PDB Chemical Component SLC
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SLC
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O2 |
C9 |
1.248 |
1.342 |
| C9 |
O3 |
1.241 |
1.207 |
| C9 |
C8 |
1.350 |
1.508 |
| C8 |
C7 |
1.488 |
1.544 |
| C8 |
N |
1.326 |
1.470 |
| C7 |
C6 |
1.526 |
1.552 |
| C6 |
C5 |
1.534 |
1.550 |
| C5 |
N |
1.459 |
1.474 |
| N |
C4 |
1.350 |
1.348 |
| C4 |
O1 |
1.213 |
1.216 |
| C4 |
C2 |
1.464 |
1.471 |
| C2 |
C3 |
1.311 |
1.330 |
| C2 |
C1 |
1.510 |
1.508 |
| C1 |
SE |
1.959 |
1.959 |
| SE |
HSE |
1.460 |
1.560 |
| O2 |
H2 |
0.950 |
0.967 |
| C7 |
H71C |
1.100 |
1.089 |
| C7 |
H72C |
1.100 |
1.090 |
| C6 |
H61C |
1.100 |
1.090 |
| C6 |
H62C |
1.100 |
1.090 |
| C5 |
H51C |
1.100 |
1.089 |
| C5 |
H52C |
1.100 |
1.090 |
| C3 |
H31C |
1.080 |
1.080 |
| C3 |
H32C |
1.080 |
1.081 |
| C1 |
H11C |
1.100 |
1.090 |
| C1 |
H12C |
1.100 |
1.090 |
| C8 |
H8 |
1.099 |
1.089 |
Bond Angles for SLC
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C9 |
C8 |
C7 |
126.0 |
109.9 |
| C9 |
C8 |
H8 |
38.9 |
109.9 |
| C8 |
C7 |
C6 |
99.4 |
103.0 |
| C8 |
C7 |
H71C |
113.0 |
110.7 |
| C8 |
C7 |
H72C |
113.0 |
110.7 |
| C7 |
C8 |
H8 |
120.0 |
109.9 |
| C7 |
C6 |
C5 |
107.6 |
101.6 |
| C6 |
C7 |
H71C |
113.0 |
110.8 |
| C6 |
C7 |
H72C |
113.0 |
110.7 |
| C7 |
C6 |
H61C |
110.1 |
111.0 |
| C7 |
C6 |
H62C |
110.1 |
111.0 |
| C5 |
C6 |
H61C |
110.1 |
111.0 |
| C5 |
C6 |
H62C |
110.1 |
111.0 |
| C6 |
C5 |
H51C |
112.5 |
110.4 |
| C6 |
C5 |
H52C |
112.4 |
110.4 |
| O1 |
C4 |
C2 |
115.2 |
120.0 |
| C4 |
C2 |
C3 |
121.7 |
120.0 |
| C4 |
C2 |
C1 |
119.9 |
120.0 |
| C3 |
C2 |
C1 |
118.3 |
120.0 |
| C2 |
C3 |
H31C |
120.0 |
120.0 |
| C2 |
C3 |
H32C |
120.0 |
120.0 |
| C2 |
C1 |
SE |
107.5 |
109.5 |
| C2 |
C1 |
H11C |
110.1 |
109.5 |
| C2 |
C1 |
H12C |
110.1 |
109.4 |
| C1 |
SE |
HSE |
109.5 |
101.0 |
| SE |
C1 |
H11C |
110.1 |
109.5 |
| SE |
C1 |
H12C |
110.1 |
109.5 |
| H71C |
C7 |
H72C |
105.8 |
110.8 |
| H61C |
C6 |
H62C |
108.8 |
110.9 |
| H51C |
C5 |
H52C |
106.3 |
110.4 |
| H31C |
C3 |
H32C |
120.0 |
120.0 |
| H11C |
C1 |
H12C |
108.8 |
109.4 |
Torsion Angles for SLC
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2 |
C9 |
C8 |
H8 |
86.9 |
59.6 |
| O3 |
C9 |
C8 |
C7 |
175.3 |
118.6 |
| O3 |
C9 |
C8 |
H8 |
270.2 |
239.6 |
| C9 |
C8 |
C7 |
C6 |
224.0 |
218.4 |
| C9 |
C8 |
C7 |
H71C |
344.0 |
336.8 |
| C9 |
C8 |
C7 |
H72C |
104.0 |
100.1 |
| C7 |
C8 |
C9 |
H8 |
265.1 |
239.0 |
| C9 |
C8 |
C7 |
H8 |
46.3 |
121.1 |
| C8 |
C7 |
C6 |
C5 |
339.3 |
35.5 |
| C6 |
C7 |
C8 |
H71C |
240.0 |
241.6 |
| C6 |
C7 |
C8 |
H72C |
120.0 |
118.3 |
| C8 |
C7 |
C6 |
H61C |
99.3 |
153.6 |
| C8 |
C7 |
C6 |
H62C |
219.3 |
277.5 |
| H71C |
C7 |
C8 |
H72C |
240.0 |
236.8 |
| C8 |
C7 |
C6 |
H71C |
120.0 |
118.4 |
| C8 |
C7 |
C6 |
H72C |
240.0 |
241.7 |
| C6 |
C7 |
C8 |
H8 |
177.7 |
97.3 |
| C5 |
C6 |
C7 |
H61C |
240.0 |
242.0 |
| C5 |
C6 |
C7 |
H62C |
120.0 |
118.1 |
| C7 |
C6 |
C5 |
H51C |
121.1 |
81.8 |
| C7 |
C6 |
C5 |
H52C |
241.1 |
204.1 |
| H71C |
C7 |
C6 |
H72C |
120.0 |
123.3 |
| H61C |
C6 |
C7 |
H62C |
240.0 |
236.1 |
| C5 |
C6 |
C7 |
H71C |
219.3 |
277.2 |
| C5 |
C6 |
C7 |
H72C |
99.3 |
153.8 |
| C7 |
C6 |
C5 |
H61C |
120.0 |
118.1 |
| C7 |
C6 |
C5 |
H62C |
240.0 |
241.9 |
| H61C |
C6 |
C5 |
H62C |
120.0 |
123.8 |
| H51C |
C5 |
C6 |
H52C |
240.0 |
237.7 |
| O1 |
C4 |
C2 |
C3 |
159.9 |
6.0 |
| O1 |
C4 |
C2 |
C1 |
343.0 |
186.0 |
| C3 |
C2 |
C4 |
C1 |
176.9 |
180.0 |
| C4 |
C2 |
C3 |
H31C |
183.1 |
180.0 |
| C4 |
C2 |
C3 |
H32C |
3.0 |
360.0 |
| C4 |
C2 |
C1 |
SE |
255.1 |
187.0 |
| C4 |
C2 |
C1 |
H11C |
15.1 |
307.1 |
| C4 |
C2 |
C1 |
H12C |
135.1 |
67.0 |
| C4 |
C2 |
C3 |
C1 |
183.1 |
180.0 |
| C3 |
C2 |
C1 |
SE |
78.1 |
7.0 |
| C3 |
C2 |
C1 |
H11C |
198.1 |
127.1 |
| C3 |
C2 |
C1 |
H12C |
318.1 |
247.0 |
| H31C |
C3 |
C2 |
H32C |
180.0 |
180.0 |
| C4 |
C2 |
C1 |
C3 |
177.0 |
180.0 |
| C1 |
C2 |
C3 |
H31C |
0.0 |
360.0 |
| C1 |
C2 |
C3 |
H32C |
180.0 |
180.0 |
| C2 |
C1 |
SE |
HSE |
180.0 |
180.0 |
| SE |
C1 |
C2 |
H11C |
240.0 |
239.9 |
| SE |
C1 |
C2 |
H12C |
120.0 |
120.0 |
| H11C |
C1 |
C2 |
H12C |
240.0 |
240.1 |
| C2 |
C1 |
SE |
H11C |
120.0 |
120.0 |
| C2 |
C1 |
SE |
H12C |
240.0 |
240.0 |
| H11C |
C1 |
SE |
H12C |
120.0 |
120.0 |
| HSE |
SE |
C1 |
H11C |
60.0 |
60.0 |
| HSE |
SE |
C1 |
H12C |
300.0 |
300.0 |
| C8 |
C7 |
H71C |
C6 |
248.1 |
246.4 |
| C8 |
C7 |
H71C |
H72C |
124.1 |
123.2 |
| H71C |
C7 |
C8 |
H8 |
297.7 |
215.8 |
| H71C |
C7 |
C6 |
C5 |
219.3 |
277.2 |
| C6 |
C7 |
H71C |
H72C |
236.0 |
236.7 |
| H71C |
C7 |
C6 |
H61C |
339.3 |
35.2 |
| H71C |
C7 |
C6 |
H62C |
99.3 |
159.1 |
| C8 |
C7 |
H72C |
C6 |
111.9 |
113.5 |
| C8 |
C7 |
H72C |
H71C |
235.9 |
236.8 |
| H72C |
C7 |
C8 |
H8 |
57.7 |
339.0 |
| H72C |
C7 |
C6 |
C5 |
99.3 |
153.8 |
| C6 |
C7 |
H72C |
H71C |
124.1 |
123.3 |
| H72C |
C7 |
C6 |
H61C |
219.3 |
271.9 |
| H72C |
C7 |
C6 |
H62C |
339.3 |
35.8 |
| C7 |
C6 |
H61C |
C5 |
241.5 |
247.8 |
| H61C |
C6 |
C7 |
H71C |
339.3 |
35.2 |
| H61C |
C6 |
C7 |
H72C |
219.3 |
271.9 |
| C7 |
C6 |
H61C |
H62C |
120.8 |
124.0 |
| C5 |
C6 |
H61C |
H62C |
239.3 |
236.1 |
| H61C |
C6 |
C5 |
H51C |
1.1 |
323.8 |
| H61C |
C6 |
C5 |
H52C |
121.1 |
86.1 |
| C7 |
C6 |
H62C |
C5 |
118.5 |
112.2 |
| H62C |
C6 |
C7 |
H71C |
99.3 |
159.1 |
| H62C |
C6 |
C7 |
H72C |
339.3 |
35.8 |
| C7 |
C6 |
H62C |
H61C |
239.2 |
236.0 |
| C5 |
C6 |
H62C |
H61C |
120.7 |
123.9 |
| H62C |
C6 |
C5 |
H51C |
241.1 |
199.9 |
| H62C |
C6 |
C5 |
H52C |
1.1 |
322.2 |
| H51C |
C5 |
C6 |
H61C |
1.1 |
323.8 |
| H51C |
C5 |
C6 |
H62C |
241.1 |
199.9 |
| C6 |
C5 |
H51C |
H52C |
123.5 |
122.3 |
| H52C |
C5 |
C6 |
H61C |
121.1 |
86.1 |
| H52C |
C5 |
C6 |
H62C |
1.1 |
322.2 |
| C6 |
C5 |
H52C |
H51C |
236.5 |
237.7 |
| H31C |
C3 |
C2 |
C1 |
0.0 |
360.0 |
| C2 |
C3 |
H31C |
H32C |
180.0 |
180.0 |
| H32C |
C3 |
C2 |
C1 |
180.0 |
180.0 |
| C2 |
C3 |
H32C |
H31C |
180.0 |
180.0 |
| C2 |
C1 |
H11C |
SE |
241.6 |
240.0 |
| C2 |
C1 |
H11C |
H12C |
120.8 |
119.9 |
| H11C |
C1 |
SE |
HSE |
60.0 |
60.0 |
| SE |
C1 |
H11C |
H12C |
239.2 |
239.9 |
| C2 |
C1 |
H12C |
SE |
118.4 |
120.0 |
| C2 |
C1 |
H12C |
H11C |
239.2 |
240.1 |
| H12C |
C1 |
SE |
HSE |
300.0 |
300.0 |
| SE |
C1 |
H12C |
H11C |
120.8 |
120.1 |
| C9 |
C8 |
H8 |
C7 |
248.6 |
239.0 |
| H8 |
C8 |
C7 |
C6 |
177.7 |
97.3 |
| H8 |
C8 |
C7 |
H71C |
297.7 |
215.8 |
| H8 |
C8 |
C7 |
H72C |
57.7 |
339.0 |