PDB Chemical Component SMD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SMD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O12	C12	1.432	1.429
O12	H5	0.950	0.967
C12	C13	1.501	1.532
C12	C11	1.500	1.530
C12	H12	1.115	1.090
C13	O13	1.456	1.429
C13	C14	1.510	1.534
C13	H13	1.115	1.090
O13	H4	0.950	0.967
C14	O14	1.448	1.428
C14	C15	1.523	1.531
C14	H14	1.115	1.090
O14	H3	0.950	0.967
C15	C16	1.529	1.529
C15	O15	1.442	1.426
C15	H15	1.114	1.090
C16	O16	1.411	1.429
C16	H161	1.115	1.091
C16	H162	1.116	1.090
O16	H16	0.950	0.967
O15	C11	1.449	1.427
C11	S22	1.830	1.814
C11	H11	1.115	1.089
S22	C22	1.813	1.814
C22	C21	1.510	1.530
C22	C23	1.539	1.531
C22	H22	1.115	1.090
C21	O21	1.428	1.429
C21	O25	1.421	1.426
C21	H21	1.115	1.090
O21	C27	1.439	1.429
C27	H271	1.115	1.090
C27	H272	1.115	1.090
C27	H273	1.115	1.090
O25	C25	1.445	1.426
C23	O23	1.422	1.429
C23	C24	1.537	1.533
C23	H23	1.115	1.091
O23	H2	0.950	0.968
C24	O24	1.447	1.430
C24	C25	1.515	1.530
C24	H24	1.115	1.090
O24	H1	0.950	0.967
C25	C26	1.512	1.530
C25	H25	1.115	1.090
C26	O26	1.431	1.429
C26	H261	1.115	1.090
C26	H262	1.115	1.090
O26	H26	0.950	0.967

Bond Angles for SMD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O12	C12	H12	112.7	109.5
C13	C12	H12	107.1	109.6
C12	C13	O13	110.6	109.8
C12	C13	C14	111.9	108.6
C12	C13	H13	106.6	109.6
C12	C11	H11	111.1	109.4
C14	C13	O13	107.8	109.6
O13	C13	H13	110.7	109.6
C13	O13	H4	110.6	106.8
C14	C13	H13	109.4	109.5
C13	C14	O14	109.4	109.6
C13	C14	C15	109.5	108.9
C13	C14	H14	111.3	109.5
C15	C14	O14	114.1	109.6
O14	C14	H14	106.3	109.6
C14	O14	H3	109.4	106.8
C15	C14	H14	106.2	109.6
C14	C15	C16	109.0	109.4
C14	C15	O15	114.4	109.8
C14	C15	H15	105.4	109.4
C16	C15	O15	105.8	109.4
C16	C15	H15	114.0	109.4
C15	C16	O16	111.6	109.5
C15	C16	H161	111.4	109.5
C15	C16	H162	111.4	109.5
O15	C15	H15	108.6	109.4
O16	C16	H161	111.4	109.5
O16	C16	H162	111.4	109.4
C16	O16	H16	111.6	106.8
H161	C16	H162	99.0	109.4
O15	C11	H11	101.8	109.4
S22	C22	C21	110.5	109.6
S22	C22	C23	113.4	109.5
S22	C22	H22	105.8	109.6
C21	C22	C23	108.7	109.1
C21	C22	H22	110.8	109.5
C22	C21	O21	106.8	109.4
C22	C21	O25	110.4	109.8
C22	C21	H21	111.5	109.4
C23	C22	H22	107.7	109.5
C22	C23	O23	108.3	109.8
C22	C23	C24	112.1	108.6
C22	C23	H23	109.2	109.6
O21	C21	O25	111.8	109.4
O21	C21	H21	110.0	109.4
C21	O21	C27	114.0	106.8
O25	C21	H21	106.4	109.4
C21	O25	C25	115.8	107.6
O21	C27	H271	110.5	109.5
O21	C27	H272	114.0	109.5
O21	C27	H273	110.5	109.5
H271	C27	H272	110.5	109.5
H271	C27	H273	99.7	109.5
H272	C27	H273	110.6	109.5
O25	C25	C24	111.1	109.8
O25	C25	C26	107.9	109.4
O25	C25	H25	109.3	109.4
O23	C23	C24	111.7	109.6
O23	C23	H23	109.7	109.6
C23	O23	H2	108.3	106.8
C24	C23	H23	105.7	109.6
C23	C24	O24	109.7	109.6
C23	C24	C25	111.2	109.0
C23	C24	H24	107.5	109.5
O24	C24	C25	107.2	109.5
O24	C24	H24	111.4	109.5
C24	O24	H1	109.6	106.8
C25	C24	H24	109.9	109.6
C24	C25	C26	109.1	109.4
C24	C25	H25	108.1	109.4
C26	C25	H25	111.4	109.4
C25	C26	O26	109.2	109.5
C25	C26	H261	112.3	109.5
C25	C26	H262	112.3	109.5
O26	C26	H261	112.3	109.5
O26	C26	H262	112.3	109.5
C26	O26	H26	109.3	106.8
H261	C26	H262	98.1	109.4

Torsion Angles for SMD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C13	C12	O12	H12	118.0	120.2
O12	C12	C13	O13	46.9	53.8
O12	C12	C13	H13	286.6	293.4
O12	C12	C11	H11	357.4	298.8
H5	O12	C12	H12	62.0	59.8
O12	C12	C13	H12	238.4	239.8
C13	C12	C11	H11	118.1	58.7
C14	C13	C12	O13	120.2	119.9
O13	C13	C12	H13	120.4	120.5
C12	C13	O13	H4	180.0	299.2
C14	C13	C12	H13	240.5	240.3
C12	C13	C14	O14	66.2	66.1
C12	C13	C14	C15	300.5	306.2
C12	C13	C14	H14	183.4	186.4
O15	C11	C12	H11	246.5	240.0
H12	C12	C13	O13	168.5	174.0
H12	C12	C13	C14	288.7	293.9
H12	C12	C13	H13	48.1	53.5
H12	C12	C11	H11	235.9	178.6
O13	C13	C12	H12	168.5	174.0
C12	C13	O13	C14	122.6	119.3
C12	C13	O13	H13	242.1	239.5
C14	C13	O13	H13	119.6	120.3
O13	C13	C14	O14	188.0	186.1
O13	C13	C14	C15	62.3	66.2
O13	C13	C14	H14	305.2	306.4
C14	C13	C12	H12	288.7	293.9
C12	C13	C14	O13	238.2	240.0
C12	C13	C14	H13	117.8	119.7
O13	C13	C14	H13	239.6	239.7
C14	C13	O13	H4	57.4	180.0
C15	C14	C13	O14	234.2	240.1
O14	C14	C13	H14	242.8	239.7
C13	C14	O14	H3	180.0	60.5
C15	C14	C13	H14	117.1	119.8
C13	C14	C15	C16	264.4	301.2
C13	C14	C15	O15	22.5	61.3
C13	C14	C15	H15	141.7	181.3
H13	C13	C12	H12	48.1	53.5
C12	C13	H13	O13	120.3	120.6
C12	C13	H13	C14	238.9	240.9
C14	C13	H13	O13	241.4	239.7
H13	C13	O13	H4	297.9	59.7
H13	C13	C14	O14	308.4	306.4
H13	C13	C14	C15	182.7	186.5
H13	C13	C14	H14	65.6	66.7
H4	O13	C13	H13	297.9	59.7
O14	C14	C13	O13	188.0	186.1
O14	C14	C13	H13	308.4	306.4
C13	C14	O14	C15	236.9	240.5
C13	C14	O14	H14	120.2	120.2
C15	C14	O14	H14	243.3	239.7
O14	C14	C15	C16	141.4	181.3
O14	C14	C15	O15	259.6	301.4
O14	C14	C15	H15	18.7	61.4
C15	C14	C13	O13	62.3	66.2
C15	C14	C13	H13	182.7	186.5
C13	C14	C15	O14	123.0	119.9
C13	C14	C15	H14	239.8	240.2
O14	C14	C15	H14	116.8	120.3
C15	C14	O14	H3	303.1	180.0
C16	C15	C14	O15	241.9	239.9
C16	C15	C14	H15	122.7	119.8
C14	C15	C16	O16	176.8	183.7
C14	C15	C16	H161	51.5	303.7
C14	C15	C16	H162	302.1	63.7
O15	C15	C14	H15	240.8	239.9
H14	C14	C13	O13	305.2	306.4
H14	C14	C13	H13	65.6	66.7
C13	C14	H14	O14	241.0	239.7
C13	C14	H14	C15	119.1	119.5
C15	C14	H14	O14	121.9	120.3
H14	C14	O14	H3	59.8	300.3
H14	C14	C15	C16	24.6	61.0
H14	C14	C15	O15	142.8	181.1
H14	C14	C15	H15	261.9	301.1
H3	O14	C14	H14	59.8	300.3
C16	C15	C14	O14	141.4	181.3
C16	C15	C14	H14	24.6	61.0
C14	C15	C16	O15	123.4	120.3
C14	C15	C16	H15	242.6	240.2
O15	C15	C16	H15	119.2	119.9
O16	C16	C15	H161	125.3	240.0
O16	C16	C15	H162	234.7	120.0
C15	C16	O16	H16	180.0	180.0
H161	C16	C15	H162	109.5	240.0
O15	C15	C14	O14	259.6	301.4
O15	C15	C14	H14	142.8	181.1
C14	C15	O15	C16	240.1	239.9
C14	C15	O15	H15	117.3	120.0
C16	C15	O15	H15	237.3	240.1
O15	C15	C16	O16	53.4	63.3
O15	C15	C16	H161	288.1	183.4
O15	C15	C16	H162	178.7	303.3
C15	O15	C11	H11	196.5	307.5
H15	C15	C14	O14	18.7	61.4
H15	C15	C14	H14	261.9	301.1
C14	C15	H15	C16	119.4	119.8
C14	C15	H15	O15	237.1	239.7
C16	C15	H15	O15	117.6	119.9
H15	C15	C16	O16	294.2	303.5
H15	C15	C16	H161	168.9	63.5
H15	C15	C16	H162	59.4	183.5
O16	C16	C15	O15	53.4	63.3
O16	C16	C15	H15	294.2	303.5
C15	C16	O16	H161	234.7	120.1
C15	C16	O16	H162	125.3	240.0
H161	C16	O16	H162	250.5	119.9
H161	C16	C15	O15	288.1	183.4
H161	C16	C15	H15	168.9	63.5
C15	C16	H161	O16	125.4	240.0
C15	C16	H161	H162	242.7	120.0
O16	C16	H161	H162	117.3	240.1
H161	C16	O16	H16	305.3	60.0
H162	C16	C15	O15	178.7	303.3
H162	C16	C15	H15	59.4	183.5
C15	C16	H162	O16	234.6	120.0
C15	C16	H162	H161	117.3	240.0
O16	C16	H162	H161	242.7	119.9
H162	C16	O16	H16	54.8	300.0
H16	O16	C16	H161	305.3	60.0
H16	O16	C16	H162	54.8	300.0
C12	C11	O15	H11	119.0	120.1
C11	S22	C22	H22	321.6	54.8
C21	C22	S22	C23	122.3	119.7
C21	C22	S22	H22	240.1	239.8
S22	C22	C21	O21	170.4	181.3
S22	C22	C21	O25	292.2	301.4
S22	C22	C21	H21	50.2	61.4
C23	C22	S22	H22	117.8	120.2
S22	C22	C23	O23	306.0	306.4
S22	C22	C23	C24	69.7	66.3
S22	C22	C23	H23	186.5	186.0
S22	C22	C21	C23	234.9	240.1
S22	C22	C21	H22	116.9	120.2
C23	C22	C21	H22	241.9	240.1
C21	C22	C23	O23	182.7	186.4
C21	C22	C23	C24	306.4	306.3
C21	C22	C23	H23	63.2	66.0
O21	C21	C22	O25	238.3	239.9
O21	C21	C22	H21	120.2	119.8
C22	C21	O21	C27	191.3	190.2
O25	C21	C22	H21	242.0	239.9
C22	C21	O25	C25	299.2	292.4
S22	C22	C23	C21	123.3	120.0
S22	C22	C23	H22	243.3	239.8
C21	C22	C23	H22	120.0	119.8
C23	C22	C21	O21	295.5	301.2
C23	C22	C21	O25	57.2	61.3
C23	C22	C21	H21	175.3	181.4
O23	C23	C22	C24	236.3	240.2
O23	C23	C22	H23	119.5	120.5
C22	C23	O23	H2	180.0	179.2
C24	C23	C22	H23	243.2	240.3
C22	C23	C24	O24	168.4	173.6
C22	C23	C24	C25	50.0	53.7
C22	C23	C24	H24	289.7	293.8
S22	C22	H22	C21	240.3	239.8
S22	C22	H22	C23	121.6	120.2
C21	C22	H22	C23	241.3	240.4
H22	C22	C21	O21	53.6	61.1
H22	C22	C21	O25	175.3	181.2
H22	C22	C21	H21	293.3	301.2
H22	C22	C23	O23	62.7	66.6
H22	C22	C23	C24	186.3	186.4
H22	C22	C23	H23	303.2	306.2
O21	C21	C22	C23	295.5	301.2
O21	C21	C22	H22	53.6	61.1
C22	C21	O21	O25	120.8	120.3
C22	C21	O21	H21	238.8	240.2
O25	C21	O21	H21	118.0	119.8
O21	C21	O25	C25	57.9	52.5
C21	O21	C27	H271	54.7	60.0
C21	O21	C27	H272	180.0	180.0
C21	O21	C27	H273	305.3	300.0
O25	C21	C22	C23	57.2	61.3
O25	C21	C22	H22	175.3	181.2
C22	C21	O25	O21	241.3	239.9
C22	C21	O25	H21	121.1	120.1
O21	C21	O25	H21	239.8	240.2
O25	C21	O21	C27	70.4	69.8
C21	O25	C25	C24	56.0	67.6
C21	O25	C25	C26	175.5	187.6
C21	O25	C25	H25	296.7	307.5
H21	C21	C22	C23	175.3	181.4
H21	C21	C22	H22	293.3	301.2
C22	C21	H21	O21	118.3	119.9
C22	C21	H21	O25	239.6	239.7
O21	C21	H21	O25	121.3	119.9
H21	C21	O21	C27	312.4	310.0
H21	C21	O25	C25	178.1	172.4
C27	O21	C21	O25	70.4	69.8
C27	O21	C21	H21	312.4	310.0
H271	C27	O21	H272	234.8	240.0
H271	C27	O21	H273	109.5	120.0
H272	C27	O21	H273	234.7	240.0
O21	C27	H271	H272	127.2	120.0
O21	C27	H271	H273	243.6	240.0
H272	C27	H271	H273	116.4	120.0
O21	C27	H272	H271	234.8	240.0
O21	C27	H272	H273	125.3	120.0
H271	C27	H272	H273	250.5	240.0
O21	C27	H273	H271	116.4	120.0
O21	C27	H273	H272	232.8	240.0
H271	C27	H273	H272	116.4	120.0
C25	O25	C21	H21	178.1	172.4
C23	C24	C25	O25	311.3	298.8
O24	C24	C25	O25	191.5	178.8
O25	C25	C24	H24	70.2	58.6
C24	C25	O25	C26	240.5	240.0
C24	C25	O25	H25	119.3	120.1
C26	C25	O25	H25	238.7	240.1
O25	C25	C26	O26	71.1	65.0
O25	C25	C26	H261	305.9	185.0
O25	C25	C26	H262	196.4	305.0
O23	C23	C22	H22	62.7	66.6
C22	C23	O23	C24	124.0	119.2
C22	C23	O23	H23	240.8	239.5
C24	C23	O23	H23	116.9	120.3
O23	C23	C24	O24	290.2	293.5
O23	C23	C24	C25	171.8	173.6
O23	C23	C24	H24	51.5	53.7
C24	C23	C22	H22	186.3	186.4
C22	C23	C24	O23	238.2	240.1
C22	C23	C24	H23	118.9	119.7
O25	C25	C24	C23	311.3	298.8
O23	C23	C24	H23	240.7	239.7
C24	C23	O23	H2	56.0	60.0
O24	C24	C23	C25	118.4	119.9
O24	C24	C23	H24	238.7	239.8
C23	C24	O24	H1	180.0	180.4
C25	C24	C23	H24	120.3	119.9
C23	C24	C25	C26	192.5	178.7
C23	C24	C25	H25	71.3	58.9
H23	C23	C22	H22	303.2	306.2
C22	C23	H23	O23	118.6	120.6
C22	C23	H23	C24	239.2	240.9
O23	C23	H23	C24	120.6	120.3
H23	C23	O23	H2	299.2	299.7
H23	C23	C24	O24	49.5	53.9
H23	C23	C24	C25	291.1	294.0
H23	C23	C24	H24	170.8	174.1
H2	O23	C23	C24	56.0	60.0
H2	O23	C23	H23	299.2	299.7
O25	C25	C24	O24	191.5	178.8
O24	C24	C23	H23	49.5	53.9
C23	C24	O24	C25	239.2	240.4
C23	C24	O24	H24	118.9	120.2
C25	C24	O24	H24	239.7	239.8
O24	C24	C25	C26	72.7	58.7
O24	C24	C25	H25	311.4	298.9
O25	C25	C24	C26	118.8	120.1
O25	C25	C24	H25	240.0	239.9
C25	C24	C23	H23	291.1	294.0
C23	C24	C25	O24	119.9	119.9
C23	C24	C25	H24	241.1	240.1
O24	C24	C25	H24	121.3	120.2
C25	C24	O24	H1	300.8	300.0
C26	C25	C24	H25	121.3	119.8
C24	C25	C26	O26	191.9	185.3
C24	C25	C26	H261	66.7	305.3
C24	C25	C26	H262	317.2	65.3
H24	C24	C23	H23	170.8	174.1
C23	C24	H24	O24	239.8	239.8
C23	C24	H24	C25	121.1	119.6
O24	C24	H24	C25	241.3	239.8
H24	C24	O24	H1	61.1	60.2
H24	C24	C25	C26	311.4	298.5
H24	C24	C25	H25	190.2	178.7
H1	O24	C24	C25	300.8	300.0
H1	O24	C24	H24	61.1	60.2
O25	C25	C26	C24	239.2	239.7
O25	C25	C26	H25	120.0	119.9
C26	C25	C24	H24	311.4	298.5
C24	C25	C26	H25	240.7	240.2
O26	C26	C25	H261	125.3	240.0
O26	C26	C25	H262	234.7	120.0
C25	C26	O26	H26	180.0	180.0
H261	C26	C25	H262	109.5	240.0
O25	C25	H25	C24	121.1	120.3
O25	C25	H25	C26	240.9	240.1
H25	C25	C24	H24	190.2	178.7
C24	C25	H25	C26	119.8	119.8
H25	C25	C26	O26	311.2	305.1
H25	C25	C26	H261	185.9	65.1
H25	C25	C26	H262	76.5	185.1
O26	C26	C25	H25	311.2	305.1
C25	C26	O26	H261	234.7	120.0
C25	C26	O26	H262	125.3	240.0
H261	C26	O26	H262	250.6	120.0
H261	C26	C25	H25	185.9	65.1
C25	C26	H261	O26	123.6	240.0
C25	C26	H261	H262	241.8	120.0
O26	C26	H261	H262	118.2	240.0
H261	C26	O26	H26	305.3	59.9
H262	C26	C25	H25	76.5	185.1
C25	C26	H262	O26	236.4	120.0
C25	C26	H262	H261	118.2	240.0
O26	C26	H262	H261	241.8	120.0
H262	C26	O26	H26	54.7	300.0
H26	O26	C26	H261	305.3	59.9
H26	O26	C26	H262	54.7	300.0