PDB Chemical Component SMF

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SMF

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.470 1.441
N H 1.020 1.006
N H2 1.021 1.006
CA CB 1.535 1.534
CA C 1.502 1.522
CA HA 1.115 1.095
CB CG 1.504 1.510
CB HB2 1.115 1.098
CB HB3 1.115 1.099
CG CD1 1.409 1.385
CG CD2 1.413 1.386
CD1 CE1 1.410 1.395
CD1 HD1 1.103 1.087
CE1 CZ 1.415 1.394
CE1 HE1 1.103 1.087
CD2 CE2 1.407 1.395
CD2 HD2 1.103 1.087
CE2 CZ 1.409 1.395
CE2 HE2 1.103 1.086
CZ CH 1.511 1.492
CH S 1.819 1.764
CH HH2 1.115 1.095
CH HH3 1.115 1.096
S O1 1.421 1.452
S O2 1.522 1.452
S O3 1.420 1.632
O3 HO3 0.950 0.986
C O 1.233 1.226
C OXT   1.355
OXT HXT   0.981

Bond Angles for SMF

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N H 112.0 119.0
CA N H2 109.9 119.0
N CA CB 109.9 111.1
N CA C 108.6 111.1
N CA HA 109.8 106.2
H N H2 112.1 120.5
CB CA C 109.6 110.0
CB CA HA 108.8 111.4
CA CB CG 109.1 113.0
CA CB HB2 112.3 110.5
CA CB HB3 112.4 110.2
C CA HA 110.1 106.9
CA C O 121.0 123.0
CA C OXT   114.8
CG CB HB2 112.3 108.0
CG CB HB3 112.4 109.7
CB CG CD1 120.0 119.4
CB CG CD2 119.9 119.3
HB2 CB HB3 98.1 105.2
CD1 CG CD2 120.1 121.3
CG CD1 CE1 119.8 119.4
CG CD1 HD1 120.0 121.2
CG CD2 CE2 120.1 119.4
CG CD2 HD2 120.2 121.2
CE1 CD1 HD1 120.1 119.5
CD1 CE1 CZ 120.1 120.0
CD1 CE1 HE1 119.8 119.5
CZ CE1 HE1 120.1 120.5
CE1 CZ CE2 120.0 120.0
CE1 CZ CH 120.1 120.0
CE2 CD2 HD2 119.7 119.5
CD2 CE2 CZ 120.0 119.9
CD2 CE2 HE2 119.9 119.6
CZ CE2 HE2 120.1 120.5
CE2 CZ CH 119.9 120.0
CZ CH S 112.1 107.9
CZ CH HH2 111.3 112.3
CZ CH HH3 111.3 112.3
S CH HH2 111.2 107.9
S CH HH3 111.3 108.0
CH S O1 111.7 109.0
CH S O2 104.2 108.9
CH S O3 110.6 97.5
HH2 CH HH3 99.1 108.3
O1 S O2 103.6 121.5
O1 S O3 121.9 108.7
O2 S O3 102.4 108.7
S O3 HO3 110.6 115.4
O C OXT   122.2
C OXT HXT   114.8

Torsion Angles for SMF

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H N CA H2 234.7 166.6
CB CA N C 240.1 237.2
CB CA N HA 119.6 121.2
N CA CB CG 285.3 201.8
N CA CB HB2 160.1 322.9
N CA CB HB3 50.6 78.7
C CA N HA 239.6 244.1
N CA C O 151.3 325.5
N CA C OXT   145.1
CA N H H2 124.1 193.6
H N CA CB 54.7 144.3
H N CA C 174.6 267.1
H N CA HA 295.1 23.1
CA N H2 H 234.7 166.4
H2 N CA CB 180.0 337.7
H2 N CA C 299.9 100.5
H2 N CA HA 60.4 216.5
CB CA N H 54.7 144.3
CB CA N H2 180.0 337.7
N CA CB C 119.3 123.5
N CA CB HA 239.7 241.8
C CA CB HA 120.4 118.4
CB CA C O 271.4 88.9
CB CA C OXT   268.6
CG CB CA HB2 125.2 238.9
CG CB CA HB3 234.7 123.1
CA CB CG CD1 127.2 270.0
CA CB CG CD2 307.4 90.0
HB2 CB CA HB3 109.5 244.2
C CA N H 174.6 267.1
C CA N H2 299.9 100.5
N CA C CB 239.9 236.5
N CA C HA 120.3 115.5
CB CA C HA 240.4 238.9
C CA CB CG 166.0 78.3
C CA CB HB2 40.8 199.5
C CA CB HB3 291.3 315.3
O C CA OXT   180.3
CA C OXT HXT   180.4
HA CA N H 295.1 23.1
HA CA N H2 60.4 216.5
N CA HA CB 120.3 121.1
N CA HA C 240.5 241.3
CB CA HA C 120.1 120.2
HA CA CB CG 45.6 320.0
HA CA CB HB2 280.4 81.1
HA CA CB HB3 170.9 196.9
HA CA C O 31.0 210.0
HA CA C OXT   29.6
CG CB CA C 166.0 78.3
CG CB CA HA 45.6 320.0
CA CB CG HB2 234.8 122.5
CA CB CG HB3 125.3 236.7
HB2 CB CG HB3 250.5 114.2
CD1 CG CB CD2 179.8 180.0
CB CG CD1 CE1 180.4 180.0
CB CG CD1 HD1 0.4 0.1
CB CG CD2 CE2 179.6 180.0
CB CG CD2 HD2 359.6 360.0
HB2 CB CA C 40.8 199.5
HB2 CB CA HA 280.4 81.1
CA CB HB2 CG 123.4 236.0
CA CB HB2 HB3 241.7 118.9
CG CB HB2 HB3 118.3 242.9
HB2 CB CG CD1 252.5 147.5
HB2 CB CG CD2 72.6 327.5
HB3 CB CA C 291.3 315.3
HB3 CB CA HA 170.9 196.9
CA CB HB3 CG 236.5 125.0
CA CB HB3 HB2 118.3 240.9
CG CB HB3 HB2 241.7 116.0
HB3 CB CG CD1 2.0 33.3
HB3 CB CG CD2 182.1 213.3
CD1 CG CB HB2 252.5 147.5
CD1 CG CB HB3 2.0 33.3
CB CG CD1 CD2 180.2 180.0
CD1 CG CD2 CE2 359.8 0.0
CD1 CG CD2 HD2 179.8 180.0
CE1 CD1 CG HD1 180.0 179.9
CG CD1 CE1 CZ 360.0 0.1
CG CD1 CE1 HE1 180.0 180.0
CD2 CG CB HB2 72.6 327.5
CD2 CG CB HB3 182.1 213.3
CB CG CD2 CD1 179.8 180.0
CD2 CG CD1 CE1 0.2 359.9
CD2 CG CD1 HD1 180.2 180.0
CE2 CD2 CG HD2 180.0 180.0
CG CD2 CE2 CZ 0.0 360.0
CG CD2 CE2 HE2 180.0 180.0
CE1 CD1 CG CD2 0.2 359.9
CG CD1 CE1 HD1 180.0 180.1
CZ CE1 CD1 HE1 180.0 180.1
CD1 CE1 CZ CE2 359.9 359.9
CD1 CE1 CZ CH 179.4 180.0
HD1 CD1 CG CD2 180.2 180.0
CG CD1 HD1 CE1 180.0 179.9
HD1 CD1 CE1 CZ 180.0 180.0
HD1 CD1 CE1 HE1 359.9 359.9
CZ CE1 CD1 HD1 180.0 180.0
CD1 CE1 CZ HE1 180.0 179.9
CD2 CE2 CZ CE1 0.1 0.1
CE1 CZ CE2 HE2 180.2 180.0
CE2 CZ CE1 CH 180.5 179.9
CE1 CZ CH S 87.3 89.9
CE1 CZ CH HH2 322.0 331.1
CE1 CZ CH HH3 212.6 208.8
HE1 CE1 CD1 HD1 359.9 359.9
CD1 CE1 HE1 CZ 180.0 180.1
HE1 CE1 CZ CE2 179.9 180.0
HE1 CE1 CZ CH 359.4 0.2
CG CD2 CE2 HD2 180.0 180.0
CE1 CZ CE2 CD2 0.1 0.1
CZ CE2 CD2 HE2 180.0 180.0
CD2 CE2 CZ CH 180.6 179.9
CG CD2 HD2 CE2 180.0 180.0
HD2 CD2 CE2 CZ 180.0 180.0
HD2 CD2 CE2 HE2 0.0 360.0
CE2 CZ CE1 HE1 179.9 180.0
CE1 CZ CE2 CH 179.5 180.1
CZ CE2 CD2 HD2 180.0 180.0
CD2 CE2 CZ HE2 180.0 180.0
CE2 CZ CH S 266.8 270.1
CE2 CZ CH HH2 141.6 151.3
CE2 CZ CH HH3 32.1 28.9
HE2 CE2 CD2 HD2 0.0 360.0
CD2 CE2 HE2 CZ 180.0 180.0
HE2 CE2 CZ CH 0.6 359.9
CH CZ CE1 HE1 359.4 0.2
CE1 CZ CH CE2 180.5 179.9
CH CZ CE2 HE2 0.6 359.9
S CH CZ HH2 125.2 118.8
S CH CZ HH3 234.7 241.1
CZ CH S O1 59.6 60.1
CZ CH S O2 308.3 285.6
CZ CH S O3 198.9 172.8
HH2 CH CZ HH3 109.5 122.3
CZ CH S HH2 234.7 238.4
CZ CH S HH3 125.3 121.6
HH2 CH S HH3 250.6 243.1
O1 S CH O2 111.2 134.5
O1 S CH O3 220.7 247.2
O2 S CH O3 109.5 112.7
CH S O3 HO3 180.0 288.9
CZ CH HH2 S 125.7 118.8
CZ CH HH2 HH3 242.8 235.4
S CH HH2 HH3 117.1 116.6
HH2 CH S O1 184.8 181.6
HH2 CH S O2 73.6 47.1
HH2 CH S O3 324.1 294.4
CZ CH HH3 S 234.3 241.2
CZ CH HH3 HH2 117.2 124.6
S CH HH3 HH2 242.9 243.4
HH3 CH S O1 294.3 298.5
HH3 CH S O2 183.0 164.0
HH3 CH S O3 73.6 51.2
O1 S CH HH2 184.8 181.6
O1 S CH HH3 294.3 298.5
CH S O1 O2 248.4 232.3
CH S O1 O3 134.0 105.2
O2 S O1 O3 245.7 232.8
O1 S O3 HO3 314.4 41.9
O2 S CH HH2 73.6 47.1
O2 S CH HH3 183.0 164.0
CH S O2 O1 117.0 127.7
CH S O2 O3 244.6 254.9
O1 S O2 O3 127.6 127.2
O2 S O3 HO3 69.4 176.0
O3 S CH HH2 324.1 294.4
O3 S CH HH3 73.6 51.2
CH S O3 O1 225.5 247.0
CH S O3 O2 110.6 112.9
O1 S O3 O2 245.1 225.8
O C CA HA 31.0 210.0
CA C O OXT   179.6
O C OXT HXT   0.0
OXT C CA HA   29.6
CA C OXT O   180.3