PDB Chemical Component SMB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SMB
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.556 |
1.530 |
| C1 |
H11 |
1.100 |
1.090 |
| C1 |
H12 |
1.100 |
1.090 |
| C1 |
H13 |
1.100 |
1.090 |
| C2 |
C3 |
1.580 |
1.530 |
| C2 |
H21 |
1.100 |
1.090 |
| C2 |
H22 |
1.100 |
1.090 |
| C3 |
C4 |
1.571 |
1.530 |
| C3 |
C5 |
1.553 |
1.507 |
| C3 |
H3 |
1.100 |
1.090 |
| C4 |
H41 |
1.100 |
1.089 |
| C4 |
H42 |
1.099 |
1.090 |
| C4 |
H43 |
1.100 |
1.090 |
| C5 |
O1 |
1.386 |
1.343 |
| C5 |
O2 |
1.228 |
1.208 |
| O1 |
HO1 |
0.950 |
0.967 |
Bond Angles for SMB
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
H11 |
109.5 |
109.5 |
| C2 |
C1 |
H12 |
109.4 |
109.4 |
| C2 |
C1 |
H13 |
109.5 |
109.5 |
| C1 |
C2 |
C3 |
120.3 |
109.5 |
| C1 |
C2 |
H21 |
106.0 |
109.5 |
| C1 |
C2 |
H22 |
103.5 |
109.5 |
| H11 |
C1 |
H12 |
109.4 |
109.5 |
| H11 |
C1 |
H13 |
109.5 |
109.5 |
| H12 |
C1 |
H13 |
109.5 |
109.5 |
| C3 |
C2 |
H21 |
106.0 |
109.5 |
| C3 |
C2 |
H22 |
103.4 |
109.5 |
| C2 |
C3 |
C4 |
112.6 |
109.5 |
| C2 |
C3 |
C5 |
113.0 |
109.5 |
| C2 |
C3 |
H3 |
104.9 |
109.5 |
| H21 |
C2 |
H22 |
118.4 |
109.4 |
| C4 |
C3 |
C5 |
110.1 |
109.5 |
| C4 |
C3 |
H3 |
108.1 |
109.5 |
| C3 |
C4 |
H41 |
109.5 |
109.4 |
| C3 |
C4 |
H42 |
109.5 |
109.4 |
| C3 |
C4 |
H43 |
109.4 |
109.4 |
| C5 |
C3 |
H3 |
107.7 |
109.5 |
| C3 |
C5 |
O1 |
112.4 |
120.0 |
| C3 |
C5 |
O2 |
123.3 |
120.0 |
| H41 |
C4 |
H42 |
109.5 |
109.5 |
| H41 |
C4 |
H43 |
109.5 |
109.5 |
| H42 |
C4 |
H43 |
109.5 |
109.5 |
| O1 |
C5 |
O2 |
124.3 |
120.0 |
| C5 |
O1 |
HO1 |
109.5 |
117.0 |
Torsion Angles for SMB
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H11 |
C1 |
C2 |
H12 |
240.0 |
240.0 |
| H11 |
C1 |
C2 |
H13 |
120.0 |
120.0 |
| H12 |
C1 |
C2 |
H13 |
240.0 |
240.0 |
| C3 |
C2 |
C1 |
H21 |
240.0 |
240.0 |
| C3 |
C2 |
C1 |
H22 |
114.7 |
120.0 |
| C1 |
C2 |
C3 |
C4 |
359.8 |
295.0 |
| C1 |
C2 |
C3 |
C5 |
234.2 |
175.0 |
| C1 |
C2 |
C3 |
H3 |
117.2 |
55.0 |
| H21 |
C2 |
C1 |
H22 |
234.7 |
240.0 |
| C2 |
C1 |
H11 |
H12 |
120.0 |
120.0 |
| C2 |
C1 |
H11 |
H13 |
240.0 |
240.0 |
| H11 |
C1 |
C2 |
C3 |
17.1 |
300.0 |
| H11 |
C1 |
C2 |
H21 |
137.1 |
60.0 |
| H11 |
C1 |
C2 |
H22 |
262.4 |
180.0 |
| H12 |
C1 |
H11 |
H13 |
120.0 |
120.0 |
| C2 |
C1 |
H12 |
H11 |
240.0 |
240.0 |
| C2 |
C1 |
H12 |
H13 |
120.0 |
120.0 |
| H12 |
C1 |
C2 |
C3 |
137.0 |
60.0 |
| H12 |
C1 |
C2 |
H21 |
257.0 |
180.0 |
| H12 |
C1 |
C2 |
H22 |
22.4 |
300.0 |
| H11 |
C1 |
H12 |
H13 |
240.0 |
240.0 |
| C2 |
C1 |
H13 |
H11 |
120.0 |
120.0 |
| C2 |
C1 |
H13 |
H12 |
240.0 |
240.0 |
| H13 |
C1 |
C2 |
C3 |
257.0 |
180.0 |
| H13 |
C1 |
C2 |
H21 |
17.1 |
300.0 |
| H13 |
C1 |
C2 |
H22 |
142.4 |
60.0 |
| H11 |
C1 |
H13 |
H12 |
120.0 |
120.0 |
| C3 |
C2 |
C1 |
H11 |
17.1 |
300.0 |
| C3 |
C2 |
C1 |
H12 |
137.0 |
60.0 |
| C3 |
C2 |
C1 |
H13 |
257.0 |
180.0 |
| C1 |
C2 |
C3 |
H21 |
120.0 |
120.0 |
| C1 |
C2 |
C3 |
H22 |
245.3 |
240.0 |
| H21 |
C2 |
C3 |
H22 |
125.3 |
120.0 |
| C4 |
C3 |
C2 |
C5 |
125.6 |
120.0 |
| C4 |
C3 |
C2 |
H3 |
242.6 |
240.0 |
| C2 |
C3 |
C4 |
H41 |
205.6 |
300.0 |
| C2 |
C3 |
C4 |
H42 |
325.6 |
60.0 |
| C2 |
C3 |
C4 |
H43 |
85.6 |
180.0 |
| C5 |
C3 |
C2 |
H3 |
117.0 |
120.0 |
| C2 |
C3 |
C5 |
O1 |
212.3 |
180.0 |
| C2 |
C3 |
C5 |
O2 |
32.3 |
0.1 |
| H21 |
C2 |
C1 |
H11 |
137.1 |
60.0 |
| H21 |
C2 |
C1 |
H12 |
257.0 |
180.0 |
| H21 |
C2 |
C1 |
H13 |
17.1 |
300.0 |
| C1 |
C2 |
H21 |
C3 |
231.0 |
240.0 |
| C1 |
C2 |
H21 |
H22 |
115.5 |
120.0 |
| C3 |
C2 |
H21 |
H22 |
244.5 |
240.0 |
| H21 |
C2 |
C3 |
C4 |
239.8 |
175.0 |
| H21 |
C2 |
C3 |
C5 |
114.2 |
54.9 |
| H21 |
C2 |
C3 |
H3 |
357.2 |
295.0 |
| H22 |
C2 |
C1 |
H11 |
262.4 |
180.0 |
| H22 |
C2 |
C1 |
H12 |
22.4 |
300.0 |
| H22 |
C2 |
C1 |
H13 |
142.4 |
60.0 |
| C1 |
C2 |
H22 |
C3 |
126.2 |
120.0 |
| C1 |
C2 |
H22 |
H21 |
243.1 |
240.0 |
| C3 |
C2 |
H22 |
H21 |
116.9 |
120.0 |
| H22 |
C2 |
C3 |
C4 |
114.5 |
55.0 |
| H22 |
C2 |
C3 |
C5 |
348.9 |
295.0 |
| H22 |
C2 |
C3 |
H3 |
231.9 |
175.0 |
| C4 |
C3 |
C2 |
H21 |
239.8 |
175.0 |
| C4 |
C3 |
C2 |
H22 |
114.5 |
55.0 |
| C2 |
C3 |
C4 |
C5 |
232.8 |
240.0 |
| C2 |
C3 |
C4 |
H3 |
115.4 |
120.0 |
| C5 |
C3 |
C4 |
H3 |
242.6 |
240.0 |
| C4 |
C3 |
C5 |
O1 |
85.3 |
60.0 |
| C4 |
C3 |
C5 |
O2 |
265.4 |
240.0 |
| H41 |
C4 |
C3 |
H42 |
240.0 |
240.0 |
| H41 |
C4 |
C3 |
H43 |
120.0 |
120.0 |
| H42 |
C4 |
C3 |
H43 |
240.0 |
240.0 |
| C5 |
C3 |
C2 |
H21 |
114.2 |
54.9 |
| C5 |
C3 |
C2 |
H22 |
348.9 |
295.0 |
| C2 |
C3 |
C5 |
C4 |
126.9 |
120.0 |
| C2 |
C3 |
C5 |
H3 |
244.6 |
240.0 |
| C4 |
C3 |
C5 |
H3 |
117.7 |
120.0 |
| C5 |
C3 |
C4 |
H41 |
332.8 |
60.0 |
| C5 |
C3 |
C4 |
H42 |
92.8 |
180.0 |
| C5 |
C3 |
C4 |
H43 |
212.8 |
300.0 |
| O1 |
C5 |
C3 |
O2 |
179.9 |
179.9 |
| C3 |
C5 |
O1 |
HO1 |
180.0 |
180.0 |
| H3 |
C3 |
C2 |
H21 |
357.2 |
295.0 |
| H3 |
C3 |
C2 |
H22 |
231.9 |
175.0 |
| C2 |
C3 |
H3 |
C4 |
239.6 |
240.0 |
| C2 |
C3 |
H3 |
C5 |
120.7 |
120.0 |
| C4 |
C3 |
H3 |
C5 |
241.1 |
240.0 |
| H3 |
C3 |
C4 |
H41 |
90.2 |
180.0 |
| H3 |
C3 |
C4 |
H42 |
210.2 |
300.0 |
| H3 |
C3 |
C4 |
H43 |
330.2 |
60.0 |
| H3 |
C3 |
C5 |
O1 |
327.7 |
300.0 |
| H3 |
C3 |
C5 |
O2 |
147.7 |
120.0 |
| H41 |
C4 |
C3 |
C5 |
332.8 |
60.0 |
| H41 |
C4 |
C3 |
H3 |
90.2 |
180.0 |
| C3 |
C4 |
H41 |
H42 |
120.0 |
119.9 |
| C3 |
C4 |
H41 |
H43 |
240.0 |
240.0 |
| H42 |
C4 |
H41 |
H43 |
120.0 |
120.1 |
| H42 |
C4 |
C3 |
C5 |
92.8 |
180.0 |
| H42 |
C4 |
C3 |
H3 |
210.2 |
300.0 |
| C3 |
C4 |
H42 |
H41 |
240.0 |
240.1 |
| C3 |
C4 |
H42 |
H43 |
120.0 |
119.9 |
| H41 |
C4 |
H42 |
H43 |
240.0 |
239.9 |
| H43 |
C4 |
C3 |
C5 |
212.8 |
300.0 |
| H43 |
C4 |
C3 |
H3 |
330.2 |
60.0 |
| C3 |
C4 |
H43 |
H41 |
120.0 |
120.0 |
| C3 |
C4 |
H43 |
H42 |
240.0 |
240.1 |
| H41 |
C4 |
H43 |
H42 |
120.0 |
120.1 |
| O1 |
C5 |
C3 |
H3 |
327.7 |
300.0 |
| C3 |
C5 |
O1 |
O2 |
180.1 |
180.1 |
| O2 |
C5 |
C3 |
H3 |
147.7 |
120.0 |
| C3 |
C5 |
O2 |
O1 |
179.9 |
179.9 |
| O2 |
C5 |
O1 |
HO1 |
360.0 |
360.0 |
| HO1 |
O1 |
C5 |
O2 |
360.0 |
360.0 |