PDB Chemical Component SKP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SKP

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.414	1.317
C1	C6	1.484	1.501
C1	C7	1.494	1.469
C2	C3	1.530	1.500
C2	H2	1.103	1.081
C3	C4	1.572	1.529
C3	O1	1.492	1.428
C3	H3	1.115	1.090
C4	C5	1.534	1.534
C4	O2	1.437	1.429
C4	H4	1.114	1.090
C5	C6	1.576	1.530
C5	O3	1.434	1.428
C5	H5	1.116	1.089
C6	H61	1.115	1.090
C6	H62	1.115	1.088
C7	O4	1.222	1.349
C7	O5	1.194	1.215
O1	P1	1.601	1.610
O2	HO2	0.949	0.968
O3	C8	1.428	1.429
O4	HO4	0.949	0.967
P1	O6	1.546	1.480
P1	O7	1.577	1.610
P1	O8	1.541	1.609
O7	HO7	0.951	0.967
O8	HO8	0.951	0.967
C8	C9	1.556	1.530
C8	C10	1.500	1.506
C8	O14	1.511	1.429
C9	H91	1.115	1.090
C9	H92	1.115	1.090
C9	H93	1.115	1.089
C10	O9	1.267	1.208
C10	O10	1.247	1.342
O10	H10	0.950	0.967
P2	O11	1.538	1.479
P2	O12	1.508	1.610
P2	O13	1.560	1.610
P2	O14	1.671	1.610
O12	H12	0.950	0.967
O13	H13	0.950	0.967

Bond Angles for SKP

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	122.9	123.8
C2	C1	C7	118.0	118.1
C1	C2	C3	118.6	123.8
C1	C2	H2	116.9	118.1
C6	C1	C7	119.1	118.1
C1	C6	C5	116.5	110.1
C1	C6	H61	109.6	109.3
C1	C6	H62	109.6	109.3
C1	C7	O4	117.7	120.0
C1	C7	O5	116.9	120.1
C3	C2	H2	124.5	118.1
C2	C3	C4	112.4	110.2
C2	C3	O1	109.0	109.4
C2	C3	H3	108.4	109.4
C4	C3	O1	111.0	109.1
C4	C3	H3	106.3	109.4
C3	C4	C5	109.3	108.6
C3	C4	O2	108.2	109.7
C3	C4	H4	111.0	109.6
O1	C3	H3	109.7	109.4
C3	O1	P1	122.5	106.8
C5	C4	O2	111.2	110.0
C5	C4	H4	108.1	109.3
C4	C5	C6	104.8	108.7
C4	C5	O3	109.2	109.6
C4	C5	H5	112.5	109.6
O2	C4	H4	109.1	109.6
C4	O2	HO2	108.2	106.7
C6	C5	O3	109.1	109.7
C6	C5	H5	112.6	109.6
C5	C6	H61	109.7	109.4
C5	C6	H62	109.7	109.4
O3	C5	H5	108.5	109.7
C5	O3	C8	124.5	106.7
H61	C6	H62	100.6	109.3
O4	C7	O5	125.3	120.0
C7	O4	HO4	117.8	120.0
O1	P1	O6	108.5	109.5
O1	P1	O7	105.6	109.5
O1	P1	O8	102.7	109.5
O3	C8	C9	115.9	109.4
O3	C8	C10	107.0	109.5
O3	C8	O14	113.0	109.5
O6	P1	O7	112.8	109.5
O6	P1	O8	111.1	109.5
O7	P1	O8	115.3	109.4
P1	O7	HO7	105.5	106.8
P1	O8	HO8	102.8	106.8
C9	C8	C10	109.8	109.5
C9	C8	O14	104.2	109.5
C8	C9	H91	115.9	109.5
C8	C9	H92	109.9	109.5
C8	C9	H93	109.9	109.5
C10	C8	O14	106.6	109.4
C8	C10	O9	110.3	120.0
C8	C10	O10	124.8	120.0
C8	O14	P2	135.6	106.8
H91	C9	H92	109.9	109.5
H91	C9	H93	109.8	109.4
H92	C9	H93	100.3	109.5
O9	C10	O10	124.9	120.0
C10	O10	H10	124.8	120.1
O11	P2	O12	110.4	109.5
O11	P2	O13	109.1	109.5
O11	P2	O14	109.1	109.5
O12	P2	O13	112.5	109.5
O12	P2	O14	106.0	109.4
P2	O12	H12	110.4	106.8
O13	P2	O14	109.6	109.4
P2	O13	H13	109.2	106.8

Torsion Angles for SKP

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	C1	C2	C7	178.7	179.9
C2	C1	C6	C5	13.6	17.2
C2	C1	C6	H61	138.9	257.0
C2	C1	C6	H62	248.4	137.5
C2	C1	C7	O4	327.9	179.9
C2	C1	C7	O5	148.6	359.9
C3	C2	C1	H2	180.0	179.9
C1	C2	C3	C4	20.8	17.1
C1	C2	C3	O1	257.2	257.2
C1	C2	C3	H3	137.9	137.4
C2	C1	C6	C7	181.4	180.1
C6	C1	C2	C3	359.9	359.5
C6	C1	C2	H2	180.0	179.5
C6	C1	C7	O4	149.2	0.0
C6	C1	C7	O5	329.9	180.0
C4	C5	C6	C1	314.0	310.4
C1	C6	C5	O3	197.2	190.6
C1	C6	C5	H5	76.7	70.1
C5	C6	C1	H61	234.8	120.2
C5	C6	C1	H62	125.3	239.7
H61	C6	C1	H62	250.5	119.6
C2	C1	C7	C6	178.7	179.9
C7	C1	C2	C3	181.3	179.6
C7	C1	C2	H2	1.3	359.6
C7	C1	C6	C5	192.3	197.1
C7	C1	C6	H61	317.5	76.9
C7	C1	C6	H62	67.0	317.4
O4	C7	C1	O5	179.3	180.0
C1	C7	O4	HO4	180.0	180.0
C3	C2	C1	C6	359.9	359.5
C3	C2	C1	C7	181.3	179.6
C1	C2	C3	H2	180.0	180.1
C4	C3	C2	O1	123.5	120.0
C4	C3	C2	H3	242.9	239.7
C2	C3	C4	C5	304.1	310.5
C2	C3	C4	O2	182.9	190.3
C2	C3	C4	H4	63.2	69.9
O1	C3	C2	H3	119.4	119.8
C2	C3	O1	P1	255.5	240.0
H2	C2	C1	C6	180.0	179.5
H2	C2	C1	C7	1.3	359.6
C1	C2	H2	C3	180.0	180.0
H2	C2	C3	C4	200.8	197.1
H2	C2	C3	O1	77.2	77.1
H2	C2	C3	H3	317.9	317.4
C4	C3	C2	H2	200.8	197.1
C2	C3	C4	O1	237.6	239.8
C2	C3	C4	H3	118.4	120.3
O1	C3	C4	H3	240.7	240.4
C4	C3	O1	P1	131.2	119.3
C5	C4	C3	O2	121.2	120.2
C5	C4	C3	H4	240.9	240.6
C3	C4	C5	C6	66.1	67.7
C3	C4	C5	O3	182.9	187.6
C3	C4	C5	H5	303.4	308.0
O2	C4	C3	H4	119.7	120.4
C3	C4	O2	HO2	180.0	300.0
O1	C3	C2	H2	77.2	77.1
C2	C3	O1	C4	124.3	120.7
C2	C3	O1	H3	241.5	240.2
C4	C3	O1	H3	117.2	119.6
O1	C3	C4	C5	66.5	70.7
O1	C3	C4	O2	305.3	310.5
O1	C3	C4	H4	185.6	190.1
C3	O1	P1	O6	64.1	60.0
C3	O1	P1	O7	302.9	180.0
C3	O1	P1	O8	181.8	300.0
H3	C3	C2	H2	317.9	317.4
C2	C3	H3	C4	239.0	239.2
C2	C3	H3	O1	118.9	119.8
C4	C3	H3	O1	239.9	240.6
H3	C3	C4	C5	185.8	190.2
H3	C3	C4	O2	64.6	70.0
H3	C3	C4	H4	304.9	309.6
H3	C3	O1	P1	14.0	359.7
C1	C6	C5	C4	314.0	310.4
C5	C4	C3	O1	66.5	70.7
C5	C4	C3	H3	185.8	190.2
C3	C4	C5	O2	240.7	240.0
C3	C4	C5	H4	120.9	119.6
O2	C4	C5	H4	240.3	239.6
C5	C4	O2	HO2	60.0	180.7
C6	C5	C4	O3	243.2	240.2
C6	C5	C4	H5	122.7	119.7
C4	C5	C6	H61	188.8	70.5
C4	C5	C6	H62	79.3	190.2
O3	C5	C4	H5	239.5	239.5
C4	C5	O3	C8	111.7	150.4
O2	C4	C3	O1	305.3	310.5
O2	C4	C3	H3	64.6	70.0
C3	C4	O2	C5	120.0	119.3
C3	C4	O2	H4	239.1	239.6
C5	C4	O2	H4	119.1	120.3
O2	C4	C5	C6	185.5	187.7
O2	C4	C5	O3	302.2	307.6
O2	C4	C5	H5	62.8	68.0
H4	C4	C3	O1	185.6	190.1
H4	C4	C3	H3	304.9	309.6
C3	C4	H4	C5	240.2	241.1
C3	C4	H4	O2	119.1	120.4
C5	C4	H4	O2	239.0	239.4
H4	C4	C5	C6	305.2	308.2
H4	C4	C5	O3	62.0	68.0
H4	C4	C5	H5	182.5	188.4
H4	C4	O2	HO2	300.9	60.4
C5	C6	C1	C7	192.3	197.1
C1	C6	C5	H61	125.2	239.8
C1	C6	C5	H62	234.7	120.2
C6	C5	C4	O2	185.5	187.7
C6	C5	C4	H4	305.2	308.2
C4	C5	C6	O3	116.8	119.8
C4	C5	C6	H5	237.4	240.3
O3	C5	C6	H5	120.5	120.5
C6	C5	O3	C8	225.8	269.7
H61	C6	C5	H62	109.5	240.4
O3	C5	C4	O2	302.2	307.6
O3	C5	C4	H4	62.0	68.0
C4	C5	O3	C6	246.0	240.8
C4	C5	O3	H5	122.9	120.4
C6	C5	O3	H5	237.0	239.6
O3	C5	C6	H61	72.0	310.7
O3	C5	C6	H62	322.4	70.4
C5	O3	C8	C9	317.8	180.0
C5	O3	C8	C10	195.0	60.0
C5	O3	C8	O14	77.9	300.0
H5	C5	C4	O2	62.8	68.0
H5	C5	C4	H4	182.5	188.4
C4	C5	H5	C6	118.2	119.1
C4	C5	H5	O3	239.1	239.6
C6	C5	H5	O3	120.9	120.5
H5	C5	C6	H61	311.4	190.2
H5	C5	C6	H62	201.9	309.9
H5	C5	O3	C8	348.8	30.1
H61	C6	C1	C7	317.5	76.9
C1	C6	H61	C5	230.9	120.7
C1	C6	H61	H62	115.4	240.4
H61	C6	C5	O3	72.0	310.7
H61	C6	C5	H5	311.4	190.2
C5	C6	H61	H62	244.5	119.7
H62	C6	C1	C7	67.0	317.4
C1	C6	H62	C5	129.1	239.3
C1	C6	H62	H61	244.6	119.6
H62	C6	C5	O3	322.4	70.4
H62	C6	C5	H5	201.9	309.9
C5	C6	H62	H61	115.5	240.3
C1	C7	O4	O5	180.8	180.0
C1	C7	O5	O4	179.2	180.0
O5	C7	O4	HO4	359.2	360.0
P1	O1	C3	H3	14.0	359.7
O6	P1	O1	O7	121.2	240.0
O6	P1	O1	O8	242.3	120.0
O7	P1	O1	O8	121.1	240.0
O1	P1	O7	HO7	180.0	180.1
O1	P1	O8	HO8	180.0	300.1
HO2	O2	C4	H4	300.9	60.4
C8	O3	C5	H5	348.8	30.1
C9	C8	O3	C10	122.8	120.0
C9	C8	O3	O14	239.9	240.0
O3	C8	C9	H91	180.0	72.5
O3	C8	C9	H92	305.3	192.5
O3	C8	C9	H93	54.7	312.5
C10	C8	O3	O14	117.1	120.0
O3	C8	C10	O9	288.2	263.2
O3	C8	C10	O10	104.8	83.1
O3	C8	O14	P2	301.8	190.1
HO4	O4	C7	O5	359.2	360.0
O1	P1	O6	O7	243.4	120.0
O1	P1	O6	O8	112.2	239.9
O7	P1	O6	O8	228.8	120.0
O6	P1	O7	HO7	61.7	300.0
O6	P1	O8	HO8	295.9	180.0
O1	P1	O7	O6	118.3	240.0
O1	P1	O7	O8	247.4	120.0
O6	P1	O7	O8	129.1	240.0
O7	P1	O8	HO8	65.8	60.1
O1	P1	O8	O6	244.2	120.0
O1	P1	O8	O7	114.2	240.0
O6	P1	O8	O7	230.1	120.0
O8	P1	O7	HO7	292.6	60.0
HO7	O7	P1	O8	292.6	60.0
O3	C8	C9	C10	238.6	239.9
O3	C8	C9	O14	124.8	120.0
C10	C8	C9	O14	246.1	240.0
C9	C8	C10	O9	161.6	143.2
C9	C8	C10	O10	338.3	323.1
C9	C8	O14	P2	68.4	310.0
H91	C9	C8	H92	234.7	240.0
H91	C9	C8	H93	125.2	120.0
H92	C9	C8	H93	250.6	240.0
O3	C8	C10	C9	126.5	120.0
O3	C8	C10	O14	238.8	240.0
C9	C8	C10	O14	112.3	120.0
C10	C8	C9	H91	301.3	192.5
C10	C8	C9	H92	66.7	312.5
C10	C8	C9	H93	176.1	72.6
C10	C8	O14	P2	184.5	70.0
O9	C10	C8	O10	183.3	180.1
C8	C10	O10	H10	180.0	180.0
O3	C8	O14	C9	233.4	240.0
O3	C8	O14	C10	117.3	120.1
C9	C8	O14	C10	243.9	240.0
O14	C8	C9	H91	55.2	312.5
O14	C8	C9	H92	180.5	72.5
O14	C8	C9	H93	290.0	192.5
O14	C8	C10	O9	49.3	23.3
O14	C8	C10	O10	226.0	203.2
O11	P2	O14	C8	212.3	74.5
O12	P2	O14	C8	93.4	194.5
O13	P2	O14	C8	331.7	314.5
H91	C9	C8	C10	301.3	192.5
H91	C9	C8	O14	55.2	312.5
C8	C9	H91	H92	125.3	120.0
C8	C9	H91	H93	234.7	240.0
H92	C9	H91	H93	109.4	120.0
H92	C9	C8	C10	66.7	312.5
H92	C9	C8	O14	180.5	72.5
C8	C9	H92	H91	231.3	240.0
C8	C9	H92	H93	115.7	120.0
H91	C9	H92	H93	244.4	240.0
H93	C9	C8	C10	176.1	72.6
H93	C9	C8	O14	290.0	192.5
C8	C9	H93	H91	128.6	120.0
C8	C9	H93	H92	244.3	240.0
H91	C9	H93	H92	115.7	120.0
O9	C10	C8	O14	49.3	23.3
C8	C10	O9	O10	176.6	179.9
O9	C10	O10	H10	356.1	360.0
O10	C10	C8	O14	226.0	203.2
C8	C10	O10	O9	183.8	180.1
C8	O14	P2	O11	212.3	74.5
O12	P2	O11	O13	235.8	120.0
O12	P2	O11	O14	116.2	240.0
O11	P2	O12	H12	180.0	300.0
O13	P2	O11	O14	240.3	120.0
O11	P2	O13	H13	180.0	160.5
C8	O14	P2	O12	93.4	194.5
O11	P2	O12	O13	122.2	240.0
O11	P2	O12	O14	241.9	120.0
O13	P2	O12	O14	119.7	240.1
O12	P2	O13	H13	302.9	40.5
C8	O14	P2	O13	331.7	314.5
O11	P2	O13	O12	237.1	120.0
O11	P2	O13	O14	119.4	239.9
O12	P2	O13	O14	242.3	119.9
O13	P2	O12	H12	57.8	60.1
O11	P2	O14	O12	118.9	240.0
O11	P2	O14	O13	240.6	120.0
O12	P2	O14	O13	121.6	240.0
O14	P2	O12	H12	298.0	180.0
O14	P2	O13	H13	60.6	280.6
H12	O12	P2	O13	57.8	60.1
H12	O12	P2	O14	298.0	180.0
H13	O13	P2	O14	60.6	280.6