PDB Chemical Component SME
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SME
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.490 |
1.469 |
| N |
H |
0.977 |
1.009 |
| N |
H2 |
1.020 |
1.009 |
| CA |
CB |
1.555 |
1.529 |
| CA |
C |
1.536 |
1.506 |
| CA |
HA |
1.075 |
1.090 |
| CB |
CG |
1.538 |
1.530 |
| CB |
HB2 |
1.080 |
1.090 |
| CB |
HB3 |
1.080 |
1.089 |
| CG |
S |
1.801 |
1.814 |
| CG |
HG2 |
1.081 |
1.090 |
| CG |
HG3 |
1.080 |
1.090 |
| S |
OE |
1.480 |
1.420 |
| S |
CE |
1.801 |
1.814 |
| CE |
HE1 |
1.080 |
1.090 |
| CE |
HE2 |
1.080 |
1.090 |
| CE |
HE3 |
1.080 |
1.090 |
| C |
O |
1.217 |
1.207 |
| C |
OXT |
1.308 |
1.343 |
| OXT |
HXT |
0.951 |
0.967 |
Bond Angles for SME
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
119.2 |
106.7 |
| CA |
N |
H2 |
112.5 |
106.6 |
| N |
CA |
CB |
108.7 |
109.5 |
| N |
CA |
C |
108.6 |
109.4 |
| N |
CA |
HA |
107.6 |
109.4 |
| H |
N |
H2 |
125.3 |
106.7 |
| CB |
CA |
C |
111.2 |
109.5 |
| CB |
CA |
HA |
112.6 |
109.5 |
| CA |
CB |
CG |
109.7 |
109.5 |
| CA |
CB |
HB2 |
110.5 |
109.5 |
| CA |
CB |
HB3 |
110.0 |
109.5 |
| C |
CA |
HA |
108.1 |
109.5 |
| CA |
C |
O |
121.9 |
120.1 |
| CA |
C |
OXT |
113.9 |
120.0 |
| CG |
CB |
HB2 |
109.7 |
109.4 |
| CG |
CB |
HB3 |
108.9 |
109.5 |
| CB |
CG |
S |
108.9 |
109.5 |
| CB |
CG |
HG2 |
110.3 |
109.5 |
| CB |
CG |
HG3 |
110.3 |
109.5 |
| HB2 |
CB |
HB3 |
108.1 |
109.5 |
| S |
CG |
HG2 |
109.0 |
109.5 |
| S |
CG |
HG3 |
109.0 |
109.5 |
| CG |
S |
OE |
108.1 |
109.5 |
| CG |
S |
CE |
97.8 |
100.0 |
| HG2 |
CG |
HG3 |
109.2 |
109.4 |
| OE |
S |
CE |
107.9 |
109.5 |
| S |
CE |
HE1 |
109.5 |
109.4 |
| S |
CE |
HE2 |
109.4 |
109.4 |
| S |
CE |
HE3 |
109.5 |
109.4 |
| HE1 |
CE |
HE2 |
109.4 |
109.5 |
| HE1 |
CE |
HE3 |
109.5 |
109.5 |
| HE2 |
CE |
HE3 |
109.4 |
109.5 |
| O |
C |
OXT |
124.2 |
119.9 |
| C |
OXT |
HXT |
113.9 |
120.0 |
Torsion Angles for SME
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
198.6 |
113.7 |
| CB |
CA |
N |
C |
238.9 |
239.9 |
| CB |
CA |
N |
HA |
122.1 |
120.0 |
| N |
CA |
CB |
CG |
210.7 |
300.0 |
| N |
CA |
CB |
HB2 |
89.7 |
180.1 |
| N |
CA |
CB |
HB3 |
330.5 |
60.1 |
| C |
CA |
N |
HA |
243.2 |
240.1 |
| N |
CA |
C |
O |
212.6 |
329.9 |
| N |
CA |
C |
OXT |
32.7 |
150.0 |
| CA |
N |
H |
H2 |
158.8 |
246.3 |
| H |
N |
CA |
CB |
253.3 |
53.7 |
| H |
N |
CA |
C |
14.4 |
173.8 |
| H |
N |
CA |
HA |
131.2 |
293.7 |
| CA |
N |
H2 |
H |
200.0 |
113.7 |
| H2 |
N |
CA |
CB |
54.7 |
300.0 |
| H2 |
N |
CA |
C |
175.8 |
60.1 |
| H2 |
N |
CA |
HA |
292.6 |
180.0 |
| CB |
CA |
N |
H |
253.3 |
53.7 |
| CB |
CA |
N |
H2 |
54.7 |
300.0 |
| N |
CA |
CB |
C |
119.5 |
120.0 |
| N |
CA |
CB |
HA |
240.9 |
240.1 |
| C |
CA |
CB |
HA |
121.4 |
120.0 |
| CB |
CA |
C |
O |
332.1 |
89.9 |
| CB |
CA |
C |
OXT |
152.2 |
270.0 |
| CG |
CB |
CA |
HB2 |
121.0 |
119.9 |
| CG |
CB |
CA |
HB3 |
240.2 |
239.9 |
| CA |
CB |
CG |
S |
176.3 |
180.0 |
| CA |
CB |
CG |
HG2 |
56.7 |
60.0 |
| CA |
CB |
CG |
HG3 |
295.9 |
300.1 |
| HB2 |
CB |
CA |
HB3 |
119.2 |
120.0 |
| C |
CA |
N |
H |
14.4 |
173.8 |
| C |
CA |
N |
H2 |
175.8 |
60.1 |
| N |
CA |
C |
CB |
240.5 |
240.0 |
| N |
CA |
C |
HA |
116.5 |
119.9 |
| CB |
CA |
C |
HA |
236.0 |
239.9 |
| C |
CA |
CB |
CG |
91.2 |
180.0 |
| C |
CA |
CB |
HB2 |
330.2 |
60.1 |
| C |
CA |
CB |
HB3 |
211.0 |
300.1 |
| O |
C |
CA |
OXT |
179.9 |
179.9 |
| CA |
C |
OXT |
HXT |
180.0 |
179.9 |
| HA |
CA |
N |
H |
131.2 |
293.7 |
| HA |
CA |
N |
H2 |
292.6 |
180.0 |
| N |
CA |
HA |
CB |
119.7 |
120.0 |
| N |
CA |
HA |
C |
242.9 |
240.1 |
| CB |
CA |
HA |
C |
123.2 |
120.1 |
| HA |
CA |
CB |
CG |
329.8 |
59.9 |
| HA |
CA |
CB |
HB2 |
208.8 |
300.0 |
| HA |
CA |
CB |
HB3 |
89.6 |
180.0 |
| HA |
CA |
C |
O |
96.1 |
210.0 |
| HA |
CA |
C |
OXT |
276.2 |
30.1 |
| CG |
CB |
CA |
C |
91.2 |
180.0 |
| CG |
CB |
CA |
HA |
329.8 |
59.9 |
| CA |
CB |
CG |
HB2 |
238.5 |
240.0 |
| CA |
CB |
CG |
HB3 |
120.4 |
120.1 |
| HB2 |
CB |
CG |
HB3 |
241.9 |
240.0 |
| S |
CG |
CB |
HG2 |
119.6 |
120.0 |
| S |
CG |
CB |
HG3 |
240.4 |
240.0 |
| CB |
CG |
S |
OE |
298.6 |
295.0 |
| CB |
CG |
S |
CE |
186.8 |
180.0 |
| HG2 |
CG |
CB |
HG3 |
120.7 |
120.0 |
| HB2 |
CB |
CA |
C |
330.2 |
60.1 |
| HB2 |
CB |
CA |
HA |
208.8 |
300.0 |
| CA |
CB |
HB2 |
CG |
121.1 |
120.0 |
| CA |
CB |
HB2 |
HB3 |
239.6 |
240.0 |
| CG |
CB |
HB2 |
HB3 |
118.6 |
120.0 |
| HB2 |
CB |
CG |
S |
297.9 |
300.0 |
| HB2 |
CB |
CG |
HG2 |
178.2 |
180.0 |
| HB2 |
CB |
CG |
HG3 |
57.5 |
60.0 |
| HB3 |
CB |
CA |
C |
211.0 |
300.1 |
| HB3 |
CB |
CA |
HA |
89.6 |
180.0 |
| CA |
CB |
HB3 |
CG |
239.7 |
239.9 |
| CA |
CB |
HB3 |
HB2 |
120.7 |
120.0 |
| CG |
CB |
HB3 |
HB2 |
240.9 |
240.1 |
| HB3 |
CB |
CG |
S |
55.9 |
60.0 |
| HB3 |
CB |
CG |
HG2 |
296.3 |
300.0 |
| HB3 |
CB |
CG |
HG3 |
175.5 |
180.0 |
| S |
CG |
CB |
HB2 |
297.9 |
300.0 |
| S |
CG |
CB |
HB3 |
55.9 |
60.0 |
| CB |
CG |
S |
HG2 |
239.5 |
240.0 |
| CB |
CG |
S |
HG3 |
120.4 |
120.0 |
| HG2 |
CG |
S |
HG3 |
240.9 |
240.0 |
| OE |
S |
CG |
CE |
111.7 |
114.9 |
| CG |
S |
CE |
HE1 |
302.3 |
180.0 |
| CG |
S |
CE |
HE2 |
182.3 |
300.0 |
| CG |
S |
CE |
HE3 |
62.4 |
60.0 |
| HG2 |
CG |
CB |
HB2 |
178.2 |
180.0 |
| HG2 |
CG |
CB |
HB3 |
296.3 |
300.0 |
| CB |
CG |
HG2 |
S |
119.6 |
120.0 |
| CB |
CG |
HG2 |
HG3 |
238.6 |
240.0 |
| S |
CG |
HG2 |
HG3 |
119.0 |
120.0 |
| HG2 |
CG |
S |
OE |
59.0 |
55.0 |
| HG2 |
CG |
S |
CE |
307.3 |
300.0 |
| HG3 |
CG |
CB |
HB2 |
57.5 |
60.0 |
| HG3 |
CG |
CB |
HB3 |
175.5 |
180.0 |
| CB |
CG |
HG3 |
S |
240.4 |
240.0 |
| CB |
CG |
HG3 |
HG2 |
121.4 |
120.0 |
| S |
CG |
HG3 |
HG2 |
241.0 |
240.0 |
| HG3 |
CG |
S |
OE |
178.2 |
174.9 |
| HG3 |
CG |
S |
CE |
66.4 |
60.0 |
| OE |
S |
CG |
HG2 |
59.0 |
55.0 |
| OE |
S |
CG |
HG3 |
178.2 |
174.9 |
| CG |
S |
OE |
CE |
255.2 |
251.3 |
| OE |
S |
CE |
HE1 |
190.3 |
65.1 |
| OE |
S |
CE |
HE2 |
70.4 |
185.1 |
| OE |
S |
CE |
HE3 |
310.5 |
305.1 |
| CE |
S |
CG |
HG2 |
307.3 |
300.0 |
| CE |
S |
CG |
HG3 |
66.4 |
60.0 |
| CG |
S |
CE |
OE |
111.9 |
114.9 |
| HE1 |
CE |
S |
HE2 |
120.0 |
240.0 |
| HE1 |
CE |
S |
HE3 |
239.9 |
120.0 |
| HE2 |
CE |
S |
HE3 |
119.9 |
240.0 |
| S |
CE |
HE1 |
HE2 |
240.0 |
120.0 |
| S |
CE |
HE1 |
HE3 |
120.1 |
240.1 |
| HE2 |
CE |
HE1 |
HE3 |
240.1 |
120.1 |
| S |
CE |
HE2 |
HE1 |
120.0 |
240.0 |
| S |
CE |
HE2 |
HE3 |
240.0 |
120.0 |
| HE1 |
CE |
HE2 |
HE3 |
120.0 |
239.9 |
| S |
CE |
HE3 |
HE1 |
239.9 |
119.9 |
| S |
CE |
HE3 |
HE2 |
119.9 |
240.0 |
| HE1 |
CE |
HE3 |
HE2 |
240.1 |
120.1 |
| O |
C |
CA |
HA |
96.1 |
210.0 |
| CA |
C |
O |
OXT |
180.1 |
180.1 |
| O |
C |
OXT |
HXT |
0.2 |
0.0 |
| OXT |
C |
CA |
HA |
276.2 |
30.1 |
| CA |
C |
OXT |
O |
179.9 |
179.9 |