Atom Nomenclature for SLQ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for SLQ

Atom Name (V3) Atom Name (V2)
N1 N1
O1 O1
C2 C2
N2 N2
N3 N3
C4 C4
C5 C5
C6 C6
N6 N6
N7 N7
C8 C8
C9 C9
N9 N9
C1' C1'
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C1B C1B
N1B N1B
C2' C2'
C2B C2B
C3' C3'
C3B C3B
C4' C4'
C4B C4B
C5' C5'
C5B C5B
C6' C6'
CA' CA'
HO1 HO1
HN2 HN2
HN6 HN6
H8 H8
H9 H9
H10 H10
H10A H10A
H10B H10B
H11 H11
H11A H11A
H11B H11B
H12 H12
H13 H13
H13A H13A
H14 H14
H14A H14A
H14B H14B
H15 H15
H15A H15A
H2' H2'
H2B H2B
H3' H3'
H3B H3B
H4B H4B
H5' H5'
H5B H5B
H6' H6'
HA' HA'
HA'A HA'A