PDB Chemical Component SLM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SLM

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.545 1.507
C1 O1A 1.235 1.213
C1 N1 1.357 1.347
C2 C3 1.553 1.530
C2 O2 1.424 1.430
C2 O6 1.384 1.429
C3 C4 1.519 1.531
C4 C5 1.513 1.532
C4 O4 1.442 1.429
C5 C6 1.535 1.530
C5 N5 1.484 1.466
C6 C7 1.514 1.530
C6 O6 1.430 1.429
C7 C8 1.531 1.530
C7 O7 1.420 1.429
C8 C9 1.498 1.530
C8 O8 1.448 1.429
C9 O9 1.421 1.428
C10 C11 1.535 1.506
C10 N5 1.317 1.348
C10 O10 1.227 1.213
N1 H11N 1.000 0.970
N1 H12N 1.000 0.970
C3 H32 1.100 1.090
C3 H31 1.100 1.090
O2 HO2 0.950 0.967
C4 H4 1.100 1.090
C5 H5 1.100 1.090
O4 HO4 0.950 0.966
C6 H6 1.100 1.090
N5 HN5 1.000 0.969
C7 H7 1.100 1.089
C8 H8 1.100 1.090
O7 HO7 0.950 0.968
C9 H92 1.100 1.090
C9 H91 1.100 1.091
O8 HO8 0.950 0.967
O9 HO9 0.950 0.967
C11 H111 1.100 1.090
C11 H113 1.100 1.090
C11 H112 1.100 1.090

Bond Angles for SLM

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 O1A 119.7 119.9
C2 C1 N1 115.5 120.0
C1 C2 C3 109.6 109.5
C1 C2 O2 109.0 109.5
C1 C2 O6 105.6 109.5
O1A C1 N1 124.7 120.0
C1 N1 H11N 109.2 120.0
C1 N1 H12N 125.4 120.1
C3 C2 O2 110.8 109.5
C3 C2 O6 109.3 109.4
C2 C3 C4 110.3 109.2
C2 C3 H32 109.2 109.5
C2 C3 H31 109.0 109.5
O2 C2 O6 112.4 109.5
C2 O2 HO2 109.5 114.0
C2 O6 C6 115.6 114.1
C3 C4 C5 108.2 109.0
C3 C4 O4 109.2 109.6
C4 C3 H32 109.2 109.5
C4 C3 H31 109.1 109.5
C3 C4 H4 111.6 109.5
C5 C4 O4 112.7 109.6
C4 C5 C6 107.9 109.2
C4 C5 N5 111.5 109.5
C5 C4 H4 108.1 109.5
C4 C5 H5 109.4 109.5
O4 C4 H4 107.1 109.7
C4 O4 HO4 109.5 114.0
C6 C5 N5 110.2 109.5
C5 C6 C7 115.1 109.5
C5 C6 O6 107.9 109.4
C6 C5 H5 110.8 109.6
C5 C6 H6 106.5 109.5
C5 N5 C10 123.1 120.0
N5 C5 H5 107.0 109.5
C5 N5 HN5 118.5 120.0
C7 C6 O6 108.7 109.5
C6 C7 C8 111.1 109.5
C6 C7 O7 111.3 109.5
C7 C6 H6 105.6 109.5
C6 C7 H7 106.7 109.5
O6 C6 H6 113.1 109.5
C8 C7 O7 108.4 109.5
C7 C8 C9 111.1 109.5
C7 C8 O8 110.1 109.5
C8 C7 H7 109.7 109.5
C7 C8 H8 108.4 109.5
O7 C7 H7 109.5 109.5
C7 O7 HO7 109.5 114.0
C9 C8 O8 111.1 109.5
C8 C9 O9 117.0 109.5
C9 C8 H8 107.5 109.4
C8 C9 H92 107.1 109.5
C8 C9 H91 105.3 109.4
O8 C8 H8 108.5 109.5
C8 O8 HO8 109.5 114.0
O9 C9 H92 107.0 109.5
O9 C9 H91 105.3 109.5
C9 O9 HO9 109.5 114.1
C11 C10 N5 115.2 120.0
C11 C10 O10 120.6 120.0
C10 C11 H111 109.5 109.5
C10 C11 H113 109.5 109.5
C10 C11 H112 109.5 109.5
N5 C10 O10 124.2 120.0
C10 N5 HN5 118.5 120.0
H11N N1 H12N 125.4 119.9
H32 C3 H31 110.1 109.5
H92 C9 H91 115.5 109.4
H111 C11 H113 109.5 109.5
H111 C11 H112 109.5 109.5
H113 C11 H112 109.4 109.4

Torsion Angles for SLM

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O1A C1 C2 N1 180.7 180.2
C2 C1 N1 H11N 0.3 359.9
C2 C1 N1 H12N 180.3 180.0
C3 C2 C1 O2 238.6 240.0
C3 C2 C1 O6 117.6 120.0
C1 C2 C3 C4 190.6 182.4
C1 C2 C3 H32 310.6 302.3
C1 C2 C3 H31 70.9 62.4
O2 C2 C1 O6 239.0 240.0
C1 C2 O2 HO2 126.1 60.0
C1 C2 O6 C6 176.4 181.1
C2 C1 O1A N1 179.3 179.8
O1A C1 C2 C3 257.2 125.0
O1A C1 C2 O2 18.6 245.0
O1A C1 C2 O6 139.6 5.0
O1A C1 N1 H11N 179.5 179.7
O1A C1 N1 H12N 359.6 359.8
C2 C1 N1 O1A 180.7 180.2
N1 C1 C2 C3 76.5 304.8
N1 C1 C2 O2 197.9 64.8
N1 C1 C2 O6 318.9 184.8
H11N N1 C1 H12N 180.0 180.0
C3 C2 C1 O1A 257.2 125.0
C3 C2 C1 N1 76.5 304.8
C1 C2 C3 O2 120.3 120.0
C1 C2 C3 O6 244.7 240.0
O2 C2 C3 O6 124.4 120.0
C3 C2 O2 HO2 246.8 180.0
C3 C2 O6 C6 58.6 61.1
C2 C3 C4 C5 56.6 56.9
C2 C3 C4 O4 179.6 176.8
C4 C3 C2 H32 240.0 240.1
C4 C3 C2 H31 119.7 119.9
C2 C3 C4 H4 297.8 297.1
H32 C3 C2 H31 239.7 239.9
O2 C2 C1 O1A 18.6 245.0
O2 C2 C1 N1 197.9 64.8
C1 C2 O2 C3 239.4 240.0
C1 C2 O2 O6 116.8 120.1
C3 C2 O2 O6 237.4 240.1
O2 C2 C3 C4 70.3 62.4
O2 C2 C3 H32 190.3 182.3
O2 C2 C3 H31 310.6 302.4
O2 C2 O6 C6 295.2 301.2
O6 C2 C1 O1A 139.6 5.0
O6 C2 C1 N1 318.9 184.8
C1 C2 O6 C3 117.8 120.0
C1 C2 O6 O2 241.2 240.0
C3 C2 O6 O2 123.4 120.0
O6 C2 C3 C4 305.9 302.4
O6 C2 C3 H32 65.9 62.4
O6 C2 C3 H31 186.2 182.5
O6 C2 O2 HO2 9.4 300.0
C5 C6 O6 C2 297.1 298.9
C7 C6 O6 C2 171.6 178.9
C2 O6 C6 H6 54.6 58.9
C4 C3 C2 O2 70.3 62.4
C4 C3 C2 O6 305.9 302.4
C2 C3 C4 H32 120.0 119.9
C2 C3 C4 H31 240.3 240.1
C5 C4 C3 O4 237.1 240.1
C3 C4 C5 C6 299.8 303.0
C3 C4 C5 N5 178.6 183.1
C5 C4 C3 H4 118.8 119.8
C3 C4 C5 H5 60.3 63.0
O4 C4 C3 H4 241.8 239.7
C3 C4 O4 HO4 166.0 60.1
H32 C3 C4 H31 120.3 120.1
C3 C4 C5 O4 120.8 119.9
C5 C4 C3 H32 296.6 297.0
C5 C4 C3 H31 176.3 176.9
C3 C4 C5 H4 239.0 240.2
O4 C4 C5 H4 118.1 120.3
C5 C4 O4 HO4 286.3 179.6
C6 C5 C4 N5 121.2 119.9
C4 C5 C6 C7 182.8 177.6
C4 C5 C6 O6 61.2 57.6
C6 C5 C4 H5 239.4 240.0
C4 C5 C6 H6 299.5 297.6
C4 C5 N5 C10 248.5 275.0
N5 C5 C4 H5 118.2 120.1
C4 C5 N5 HN5 68.5 95.0
C3 C4 O4 C5 239.7 240.5
O4 C4 C3 H32 59.5 56.9
O4 C4 C3 H31 299.2 296.8
C3 C4 O4 H4 121.0 120.2
O4 C4 C5 C6 178.9 183.2
O4 C4 C5 N5 57.8 63.2
C5 C4 O4 H4 241.3 239.8
O4 C4 C5 H5 299.5 303.1
C2 O6 C6 C5 297.1 298.9
C6 C5 C4 O4 178.9 183.2
C4 C5 C6 N5 238.0 240.1
C6 C5 C4 H4 60.8 62.8
C4 C5 C6 H5 119.8 119.9
C6 C5 N5 C10 128.7 155.3
N5 C5 C6 H5 241.7 239.9
C6 C5 N5 HN5 308.7 335.3
C7 C6 C5 O6 121.6 120.0
C5 C6 C7 C8 180.0 185.0
C5 C6 C7 O7 301.0 305.0
C7 C6 C5 H6 243.3 240.0
C5 C6 C7 H7 60.4 65.0
O6 C6 C5 H6 121.7 120.0
N5 C5 C4 O4 57.8 63.2
C4 C5 N5 C6 119.8 119.7
N5 C5 C4 H4 299.6 302.9
C4 C5 N5 H5 240.3 239.9
N5 C5 C6 C7 304.8 297.5
N5 C5 C6 O6 183.2 177.5
C6 C5 N5 H5 120.5 120.2
N5 C5 C6 H6 61.5 57.6
C11 C10 N5 C5 182.8 180.0
C5 N5 C10 O10 1.0 360.0
C10 N5 C5 HN5 180.0 180.0
C2 O6 C6 C7 171.6 178.9
C7 C6 C5 N5 304.8 297.5
C5 C6 C7 O6 238.8 240.0
C7 C6 C5 H5 63.1 57.7
C5 C6 C7 H6 117.2 120.0
O6 C6 C7 H6 238.3 240.0
C8 C7 C6 O7 239.0 240.0
C6 C7 C8 C9 183.2 180.0
C6 C7 C8 O8 306.7 300.0
C8 C7 C6 H7 119.6 120.0
C6 C7 C8 H8 65.3 60.0
O7 C7 C6 H7 240.5 240.0
C6 C7 O7 HO7 344.1 300.0
O6 C6 C5 N5 183.2 177.5
C5 C6 O6 C7 125.5 120.0
O6 C6 C5 H5 301.5 297.7
C5 C6 O6 H6 242.5 240.0
O6 C6 C7 C8 301.2 305.0
O6 C6 C7 O7 62.1 65.0
C7 C6 O6 H6 117.0 120.0
O6 C6 C7 H7 181.6 185.0
C8 C7 C6 O6 301.2 305.0
C6 C7 C8 O7 122.7 120.0
C8 C7 C6 H6 62.8 65.0
C6 C7 C8 H7 242.2 240.0
O7 C7 C8 H7 119.6 120.0
C8 C7 O7 HO7 106.6 60.0
C9 C8 C7 O8 236.5 240.0
C7 C8 C9 O9 63.6 185.0
C9 C8 C7 H8 117.9 119.9
C7 C8 C9 H92 183.6 305.1
C7 C8 C9 H91 307.1 65.0
O8 C8 C7 H8 241.4 239.9
C7 C8 O8 HO8 250.9 300.0
O7 C7 C6 O6 62.1 65.0
C6 C7 O7 C8 237.5 240.0
O7 C7 C6 H6 183.8 185.0
C6 C7 O7 H7 117.8 120.0
O7 C7 C8 C9 60.6 60.0
O7 C7 C8 O8 184.1 180.0
C8 C7 O7 H7 240.3 240.0
O7 C7 C8 H8 302.6 300.0
C9 C8 C7 O7 60.6 60.0
C7 C8 C9 O8 123.0 120.0
C9 C8 C7 H7 301.0 300.0
C7 C8 C9 H8 241.5 240.0
O8 C8 C9 H8 118.5 120.0
C9 C8 O8 HO8 14.4 60.0
O9 C9 C8 H92 240.0 239.9
O9 C9 C8 H91 116.5 120.0
C8 C9 O9 HO9 143.3 180.0
H92 C9 C8 H91 236.5 240.1
O8 C8 C7 O7 184.1 180.0
C7 C8 O8 C9 236.5 240.0
O8 C8 C7 H7 64.5 60.0
C7 C8 O8 H8 118.5 120.1
O8 C8 C9 O9 300.6 65.0
C9 C8 O8 H8 242.1 240.1
O8 C8 C9 H92 60.6 185.1
O8 C8 C9 H91 184.1 305.0
O9 C9 C8 O8 300.6 65.0
O9 C9 C8 H8 182.1 304.9
C8 C9 O9 H92 120.0 120.1
C8 C9 O9 H91 243.5 240.1
H92 C9 O9 H91 123.5 119.9
C5 N5 C10 C11 182.8 180.0
N5 C10 C11 O10 178.2 180.0
C11 C10 N5 HN5 2.8 0.0
H111 C11 C10 H113 240.0 240.0
H111 C11 C10 H112 120.0 120.0
H113 C11 C10 H112 240.0 240.0
C10 N5 C5 H5 8.1 35.1
C5 N5 C10 HN5 180.0 180.0
C11 C10 N5 O10 181.9 180.0
N5 C10 C11 H111 66.6 0.0
N5 C10 C11 H113 186.6 120.0
N5 C10 C11 H112 306.5 240.0
C11 C10 O10 N5 178.0 180.0
O10 C10 C11 H111 248.3 180.0
O10 C10 C11 H113 8.4 300.0
O10 C10 C11 H112 128.3 60.0
O10 C10 N5 HN5 181.0 180.0
C1 N1 H11N H12N 180.0 180.0
C1 N1 H12N H11N 180.0 180.0
H32 C3 C2 O2 190.3 182.3
H32 C3 C2 O6 65.9 62.4
C2 C3 H32 C4 239.4 240.3
C2 C3 H32 H31 119.7 120.1
H32 C3 C4 C5 296.6 297.0
H32 C3 C4 O4 59.5 56.9
C4 C3 H32 H31 240.3 239.9
H32 C3 C4 H4 177.8 177.2
H31 C3 C2 O2 310.6 302.4
H31 C3 C2 O6 186.2 182.5
C2 C3 H31 C4 120.4 119.7
C2 C3 H31 H32 240.2 239.9
H31 C3 C4 C5 176.3 176.9
H31 C3 C4 O4 299.2 296.8
C4 C3 H31 H32 119.8 120.2
H31 C3 C4 H4 57.5 57.1
HO2 O2 C2 O6 9.4 300.0
C3 C4 H4 C5 118.9 119.5
C3 C4 H4 O4 240.5 239.8
H4 C4 C3 H32 177.8 177.2
H4 C4 C3 H31 57.5 57.1
C5 C4 H4 O4 121.6 120.3
H4 C4 C5 C6 60.8 62.8
H4 C4 C5 N5 299.6 302.9
H4 C4 C5 H5 181.4 182.8
H4 C4 O4 HO4 45.0 299.8
H5 C5 C4 O4 299.5 303.1
C4 C5 H5 C6 241.2 240.2
C4 C5 H5 N5 121.0 120.1
H5 C5 C4 H4 181.4 182.8
C6 C5 H5 N5 239.8 239.8
H5 C5 C6 C7 63.1 57.7
H5 C5 C6 O6 301.5 297.7
H5 C5 C6 H6 179.8 177.7
H5 C5 N5 C10 8.1 35.1
H5 C5 N5 HN5 188.2 215.1
HO4 O4 C4 H4 45.0 299.8
H6 C6 C5 N5 61.5 57.6
C5 C6 H6 C7 237.2 240.0
C5 C6 H6 O6 118.4 119.9
H6 C6 C5 H5 179.8 177.7
C7 C6 H6 O6 241.2 240.0
H6 C6 C7 C8 62.8 65.0
H6 C6 C7 O7 183.8 185.0
H6 C6 C7 H7 303.3 305.0
C5 N5 HN5 C10 180.0 180.0
HN5 N5 C5 H5 188.2 215.1
HN5 N5 C10 O10 181.0 180.0
H7 C7 C6 O6 181.6 185.0
C6 C7 H7 C8 120.5 120.0
C6 C7 H7 O7 239.4 240.0
H7 C7 C6 H6 303.3 305.0
C8 C7 H7 O7 118.9 120.0
H7 C7 C8 C9 301.0 300.0
H7 C7 C8 O8 64.5 60.0
H7 C7 C8 H8 183.1 180.1
H7 C7 O7 HO7 226.3 179.9
H8 C8 C7 O7 302.6 300.0
C7 C8 H8 C9 120.2 120.0
C7 C8 H8 O8 240.4 239.9
H8 C8 C7 H7 183.1 180.1
C9 C8 H8 O8 120.2 120.0
H8 C8 C9 O9 182.1 304.9
H8 C8 C9 H92 302.1 65.0
H8 C8 C9 H91 65.5 185.0
H8 C8 O8 HO8 132.3 180.0
HO7 O7 C7 H7 226.3 179.9
H92 C9 C8 O8 60.6 185.1
C8 C9 H92 O9 233.8 239.9
H92 C9 C8 H8 302.1 65.0
C8 C9 H92 H91 116.9 119.9
O9 C9 H92 H91 243.1 240.0
H92 C9 O9 HO9 23.3 59.9
H91 C9 C8 O8 184.1 305.0
C8 C9 H91 O9 124.2 120.0
H91 C9 C8 H8 65.5 185.0
C8 C9 H91 H92 242.1 240.0
O9 C9 H91 H92 117.9 120.0
H91 C9 O9 HO9 259.8 300.0
HO8 O8 C8 H8 132.3 180.0
HO9 O9 C9 H92 23.3 59.9
HO9 O9 C9 H91 259.8 300.0
H111 C11 C10 N5 66.6 0.0
H111 C11 C10 O10 248.3 180.0
C10 C11 H111 H113 120.0 120.0
C10 C11 H111 H112 240.0 240.0
H113 C11 H111 H112 120.0 119.9
H113 C11 C10 N5 186.6 120.0
H113 C11 C10 O10 8.4 300.0
C10 C11 H113 H111 240.0 240.0
C10 C11 H113 H112 120.0 120.0
H111 C11 H113 H112 240.0 240.1
H112 C11 C10 N5 306.5 240.0
H112 C11 C10 O10 128.3 60.0
C10 C11 H112 H111 120.0 120.0
C10 C11 H112 H113 240.0 240.0
H111 C11 H112 H113 120.0 119.9