PDB Chemical Component SMC
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SMC
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.485 |
1.469 |
| N |
H |
1.020 |
1.008 |
| N |
H2 |
1.020 |
1.008 |
| CA |
CB |
1.523 |
1.529 |
| CA |
C |
1.542 |
1.506 |
| CA |
HA |
1.115 |
1.090 |
| CB |
SG |
1.806 |
1.813 |
| CB |
HB2 |
1.116 |
1.089 |
| CB |
HB3 |
1.115 |
1.090 |
| SG |
CS |
1.807 |
1.813 |
| CS |
HCS1 |
1.115 |
1.090 |
| CS |
HCS2 |
1.116 |
1.090 |
| CS |
HCS3 |
1.115 |
1.090 |
| C |
O |
1.231 |
1.208 |
| C |
OXT |
1.301 |
1.342 |
| OXT |
HXT |
0.949 |
0.967 |
Bond Angles for SMC
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
108.8 |
106.7 |
| CA |
N |
H2 |
112.5 |
106.7 |
| N |
CA |
CB |
108.8 |
109.4 |
| N |
CA |
C |
108.2 |
109.5 |
| N |
CA |
HA |
109.4 |
109.5 |
| H |
N |
H2 |
112.5 |
106.8 |
| CB |
CA |
C |
104.9 |
109.5 |
| CB |
CA |
HA |
112.3 |
109.4 |
| CA |
CB |
SG |
102.6 |
109.5 |
| CA |
CB |
HB2 |
114.8 |
109.4 |
| CA |
CB |
HB3 |
114.9 |
109.4 |
| C |
CA |
HA |
113.0 |
109.5 |
| CA |
C |
O |
119.3 |
120.0 |
| CA |
C |
OXT |
121.6 |
120.0 |
| SG |
CB |
HB2 |
114.8 |
109.5 |
| SG |
CB |
HB3 |
114.8 |
109.5 |
| CB |
SG |
CS |
110.2 |
100.0 |
| HB2 |
CB |
HB3 |
95.6 |
109.4 |
| SG |
CS |
HCS1 |
110.2 |
109.4 |
| SG |
CS |
HCS2 |
111.9 |
109.4 |
| SG |
CS |
HCS3 |
112.0 |
109.4 |
| HCS1 |
CS |
HCS2 |
111.9 |
109.5 |
| HCS1 |
CS |
HCS3 |
111.9 |
109.5 |
| HCS2 |
CS |
HCS3 |
98.5 |
109.5 |
| O |
C |
OXT |
119.1 |
119.9 |
| C |
OXT |
HXT |
121.5 |
120.0 |
Torsion Angles for SMC
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.3 |
113.8 |
| CB |
CA |
N |
C |
246.5 |
239.9 |
| CB |
CA |
N |
HA |
123.1 |
119.9 |
| N |
CA |
CB |
SG |
262.2 |
300.1 |
| N |
CA |
CB |
HB2 |
27.5 |
180.0 |
| N |
CA |
CB |
HB3 |
137.0 |
60.1 |
| C |
CA |
N |
HA |
236.5 |
240.0 |
| N |
CA |
C |
O |
259.0 |
330.0 |
| N |
CA |
C |
OXT |
78.6 |
150.1 |
| CA |
N |
H |
H2 |
234.7 |
246.2 |
| H |
N |
CA |
CB |
180.0 |
53.8 |
| H |
N |
CA |
C |
293.5 |
173.8 |
| H |
N |
CA |
HA |
56.9 |
293.9 |
| CA |
N |
H2 |
H |
123.3 |
113.8 |
| H2 |
N |
CA |
CB |
54.7 |
299.9 |
| H2 |
N |
CA |
C |
168.1 |
60.0 |
| H2 |
N |
CA |
HA |
291.6 |
180.0 |
| CB |
CA |
N |
H |
180.0 |
53.8 |
| CB |
CA |
N |
H2 |
54.7 |
299.9 |
| N |
CA |
CB |
C |
115.6 |
120.0 |
| N |
CA |
CB |
HA |
238.7 |
240.1 |
| C |
CA |
CB |
HA |
123.2 |
120.0 |
| CB |
CA |
C |
O |
15.0 |
90.0 |
| CB |
CA |
C |
OXT |
194.6 |
270.1 |
| SG |
CB |
CA |
HB2 |
234.8 |
120.1 |
| SG |
CB |
CA |
HB3 |
125.3 |
240.0 |
| CA |
CB |
SG |
CS |
204.5 |
180.0 |
| HB2 |
CB |
CA |
HB3 |
250.5 |
119.9 |
| C |
CA |
N |
H |
293.5 |
173.8 |
| C |
CA |
N |
H2 |
168.1 |
60.0 |
| N |
CA |
C |
CB |
244.0 |
240.0 |
| N |
CA |
C |
HA |
121.3 |
120.0 |
| CB |
CA |
C |
HA |
237.3 |
240.0 |
| C |
CA |
CB |
SG |
146.7 |
180.0 |
| C |
CA |
CB |
HB2 |
271.9 |
59.9 |
| C |
CA |
CB |
HB3 |
21.4 |
300.0 |
| O |
C |
CA |
OXT |
180.4 |
179.9 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| HA |
CA |
N |
H |
56.9 |
293.9 |
| HA |
CA |
N |
H2 |
291.6 |
180.0 |
| N |
CA |
HA |
CB |
120.9 |
119.9 |
| N |
CA |
HA |
C |
239.4 |
240.0 |
| CB |
CA |
HA |
C |
118.5 |
120.0 |
| HA |
CA |
CB |
SG |
23.5 |
60.0 |
| HA |
CA |
CB |
HB2 |
148.7 |
299.9 |
| HA |
CA |
CB |
HB3 |
258.2 |
180.0 |
| HA |
CA |
C |
O |
137.7 |
210.0 |
| HA |
CA |
C |
OXT |
317.3 |
30.1 |
| SG |
CB |
CA |
C |
146.7 |
180.0 |
| SG |
CB |
CA |
HA |
23.5 |
60.0 |
| CA |
CB |
SG |
HB2 |
125.3 |
240.0 |
| CA |
CB |
SG |
HB3 |
234.7 |
120.0 |
| HB2 |
CB |
SG |
HB3 |
109.4 |
240.0 |
| CB |
SG |
CS |
HCS1 |
180.0 |
180.0 |
| CB |
SG |
CS |
HCS2 |
305.2 |
300.0 |
| CB |
SG |
CS |
HCS3 |
54.7 |
60.0 |
| HB2 |
CB |
CA |
C |
271.9 |
59.9 |
| HB2 |
CB |
CA |
HA |
148.7 |
299.9 |
| CA |
CB |
HB2 |
SG |
241.4 |
120.1 |
| CA |
CB |
HB2 |
HB3 |
120.7 |
240.1 |
| SG |
CB |
HB2 |
HB3 |
239.4 |
120.0 |
| HB2 |
CB |
SG |
CS |
79.2 |
300.0 |
| HB3 |
CB |
CA |
C |
21.4 |
300.0 |
| HB3 |
CB |
CA |
HA |
258.2 |
180.0 |
| CA |
CB |
HB3 |
SG |
118.7 |
240.0 |
| CA |
CB |
HB3 |
HB2 |
239.3 |
119.9 |
| SG |
CB |
HB3 |
HB2 |
120.6 |
240.0 |
| HB3 |
CB |
SG |
CS |
329.8 |
60.0 |
| CS |
SG |
CB |
HB2 |
79.2 |
300.0 |
| CS |
SG |
CB |
HB3 |
329.8 |
60.0 |
| HCS1 |
CS |
SG |
HCS2 |
234.8 |
240.0 |
| HCS1 |
CS |
SG |
HCS3 |
125.3 |
120.0 |
| HCS2 |
CS |
SG |
HCS3 |
250.5 |
240.0 |
| SG |
CS |
HCS1 |
HCS2 |
125.2 |
120.0 |
| SG |
CS |
HCS1 |
HCS3 |
234.7 |
240.0 |
| HCS2 |
CS |
HCS1 |
HCS3 |
109.5 |
120.1 |
| SG |
CS |
HCS2 |
HCS1 |
235.7 |
240.0 |
| SG |
CS |
HCS2 |
HCS3 |
117.9 |
120.0 |
| HCS1 |
CS |
HCS2 |
HCS3 |
242.1 |
239.9 |
| SG |
CS |
HCS3 |
HCS1 |
124.3 |
120.0 |
| SG |
CS |
HCS3 |
HCS2 |
242.2 |
240.0 |
| HCS1 |
CS |
HCS3 |
HCS2 |
117.8 |
120.1 |
| O |
C |
CA |
HA |
137.7 |
210.0 |
| CA |
C |
O |
OXT |
179.6 |
180.1 |
| O |
C |
OXT |
HXT |
359.6 |
0.1 |
| OXT |
C |
CA |
HA |
317.3 |
30.1 |
| CA |
C |
OXT |
O |
180.4 |
179.9 |