 |
| C3 |
N1 |
C1 |
H1 |
337.1 |
330.0 |
| C3 |
N1 |
C1 |
HN1 |
180.0 |
179.9 |
| O11 |
C2 |
C1 |
N1 |
354.9 |
210.0 |
| O12 |
C2 |
C1 |
N1 |
177.6 |
30.1 |
| C2 |
C1 |
N1 |
CB |
242.3 |
239.9 |
| C2 |
C1 |
N1 |
H1 |
122.3 |
119.9 |
| CB |
C1 |
N1 |
H1 |
240.0 |
240.0 |
| N1 |
C1 |
CB |
CG |
11.8 |
59.9 |
| N1 |
C1 |
CB |
HB1 |
137.0 |
299.9 |
| N1 |
C1 |
CB |
HB2 |
246.5 |
180.0 |
| C3 |
N1 |
HN1 |
C1 |
180.0 |
180.1 |
| HN1 |
N1 |
C1 |
C2 |
279.3 |
270.0 |
| HN1 |
N1 |
C1 |
CB |
37.0 |
30.1 |
| HN1 |
N1 |
C1 |
H1 |
157.0 |
150.1 |
| N1 |
C1 |
C2 |
O11 |
354.9 |
210.0 |
| O11 |
C2 |
O12 |
H12 |
179.9 |
0.0 |
| O12 |
C2 |
O11 |
C1 |
177.2 |
179.9 |
| O11 |
C2 |
C1 |
CB |
234.9 |
89.9 |
| O11 |
C2 |
C1 |
H1 |
115.0 |
329.9 |
| N1 |
C1 |
C2 |
O12 |
177.6 |
30.1 |
| O11 |
C2 |
O12 |
C1 |
182.8 |
180.1 |
| O12 |
C2 |
C1 |
CB |
57.6 |
270.0 |
| O12 |
C2 |
C1 |
H1 |
297.7 |
150.0 |
| H12 |
O12 |
C2 |
C1 |
357.1 |
179.9 |
| C2 |
C1 |
N1 |
HN1 |
279.3 |
270.0 |
| N1 |
C1 |
C2 |
CB |
120.0 |
120.1 |
| N1 |
C1 |
C2 |
H1 |
239.9 |
240.1 |
| O11 |
C2 |
C1 |
O12 |
177.3 |
179.9 |
| C1 |
C2 |
O12 |
H12 |
357.1 |
179.9 |
| CB |
C1 |
C2 |
H1 |
119.9 |
120.0 |
| C2 |
C1 |
CB |
CG |
129.3 |
180.0 |
| C2 |
C1 |
CB |
HB1 |
254.6 |
60.0 |
| C2 |
C1 |
CB |
HB2 |
4.1 |
300.1 |
| CB |
C1 |
N1 |
HN1 |
37.0 |
30.1 |
| N1 |
C1 |
CB |
C2 |
242.4 |
239.9 |
| N1 |
C1 |
CB |
H1 |
120.2 |
119.9 |
| C2 |
C1 |
CB |
H1 |
237.7 |
240.0 |
| CG |
CB |
C1 |
HB1 |
234.8 |
120.0 |
| CG |
CB |
C1 |
HB2 |
125.2 |
240.0 |
| C1 |
CB |
CG |
SD |
129.9 |
180.0 |
| C1 |
CB |
CG |
HG1 |
255.1 |
60.0 |
| C1 |
CB |
CG |
HG2 |
4.6 |
300.1 |
| HB1 |
CB |
C1 |
HB2 |
250.5 |
120.0 |
| H1 |
C1 |
N1 |
HN1 |
157.0 |
150.1 |
| N1 |
C1 |
H1 |
C2 |
119.2 |
120.0 |
| N1 |
C1 |
H1 |
CB |
238.5 |
240.0 |
| C2 |
C1 |
H1 |
CB |
119.3 |
120.0 |
| H1 |
C1 |
CB |
CG |
251.6 |
300.0 |
| H1 |
C1 |
CB |
HB1 |
16.9 |
180.0 |
| H1 |
C1 |
CB |
HB2 |
126.4 |
60.0 |
| CG |
CB |
C1 |
H1 |
251.6 |
300.0 |
| C1 |
CB |
CG |
HB1 |
125.3 |
240.0 |
| C1 |
CB |
CG |
HB2 |
234.7 |
120.1 |
| HB1 |
CB |
CG |
HB2 |
109.4 |
240.1 |
| SD |
CG |
CB |
HG1 |
234.8 |
120.0 |
| SD |
CG |
CB |
HG2 |
125.3 |
240.0 |
| CB |
CG |
SD |
CE |
320.0 |
180.0 |
| HG1 |
CG |
CB |
HG2 |
250.5 |
119.9 |
| HB1 |
CB |
C1 |
H1 |
16.9 |
180.0 |
| C1 |
CB |
HB1 |
CG |
237.1 |
120.0 |
| C1 |
CB |
HB1 |
HB2 |
118.6 |
240.0 |
| CG |
CB |
HB1 |
HB2 |
241.5 |
119.9 |
| HB1 |
CB |
CG |
SD |
4.6 |
300.0 |
| HB1 |
CB |
CG |
HG1 |
129.8 |
180.0 |
| HB1 |
CB |
CG |
HG2 |
239.3 |
60.1 |
| HB2 |
CB |
C1 |
H1 |
126.4 |
60.0 |
| C1 |
CB |
HB2 |
CG |
122.9 |
240.0 |
| C1 |
CB |
HB2 |
HB1 |
241.4 |
120.0 |
| CG |
CB |
HB2 |
HB1 |
118.5 |
240.1 |
| HB2 |
CB |
CG |
SD |
255.2 |
60.0 |
| HB2 |
CB |
CG |
HG1 |
20.4 |
299.9 |
| HB2 |
CB |
CG |
HG2 |
129.9 |
180.0 |
| SD |
CG |
CB |
HB1 |
4.6 |
300.0 |
| SD |
CG |
CB |
HB2 |
255.2 |
60.0 |
| CB |
CG |
SD |
HG1 |
125.2 |
240.0 |
| CB |
CG |
SD |
HG2 |
234.7 |
120.0 |
| HG1 |
CG |
SD |
HG2 |
109.5 |
240.0 |
| CG |
SD |
CE |
HE1 |
180.0 |
180.0 |
| CG |
SD |
CE |
HE2 |
305.3 |
300.0 |
| CG |
SD |
CE |
HE3 |
54.7 |
60.0 |
| HG1 |
CG |
CB |
HB1 |
129.8 |
180.0 |
| HG1 |
CG |
CB |
HB2 |
20.4 |
299.9 |
| CB |
CG |
HG1 |
SD |
232.9 |
120.0 |
| CB |
CG |
HG1 |
HG2 |
116.5 |
240.1 |
| SD |
CG |
HG1 |
HG2 |
243.6 |
120.0 |
| HG1 |
CG |
SD |
CE |
194.8 |
300.0 |
| HG2 |
CG |
CB |
HB1 |
239.3 |
60.1 |
| HG2 |
CG |
CB |
HB2 |
129.9 |
180.0 |
| CB |
CG |
HG2 |
SD |
127.1 |
239.9 |
| CB |
CG |
HG2 |
HG1 |
243.5 |
119.9 |
| SD |
CG |
HG2 |
HG1 |
116.4 |
240.0 |
| HG2 |
CG |
SD |
CE |
85.3 |
60.0 |
| CE |
SD |
CG |
HG1 |
194.8 |
300.0 |
| CE |
SD |
CG |
HG2 |
85.3 |
60.0 |
| HE1 |
CE |
SD |
HE2 |
234.7 |
240.0 |
| HE1 |
CE |
SD |
HE3 |
125.2 |
120.0 |
| HE2 |
CE |
SD |
HE3 |
250.5 |
240.0 |
| SD |
CE |
HE1 |
HE2 |
125.2 |
120.0 |
| SD |
CE |
HE1 |
HE3 |
234.8 |
240.0 |
| HE2 |
CE |
HE1 |
HE3 |
109.6 |
120.0 |
| SD |
CE |
HE2 |
HE1 |
232.3 |
240.0 |
| SD |
CE |
HE2 |
HE3 |
116.1 |
120.0 |
| HE1 |
CE |
HE2 |
HE3 |
243.8 |
240.0 |
| SD |
CE |
HE3 |
HE1 |
127.7 |
120.0 |
| SD |
CE |
HE3 |
HE2 |
243.9 |
240.0 |
| HE1 |
CE |
HE3 |
HE2 |
116.2 |
120.0 |