PDB Chemical Component SMF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SMF
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N |
CA |
1.470 |
1.441 |
N |
H |
1.020 |
1.006 |
N |
H2 |
1.021 |
1.006 |
CA |
CB |
1.535 |
1.534 |
CA |
C |
1.502 |
1.522 |
CA |
HA |
1.115 |
1.095 |
CB |
CG |
1.504 |
1.510 |
CB |
HB2 |
1.115 |
1.098 |
CB |
HB3 |
1.115 |
1.099 |
CG |
CD1 |
1.409 |
1.385 |
CG |
CD2 |
1.413 |
1.386 |
CD1 |
CE1 |
1.410 |
1.395 |
CD1 |
HD1 |
1.103 |
1.087 |
CE1 |
CZ |
1.415 |
1.394 |
CE1 |
HE1 |
1.103 |
1.087 |
CD2 |
CE2 |
1.407 |
1.395 |
CD2 |
HD2 |
1.103 |
1.087 |
CE2 |
CZ |
1.409 |
1.395 |
CE2 |
HE2 |
1.103 |
1.086 |
CZ |
CH |
1.511 |
1.492 |
CH |
S |
1.819 |
1.764 |
CH |
HH2 |
1.115 |
1.095 |
CH |
HH3 |
1.115 |
1.096 |
S |
O1 |
1.421 |
1.452 |
S |
O2 |
1.522 |
1.452 |
S |
O3 |
1.420 |
1.632 |
O3 |
HO3 |
0.950 |
0.986 |
C |
O |
1.233 |
1.226 |
C |
OXT |
|
1.355 |
OXT |
HXT |
|
0.981 |
Bond Angles for SMF
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
CA |
N |
H |
112.0 |
119.0 |
CA |
N |
H2 |
109.9 |
119.0 |
N |
CA |
CB |
109.9 |
111.1 |
N |
CA |
C |
108.6 |
111.1 |
N |
CA |
HA |
109.8 |
106.2 |
H |
N |
H2 |
112.1 |
120.5 |
CB |
CA |
C |
109.6 |
110.0 |
CB |
CA |
HA |
108.8 |
111.4 |
CA |
CB |
CG |
109.1 |
113.0 |
CA |
CB |
HB2 |
112.3 |
110.5 |
CA |
CB |
HB3 |
112.4 |
110.2 |
C |
CA |
HA |
110.1 |
106.9 |
CA |
C |
O |
121.0 |
123.0 |
CA |
C |
OXT |
|
114.8 |
CG |
CB |
HB2 |
112.3 |
108.0 |
CG |
CB |
HB3 |
112.4 |
109.7 |
CB |
CG |
CD1 |
120.0 |
119.4 |
CB |
CG |
CD2 |
119.9 |
119.3 |
HB2 |
CB |
HB3 |
98.1 |
105.2 |
CD1 |
CG |
CD2 |
120.1 |
121.3 |
CG |
CD1 |
CE1 |
119.8 |
119.4 |
CG |
CD1 |
HD1 |
120.0 |
121.2 |
CG |
CD2 |
CE2 |
120.1 |
119.4 |
CG |
CD2 |
HD2 |
120.2 |
121.2 |
CE1 |
CD1 |
HD1 |
120.1 |
119.5 |
CD1 |
CE1 |
CZ |
120.1 |
120.0 |
CD1 |
CE1 |
HE1 |
119.8 |
119.5 |
CZ |
CE1 |
HE1 |
120.1 |
120.5 |
CE1 |
CZ |
CE2 |
120.0 |
120.0 |
CE1 |
CZ |
CH |
120.1 |
120.0 |
CE2 |
CD2 |
HD2 |
119.7 |
119.5 |
CD2 |
CE2 |
CZ |
120.0 |
119.9 |
CD2 |
CE2 |
HE2 |
119.9 |
119.6 |
CZ |
CE2 |
HE2 |
120.1 |
120.5 |
CE2 |
CZ |
CH |
119.9 |
120.0 |
CZ |
CH |
S |
112.1 |
107.9 |
CZ |
CH |
HH2 |
111.3 |
112.3 |
CZ |
CH |
HH3 |
111.3 |
112.3 |
S |
CH |
HH2 |
111.2 |
107.9 |
S |
CH |
HH3 |
111.3 |
108.0 |
CH |
S |
O1 |
111.7 |
109.0 |
CH |
S |
O2 |
104.2 |
108.9 |
CH |
S |
O3 |
110.6 |
97.5 |
HH2 |
CH |
HH3 |
99.1 |
108.3 |
O1 |
S |
O2 |
103.6 |
121.5 |
O1 |
S |
O3 |
121.9 |
108.7 |
O2 |
S |
O3 |
102.4 |
108.7 |
S |
O3 |
HO3 |
110.6 |
115.4 |
O |
C |
OXT |
|
122.2 |
C |
OXT |
HXT |
|
114.8 |
Torsion Angles for SMF
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
H |
N |
CA |
H2 |
234.7 |
166.6 |
CB |
CA |
N |
C |
240.1 |
237.2 |
CB |
CA |
N |
HA |
119.6 |
121.2 |
N |
CA |
CB |
CG |
285.3 |
201.8 |
N |
CA |
CB |
HB2 |
160.1 |
322.9 |
N |
CA |
CB |
HB3 |
50.6 |
78.7 |
C |
CA |
N |
HA |
239.6 |
244.1 |
N |
CA |
C |
O |
151.3 |
325.5 |
N |
CA |
C |
OXT |
|
145.1 |
CA |
N |
H |
H2 |
124.1 |
193.6 |
H |
N |
CA |
CB |
54.7 |
144.3 |
H |
N |
CA |
C |
174.6 |
267.1 |
H |
N |
CA |
HA |
295.1 |
23.1 |
CA |
N |
H2 |
H |
234.7 |
166.4 |
H2 |
N |
CA |
CB |
180.0 |
337.7 |
H2 |
N |
CA |
C |
299.9 |
100.5 |
H2 |
N |
CA |
HA |
60.4 |
216.5 |
CB |
CA |
N |
H |
54.7 |
144.3 |
CB |
CA |
N |
H2 |
180.0 |
337.7 |
N |
CA |
CB |
C |
119.3 |
123.5 |
N |
CA |
CB |
HA |
239.7 |
241.8 |
C |
CA |
CB |
HA |
120.4 |
118.4 |
CB |
CA |
C |
O |
271.4 |
88.9 |
CB |
CA |
C |
OXT |
|
268.6 |
CG |
CB |
CA |
HB2 |
125.2 |
238.9 |
CG |
CB |
CA |
HB3 |
234.7 |
123.1 |
CA |
CB |
CG |
CD1 |
127.2 |
270.0 |
CA |
CB |
CG |
CD2 |
307.4 |
90.0 |
HB2 |
CB |
CA |
HB3 |
109.5 |
244.2 |
C |
CA |
N |
H |
174.6 |
267.1 |
C |
CA |
N |
H2 |
299.9 |
100.5 |
N |
CA |
C |
CB |
239.9 |
236.5 |
N |
CA |
C |
HA |
120.3 |
115.5 |
CB |
CA |
C |
HA |
240.4 |
238.9 |
C |
CA |
CB |
CG |
166.0 |
78.3 |
C |
CA |
CB |
HB2 |
40.8 |
199.5 |
C |
CA |
CB |
HB3 |
291.3 |
315.3 |
O |
C |
CA |
OXT |
|
180.3 |
CA |
C |
OXT |
HXT |
|
180.4 |
HA |
CA |
N |
H |
295.1 |
23.1 |
HA |
CA |
N |
H2 |
60.4 |
216.5 |
N |
CA |
HA |
CB |
120.3 |
121.1 |
N |
CA |
HA |
C |
240.5 |
241.3 |
CB |
CA |
HA |
C |
120.1 |
120.2 |
HA |
CA |
CB |
CG |
45.6 |
320.0 |
HA |
CA |
CB |
HB2 |
280.4 |
81.1 |
HA |
CA |
CB |
HB3 |
170.9 |
196.9 |
HA |
CA |
C |
O |
31.0 |
210.0 |
HA |
CA |
C |
OXT |
|
29.6 |
CG |
CB |
CA |
C |
166.0 |
78.3 |
CG |
CB |
CA |
HA |
45.6 |
320.0 |
CA |
CB |
CG |
HB2 |
234.8 |
122.5 |
CA |
CB |
CG |
HB3 |
125.3 |
236.7 |
HB2 |
CB |
CG |
HB3 |
250.5 |
114.2 |
CD1 |
CG |
CB |
CD2 |
179.8 |
180.0 |
CB |
CG |
CD1 |
CE1 |
180.4 |
180.0 |
CB |
CG |
CD1 |
HD1 |
0.4 |
0.1 |
CB |
CG |
CD2 |
CE2 |
179.6 |
180.0 |
CB |
CG |
CD2 |
HD2 |
359.6 |
360.0 |
HB2 |
CB |
CA |
C |
40.8 |
199.5 |
HB2 |
CB |
CA |
HA |
280.4 |
81.1 |
CA |
CB |
HB2 |
CG |
123.4 |
236.0 |
CA |
CB |
HB2 |
HB3 |
241.7 |
118.9 |
CG |
CB |
HB2 |
HB3 |
118.3 |
242.9 |
HB2 |
CB |
CG |
CD1 |
252.5 |
147.5 |
HB2 |
CB |
CG |
CD2 |
72.6 |
327.5 |
HB3 |
CB |
CA |
C |
291.3 |
315.3 |
HB3 |
CB |
CA |
HA |
170.9 |
196.9 |
CA |
CB |
HB3 |
CG |
236.5 |
125.0 |
CA |
CB |
HB3 |
HB2 |
118.3 |
240.9 |
CG |
CB |
HB3 |
HB2 |
241.7 |
116.0 |
HB3 |
CB |
CG |
CD1 |
2.0 |
33.3 |
HB3 |
CB |
CG |
CD2 |
182.1 |
213.3 |
CD1 |
CG |
CB |
HB2 |
252.5 |
147.5 |
CD1 |
CG |
CB |
HB3 |
2.0 |
33.3 |
CB |
CG |
CD1 |
CD2 |
180.2 |
180.0 |
CD1 |
CG |
CD2 |
CE2 |
359.8 |
0.0 |
CD1 |
CG |
CD2 |
HD2 |
179.8 |
180.0 |
CE1 |
CD1 |
CG |
HD1 |
180.0 |
179.9 |
CG |
CD1 |
CE1 |
CZ |
360.0 |
0.1 |
CG |
CD1 |
CE1 |
HE1 |
180.0 |
180.0 |
CD2 |
CG |
CB |
HB2 |
72.6 |
327.5 |
CD2 |
CG |
CB |
HB3 |
182.1 |
213.3 |
CB |
CG |
CD2 |
CD1 |
179.8 |
180.0 |
CD2 |
CG |
CD1 |
CE1 |
0.2 |
359.9 |
CD2 |
CG |
CD1 |
HD1 |
180.2 |
180.0 |
CE2 |
CD2 |
CG |
HD2 |
180.0 |
180.0 |
CG |
CD2 |
CE2 |
CZ |
0.0 |
360.0 |
CG |
CD2 |
CE2 |
HE2 |
180.0 |
180.0 |
CE1 |
CD1 |
CG |
CD2 |
0.2 |
359.9 |
CG |
CD1 |
CE1 |
HD1 |
180.0 |
180.1 |
CZ |
CE1 |
CD1 |
HE1 |
180.0 |
180.1 |
CD1 |
CE1 |
CZ |
CE2 |
359.9 |
359.9 |
CD1 |
CE1 |
CZ |
CH |
179.4 |
180.0 |
HD1 |
CD1 |
CG |
CD2 |
180.2 |
180.0 |
CG |
CD1 |
HD1 |
CE1 |
180.0 |
179.9 |
HD1 |
CD1 |
CE1 |
CZ |
180.0 |
180.0 |
HD1 |
CD1 |
CE1 |
HE1 |
359.9 |
359.9 |
CZ |
CE1 |
CD1 |
HD1 |
180.0 |
180.0 |
CD1 |
CE1 |
CZ |
HE1 |
180.0 |
179.9 |
CD2 |
CE2 |
CZ |
CE1 |
0.1 |
0.1 |
CE1 |
CZ |
CE2 |
HE2 |
180.2 |
180.0 |
CE2 |
CZ |
CE1 |
CH |
180.5 |
179.9 |
CE1 |
CZ |
CH |
S |
87.3 |
89.9 |
CE1 |
CZ |
CH |
HH2 |
322.0 |
331.1 |
CE1 |
CZ |
CH |
HH3 |
212.6 |
208.8 |
HE1 |
CE1 |
CD1 |
HD1 |
359.9 |
359.9 |
CD1 |
CE1 |
HE1 |
CZ |
180.0 |
180.1 |
HE1 |
CE1 |
CZ |
CE2 |
179.9 |
180.0 |
HE1 |
CE1 |
CZ |
CH |
359.4 |
0.2 |
CG |
CD2 |
CE2 |
HD2 |
180.0 |
180.0 |
CE1 |
CZ |
CE2 |
CD2 |
0.1 |
0.1 |
CZ |
CE2 |
CD2 |
HE2 |
180.0 |
180.0 |
CD2 |
CE2 |
CZ |
CH |
180.6 |
179.9 |
CG |
CD2 |
HD2 |
CE2 |
180.0 |
180.0 |
HD2 |
CD2 |
CE2 |
CZ |
180.0 |
180.0 |
HD2 |
CD2 |
CE2 |
HE2 |
0.0 |
360.0 |
CE2 |
CZ |
CE1 |
HE1 |
179.9 |
180.0 |
CE1 |
CZ |
CE2 |
CH |
179.5 |
180.1 |
CZ |
CE2 |
CD2 |
HD2 |
180.0 |
180.0 |
CD2 |
CE2 |
CZ |
HE2 |
180.0 |
180.0 |
CE2 |
CZ |
CH |
S |
266.8 |
270.1 |
CE2 |
CZ |
CH |
HH2 |
141.6 |
151.3 |
CE2 |
CZ |
CH |
HH3 |
32.1 |
28.9 |
HE2 |
CE2 |
CD2 |
HD2 |
0.0 |
360.0 |
CD2 |
CE2 |
HE2 |
CZ |
180.0 |
180.0 |
HE2 |
CE2 |
CZ |
CH |
0.6 |
359.9 |
CH |
CZ |
CE1 |
HE1 |
359.4 |
0.2 |
CE1 |
CZ |
CH |
CE2 |
180.5 |
179.9 |
CH |
CZ |
CE2 |
HE2 |
0.6 |
359.9 |
S |
CH |
CZ |
HH2 |
125.2 |
118.8 |
S |
CH |
CZ |
HH3 |
234.7 |
241.1 |
CZ |
CH |
S |
O1 |
59.6 |
60.1 |
CZ |
CH |
S |
O2 |
308.3 |
285.6 |
CZ |
CH |
S |
O3 |
198.9 |
172.8 |
HH2 |
CH |
CZ |
HH3 |
109.5 |
122.3 |
CZ |
CH |
S |
HH2 |
234.7 |
238.4 |
CZ |
CH |
S |
HH3 |
125.3 |
121.6 |
HH2 |
CH |
S |
HH3 |
250.6 |
243.1 |
O1 |
S |
CH |
O2 |
111.2 |
134.5 |
O1 |
S |
CH |
O3 |
220.7 |
247.2 |
O2 |
S |
CH |
O3 |
109.5 |
112.7 |
CH |
S |
O3 |
HO3 |
180.0 |
288.9 |
CZ |
CH |
HH2 |
S |
125.7 |
118.8 |
CZ |
CH |
HH2 |
HH3 |
242.8 |
235.4 |
S |
CH |
HH2 |
HH3 |
117.1 |
116.6 |
HH2 |
CH |
S |
O1 |
184.8 |
181.6 |
HH2 |
CH |
S |
O2 |
73.6 |
47.1 |
HH2 |
CH |
S |
O3 |
324.1 |
294.4 |
CZ |
CH |
HH3 |
S |
234.3 |
241.2 |
CZ |
CH |
HH3 |
HH2 |
117.2 |
124.6 |
S |
CH |
HH3 |
HH2 |
242.9 |
243.4 |
HH3 |
CH |
S |
O1 |
294.3 |
298.5 |
HH3 |
CH |
S |
O2 |
183.0 |
164.0 |
HH3 |
CH |
S |
O3 |
73.6 |
51.2 |
O1 |
S |
CH |
HH2 |
184.8 |
181.6 |
O1 |
S |
CH |
HH3 |
294.3 |
298.5 |
CH |
S |
O1 |
O2 |
248.4 |
232.3 |
CH |
S |
O1 |
O3 |
134.0 |
105.2 |
O2 |
S |
O1 |
O3 |
245.7 |
232.8 |
O1 |
S |
O3 |
HO3 |
314.4 |
41.9 |
O2 |
S |
CH |
HH2 |
73.6 |
47.1 |
O2 |
S |
CH |
HH3 |
183.0 |
164.0 |
CH |
S |
O2 |
O1 |
117.0 |
127.7 |
CH |
S |
O2 |
O3 |
244.6 |
254.9 |
O1 |
S |
O2 |
O3 |
127.6 |
127.2 |
O2 |
S |
O3 |
HO3 |
69.4 |
176.0 |
O3 |
S |
CH |
HH2 |
324.1 |
294.4 |
O3 |
S |
CH |
HH3 |
73.6 |
51.2 |
CH |
S |
O3 |
O1 |
225.5 |
247.0 |
CH |
S |
O3 |
O2 |
110.6 |
112.9 |
O1 |
S |
O3 |
O2 |
245.1 |
225.8 |
O |
C |
CA |
HA |
31.0 |
210.0 |
CA |
C |
O |
OXT |
|
179.6 |
O |
C |
OXT |
HXT |
|
0.0 |
OXT |
C |
CA |
HA |
|
29.6 |
CA |
C |
OXT |
O |
|
180.3 |