PDB Chemical Component SMA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SMA

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C7M O7 1.444 1.429
O7 C7 1.398 1.358
O8 C8 1.382 1.361
C7 C8 1.467 1.389
C7 C6 1.417 1.391
C8 C8A 1.422 1.389
C6 C5 1.429 1.382
C8A O1 1.381 1.350
C8A C4A 1.421 1.406
O1 C2 1.388 1.337
C22 C11 1.515 1.530
C9 C2 1.513 1.508
C9 C10 1.513 1.529
C5 C4A 1.443 1.400
C5 O5 1.369 1.358
C4A C4 1.478 1.473
C2 C3 1.370 1.344
C5M O5 1.424 1.429
C3 C4 1.487 1.421
C3 C3M 1.481 1.507
C4 O4 1.238 1.220
C11 C10 1.528 1.530
C11 C12 1.558 1.529
C24 C13 1.534 1.530
C12 C13 1.564 1.530
C12 O12 1.449 1.429
C13 C14 1.553 1.530
O12 C23 1.426 1.429
O14 C25 1.412 1.430
O14 C14 1.419 1.429
C14 C15 1.466 1.507
C15 C16 1.333 1.333
C16 C17 1.446 1.465
C17 C18 1.353 1.349
C18 C19 1.456 1.464
C20 C19 1.343 1.333
C20 C21 1.471 1.507
C19 C26 1.493 1.507
C3M H1 1.101 1.090
C3M H2 1.100 1.089
C3M H3 1.100 1.090
C5M H4 1.100 1.090
C5M H5 1.100 1.090
C5M H6 1.100 1.090
C6 H7 1.080 1.081
C7M H8 1.100 1.090
C7M H9 1.100 1.090
C7M H10 1.100 1.090
C9 H11 1.100 1.090
C9 H12 1.100 1.090
C10 H13 1.100 1.091
C10 H14 1.100 1.090
C11 H15 1.100 1.090
C12 H16 1.100 1.090
C13 H17 1.100 1.090
C14 H18 1.100 1.090
C15 H19 1.080 1.079
C16 H21 1.080 1.079
C17 H22 1.079 1.080
C18 H23 1.080 1.080
C20 H25 1.080 1.080
C21 H26 1.100 1.090
C21 H27 1.100 1.090
C21 H28 1.100 1.090
C22 H29 1.100 1.089
C22 H30 1.100 1.090
C22 H31 1.100 1.090
C23 H32 1.100 1.090
C23 H33 1.100 1.090
C23 H34 1.100 1.090
C24 H35 1.100 1.090
C24 H36 1.100 1.090
C24 H37 1.100 1.090
C25 H38 1.100 1.090
C25 H39 1.100 1.090
C25 H40 1.100 1.090
C26 H41 1.100 1.090
C26 H42 1.100 1.090
C26 H43 1.100 1.090
O8 H44 0.950 0.967

Bond Angles for SMA

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O7 C7M H8 109.5 109.5
O7 C7M H9 109.4 109.4
O7 C7M H10 109.4 109.5
C7 C8 C8A 118.2 119.9
C7 C6 H7 119.8 119.9
C8 C8A O1 114.9 121.0
C6 C5 O5 123.7 120.2
C22 C11 H15 109.8 109.5
C10 C9 H11 106.9 109.5
C10 C9 H12 106.9 109.5
C9 C10 H13 109.2 109.5
C9 C10 H14 109.2 109.5
C5 O5 C5M 117.8 117.0
C4A C4 O4 123.1 121.4
C2 C3 C4 120.8 119.6
C2 C3 C3M 122.7 120.2
O5 C5M H4 109.5 109.5
O5 C5M H5 109.4 109.5
O5 C5M H6 109.4 109.4
C3M C3 C4 116.5 120.2
C3 C4 O4 121.5 121.4
C3 C3M H1 109.5 109.4
C3 C3M H2 109.5 109.5
C3 C3M H3 109.5 109.4
C11 C10 H13 109.2 109.4
C11 C10 H14 109.2 109.5
C11 C12 C13 113.0 109.5
C11 C12 O12 109.0 109.5
C12 C11 H15 107.7 109.5
C11 C12 H16 107.0 109.5
C24 C13 H17 108.7 109.5
C13 C12 O12 108.3 109.5
C12 C13 C14 111.9 109.4
C13 C12 H16 107.7 109.4
C12 C13 H17 107.7 109.5
C12 O12 C23 115.8 114.0
O12 C12 H16 111.8 109.5
C13 C14 C15 109.4 109.4
C14 C13 H17 107.1 109.5
C13 C14 H18 110.7 109.5
O12 C23 H32 109.5 109.5
O12 C23 H33 109.4 109.5
O12 C23 H34 109.5 109.5
O14 C25 H38 109.5 109.4
O14 C25 H39 109.5 109.5
O14 C25 H40 109.4 109.5
O14 C14 H18 109.5 109.5
C14 C15 C16 124.5 119.9
C15 C14 H18 108.3 109.5
C14 C15 H19 117.7 120.0
C15 C16 C17 123.6 120.0
C16 C15 H19 117.7 120.0
C15 C16 H21 118.2 120.0
C16 C17 C18 122.0 120.0
C17 C16 H21 118.3 120.0
C16 C17 H22 119.0 120.0
C17 C18 C19 125.3 120.0
C18 C17 H22 119.0 120.0
C17 C18 H23 117.4 120.0
C18 C19 C26 117.6 120.0
C19 C18 H23 117.3 120.0
C20 C19 C26 123.5 120.0
C21 C20 H25 117.1 120.0
C20 C21 H26 109.5 109.4
C20 C21 H27 109.5 109.5
C20 C21 H28 109.5 109.5
C19 C26 H41 109.5 109.5
C19 C26 H42 109.4 109.5
C19 C26 H43 109.4 109.5
H1 C3M H2 109.5 109.5
H1 C3M H3 109.4 109.5
H2 C3M H3 109.5 109.5
H4 C5M H5 109.5 109.5
H4 C5M H6 109.5 109.5
H5 C5M H6 109.5 109.5
H8 C7M H9 109.4 109.5
H8 C7M H10 109.5 109.5
H9 C7M H10 109.5 109.5
H11 C9 H12 111.9 109.4
H13 C10 H14 109.8 109.5
H26 C21 H27 109.5 109.5
H26 C21 H28 109.5 109.5
H27 C21 H28 109.5 109.5
H29 C22 H30 109.4 109.4
H29 C22 H31 109.5 109.5
H30 C22 H31 109.5 109.5
H32 C23 H33 109.5 109.5
H32 C23 H34 109.4 109.5
H33 C23 H34 109.5 109.5
H35 C24 H36 109.5 109.6
H35 C24 H37 109.5 109.4
H36 C24 H37 109.5 109.4
H38 C25 H39 109.5 109.5
H38 C25 H40 109.5 109.5
H39 C25 H40 109.5 109.5
H41 C26 H42 109.5 109.5
H41 C26 H43 109.5 109.4
H42 C26 H43 109.5 109.4

Torsion Angles for SMA

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H8 C7M O7 H9 240.0 240.0
H8 C7M O7 H10 120.0 120.0
H9 C7M O7 H10 240.0 240.0
O7 C7 C6 H7 0.3 359.9
C8 C7 C6 H7 180.4 180.0
C7 C8 C8A O1 179.1 179.8
C7 C6 C5 O5 180.3 180.0
C6 C5 O5 C5M 0.4 360.0
C8A C4A C4 O4 179.4 180.1
C22 C11 C10 H13 182.7 175.0
C22 C11 C10 H14 62.7 55.1
C22 C11 C12 O12 285.7 183.0
C12 C11 C22 H15 241.9 240.0
C22 C11 C12 H16 46.8 303.0
C11 C10 C9 H13 240.0 240.1
C11 C10 C9 H14 120.0 120.0
H11 C9 C10 H12 120.0 120.0
H13 C10 C9 H14 240.0 240.0
C5 C4A C4 O4 359.0 360.0
C5 O5 C5M H4 180.0 180.0
C5 O5 C5M H5 300.0 300.0
C5 O5 C5M H6 60.0 60.0
C3 C4 C4A O4 179.9 180.0
C3M C3 C2 C4 179.4 180.0
C2 C3 C4 O4 179.7 180.0
C2 C3 C3M H1 180.0 90.0
C2 C3 C3M H2 300.0 210.0
C2 C3 C3M H3 60.0 330.0
H4 C5M O5 H5 240.0 240.0
H4 C5M O5 H6 120.0 120.0
H5 C5M O5 H6 240.0 240.0
C4A C4 C3 O4 180.1 180.0
C2 C3 C4 C3M 179.4 180.0
C4 C3 C3M H1 359.4 270.0
C4 C3 C3M H2 119.4 30.0
C4 C3 C3M H3 239.4 150.0
C2 C3 C3M C4 180.6 180.0
C3M C3 C4 O4 0.3 360.0
H1 C3M C3 H2 240.0 240.0
H1 C3M C3 H3 120.0 120.0
H2 C3M C3 H3 240.0 240.0
C11 C10 C9 H11 78.5 60.0
C11 C10 C9 H12 318.5 300.0
C9 C10 C11 H13 120.0 119.9
C9 C10 C11 H14 240.0 239.9
H13 C10 C11 H14 120.0 120.0
C22 C11 C12 H15 119.4 120.0
C12 C11 C10 H13 59.9 55.0
C12 C11 C10 H14 299.9 295.1
C13 C12 C11 O12 239.6 240.0
C11 C12 C13 C14 174.8 64.7
C13 C12 C11 H16 118.4 120.0
C11 C12 C13 H17 57.4 304.7
C11 C12 O12 C23 110.4 132.6
O12 C12 C11 H16 238.9 240.0
C24 C13 C12 O12 178.0 64.7
C24 C13 C12 H16 56.9 304.7
C12 C13 C24 H17 117.9 120.0
C14 C13 C24 H17 242.5 240.0
C24 C13 C14 H18 218.5 186.6
C11 C12 C13 O12 120.9 120.0
C13 C12 C11 H15 45.9 303.0
C11 C12 C13 H16 242.0 240.0
C24 C13 C12 H17 241.5 240.0
C13 C12 O12 C23 233.8 252.6
O12 C12 C13 H16 121.1 120.0
C12 C13 C14 C15 222.9 186.5
C14 C13 C12 H17 117.4 120.0
C12 C13 C14 H18 342.2 306.6
C11 C12 O12 C13 236.7 240.0
O12 C12 C11 H15 166.3 63.0
C11 C12 O12 H16 118.1 120.0
O12 C12 C13 C14 54.0 304.7
C13 C12 O12 H16 241.4 240.0
O12 C12 C13 H17 296.5 184.7
C12 O12 C23 H32 180.0 184.2
C12 O12 C23 H33 300.0 304.2
C12 O12 C23 H34 60.0 64.2
C24 C13 C14 H17 118.5 120.1
C14 C13 C12 O12 54.0 304.7
C14 C13 C12 H16 292.9 184.7
C12 C13 C14 H17 242.2 240.0
O14 C14 C13 H18 120.0 120.0
C13 C14 C15 C16 209.4 120.0
C15 C14 C13 H18 240.7 239.9
C13 C14 C15 H19 29.5 300.0
C23 O12 C12 H16 352.3 12.6
H32 C23 O12 H33 240.0 240.0
H32 C23 O12 H34 120.0 120.0
H33 C23 O12 H34 240.0 240.0
C25 O14 C14 H18 8.9 359.9
H38 C25 O14 H39 240.0 240.0
H38 C25 O14 H40 120.0 120.0
H39 C25 O14 H40 240.0 240.0
O14 C14 C13 H17 220.0 186.5
C13 C14 O14 H18 239.2 240.0
C15 C14 O14 H18 119.3 120.1
O14 C14 C15 H19 148.7 60.0
C15 C14 C13 H17 340.7 306.5
C13 C14 C15 H18 120.7 120.0
O14 C14 C15 H18 240.0 240.0
C14 C15 C16 C17 119.5 180.0
C16 C15 C14 H19 180.0 180.0
C14 C15 C16 H21 299.5 0.0
C16 C15 C14 H18 88.7 360.0
C14 C15 C16 H19 180.0 180.0
C15 C16 C17 C18 179.8 180.0
C17 C16 C15 H21 180.0 180.0
C15 C16 C17 H22 359.8 0.1
C17 C16 C15 H19 299.5 360.0
C15 C16 C17 H21 180.0 180.0
C16 C17 C18 C19 199.5 180.0
C18 C17 C16 H22 180.0 179.9
C16 C17 C18 H23 19.5 0.0
C18 C17 C16 H21 359.8 360.0
C16 C17 C18 H22 180.0 180.1
C17 C18 C19 C26 76.2 0.1
C19 C18 C17 H23 180.0 180.0
C19 C18 C17 H22 19.5 359.9
C17 C18 C19 H23 180.0 180.0
C20 C19 C18 C26 179.9 180.0
C18 C19 C26 H41 180.0 89.9
C18 C19 C26 H42 300.0 210.0
C18 C19 C26 H43 60.0 330.0
C18 C19 C20 C26 180.1 180.0
C20 C19 C18 H23 76.1 0.0
C20 C19 C26 H41 0.1 270.0
C20 C19 C26 H42 120.2 30.0
C20 C19 C26 H43 240.1 150.0
C21 C20 C19 C26 359.9 0.0
H26 C21 C20 H27 240.0 240.0
H26 C21 C20 H28 120.0 120.0
H27 C21 C20 H28 240.0 240.0
C26 C19 C18 H23 256.2 180.0
H41 C26 C19 H42 240.0 239.9
H41 C26 C19 H43 120.0 120.0
H42 C26 C19 H43 240.0 240.0
H1 C3M C3 C4 359.4 270.0
C3 C3M H1 H2 120.0 120.0
C3 C3M H1 H3 240.0 240.1
H2 C3M H1 H3 120.0 120.0
H2 C3M C3 C4 119.4 30.0
C3 C3M H2 H1 240.0 240.0
C3 C3M H2 H3 120.0 120.0
H1 C3M H2 H3 240.0 240.0
H3 C3M C3 C4 239.4 150.0
C3 C3M H3 H1 120.0 119.9
C3 C3M H3 H2 240.0 240.0
H1 C3M H3 H2 120.0 120.1
O5 C5M H4 H5 120.0 120.0
O5 C5M H4 H6 240.0 240.0
H5 C5M H4 H6 120.1 120.0
O5 C5M H5 H4 240.0 240.0
O5 C5M H5 H6 120.0 120.0
H4 C5M H5 H6 240.0 240.0
O5 C5M H6 H4 120.0 120.0
O5 C5M H6 H5 240.0 240.0
H4 C5M H6 H5 120.0 120.0
H7 C6 C5 O5 0.2 360.0
O7 C7M H8 H9 120.0 120.0
O7 C7M H8 H10 240.0 240.0
H9 C7M H8 H10 120.0 120.0
O7 C7M H9 H8 240.0 240.0
O7 C7M H9 H10 120.0 120.0
H8 C7M H9 H10 240.0 240.0
O7 C7M H10 H8 120.0 120.0
O7 C7M H10 H9 240.0 240.0
H8 C7M H10 H9 120.0 120.0
C10 C9 H11 H12 243.3 239.9
H11 C9 C10 H13 198.5 180.0
H11 C9 C10 H14 318.5 300.0
C10 C9 H12 H11 116.7 120.0
H12 C9 C10 H13 78.5 60.0
H12 C9 C10 H14 198.5 180.0
H13 C10 C9 H11 198.5 180.0
H13 C10 C9 H12 78.5 60.0
C9 C10 H13 H14 119.6 120.1
C11 C10 H13 H14 240.3 240.0
H14 C10 C9 H11 318.5 300.0
H14 C10 C9 H12 198.5 180.0
C9 C10 H14 H13 240.4 240.0
C11 C10 H14 H13 119.7 119.9
H15 C11 C10 H13 302.0 295.0
H15 C11 C10 H14 182.0 175.0
H15 C11 C12 C13 45.9 303.0
H15 C11 C12 O12 166.3 63.0
H15 C11 C12 H16 287.4 183.0
C11 C12 H16 C13 121.8 120.0
C11 C12 H16 O12 240.7 240.0
H16 C12 C11 H15 287.4 183.0
C13 C12 H16 O12 118.9 120.0
H16 C12 C13 C14 292.9 184.7
H16 C12 C13 H17 175.4 64.7
H16 C12 O12 C23 352.3 12.6
H17 C13 C12 O12 296.5 184.7
C12 C13 H17 C14 120.5 120.0
H17 C13 C12 H16 175.4 64.7
H17 C13 C14 C15 340.7 306.5
H17 C13 C14 H18 100.0 66.5
C13 C14 H18 C15 240.0 240.0
H18 C14 C13 H17 100.0 66.5
H18 C14 C15 C16 88.7 360.0
H18 C14 C15 H19 268.7 180.0
C14 C15 H19 C16 180.0 180.0
H19 C15 C14 H18 268.7 180.0
H19 C15 C16 C17 299.5 360.0
H19 C15 C16 H21 119.5 180.0
C15 C16 H21 C17 180.0 180.0
H21 C16 C15 H19 119.5 180.0
H21 C16 C17 C18 359.8 360.0
H21 C16 C17 H22 179.8 180.0
C16 C17 H22 C18 180.0 179.9
H22 C17 C16 H21 179.8 180.0
H22 C17 C18 C19 19.5 359.9
H22 C17 C18 H23 199.5 179.9
C17 C18 H23 C19 180.0 180.0
H23 C18 C17 H22 199.5 179.9
H23 C18 C19 C26 256.2 180.0
H25 C20 C19 C26 179.9 179.9
H25 C20 C21 H26 0.0 0.1
H25 C20 C21 H27 120.0 120.0
H25 C20 C21 H28 240.0 240.1
H26 C21 C20 H25 0.0 0.1
C20 C21 H26 H27 120.0 120.0
C20 C21 H26 H28 240.0 240.0
H27 C21 H26 H28 120.0 120.0
H27 C21 C20 H25 120.0 120.0
C20 C21 H27 H26 240.0 240.0
C20 C21 H27 H28 120.0 120.0
H26 C21 H27 H28 240.0 240.0
H28 C21 C20 H25 240.0 240.1
C20 C21 H28 H26 120.1 120.0
C20 C21 H28 H27 240.0 240.0
H26 C21 H28 H27 120.0 120.0
H29 C22 C11 H15 62.5 181.5
H30 C22 H29 H31 120.0 120.0
H30 C22 C11 H15 182.5 301.5
H29 C22 H30 H31 240.0 240.0
H31 C22 C11 H15 302.5 61.5
H29 C22 H31 H30 120.0 119.9
O12 C23 H32 H33 120.0 120.0
O12 C23 H32 H34 240.0 240.0
H33 C23 H32 H34 120.0 120.0
O12 C23 H33 H32 240.0 240.0
O12 C23 H33 H34 120.0 120.0
H32 C23 H33 H34 240.0 240.0
O12 C23 H34 H32 120.0 120.0
O12 C23 H34 H33 240.0 240.0
H32 C23 H34 H33 120.0 120.0
H35 C24 C13 H17 62.1 178.6
H36 C24 H35 H37 120.0 120.0
H36 C24 C13 H17 182.1 298.7
H35 C24 H36 H37 240.0 240.1
H37 C24 C13 H17 302.1 58.7
H35 C24 H37 H36 120.0 120.0
O14 C25 H38 H39 120.0 120.0
O14 C25 H38 H40 240.0 240.0
H39 C25 H38 H40 120.0 120.0
O14 C25 H39 H38 240.0 240.1
O14 C25 H39 H40 120.0 120.0
H38 C25 H39 H40 240.0 240.0
O14 C25 H40 H38 120.0 120.0
O14 C25 H40 H39 240.0 240.0
H38 C25 H40 H39 120.0 120.0
C19 C26 H41 H42 120.0 120.1
C19 C26 H41 H43 240.0 240.0
H42 C26 H41 H43 120.0 119.9
C19 C26 H42 H41 240.0 239.9
C19 C26 H42 H43 119.9 120.0
H41 C26 H42 H43 240.0 240.1
C19 C26 H43 H41 120.0 120.0
C19 C26 H43 H42 240.0 240.0
H41 C26 H43 H42 120.0 119.9