PDB Chemical Component SKO

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SKO

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N02 C02 1.355 1.390
C02 C03 1.395 1.391
C02 N01 1.359 1.324
C03 C04 1.389 1.383
C04 C07 1.507 1.507
C04 C05 1.391 1.388
C05 C06 1.397 1.381
N01 C06 1.348 1.320
C06 C08 1.509 1.507
C08 C09 1.530 1.530
C09 C12 1.509 1.507
C12 C13 1.396 1.381
C12 N11 1.351 1.319
C13 C14 1.389 1.388
C14 C15 1.391 1.384
C15 C16 1.390 1.390
N11 C16 1.345 1.324
C16 N17 1.399 1.391
N17 C17 1.456 1.465
N17 C18 1.463 1.465
C18 C19 1.535 1.530
C19 N20 1.475 1.469
N20 C21 1.479 1.469
N02 H021 1.000 0.969
N02 H022 1.000 0.970
C03 H03 1.080 1.081
C07 H071 1.100 1.090
C07 H072 1.100 1.090
C07 H073 1.100 1.089
C05 H05 1.080 1.080
C08 H081 1.100 1.090
C08 H082 1.100 1.090
C09 H091 1.099 1.090
C09 H092 1.100 1.090
C13 H13 1.080 1.079
C14 H14 1.080 1.080
C15 H15 1.080 1.080
C17 H171 1.100 1.091
C17 H172 1.100 1.090
C17 H173 1.100 1.090
C18 H181 1.100 1.090
C18 H182 1.100 1.090
C19 H191 1.100 1.090
C19 H192 1.100 1.090
N20 H20 1.000 1.010
C21 H211 1.100 1.090
C21 H212 1.100 1.090
C21 H213 1.099 1.090

Bond Angles for SKO

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N02 C02 C03 120.8 119.7
N02 C02 N01 118.3 119.7
C02 N02 H021 109.5 120.0
C02 N02 H022 109.4 119.9
C03 C02 N01 120.9 120.6
C02 C03 C04 119.0 119.1
C02 C03 H03 120.5 120.4
C02 N01 C06 120.8 121.6
C03 C04 C07 120.5 120.7
C03 C04 C05 119.4 118.5
C04 C03 H03 120.5 120.4
C07 C04 C05 120.1 120.8
C04 C07 H071 109.5 109.5
C04 C07 H072 109.4 109.5
C04 C07 H073 109.5 109.5
C04 C05 C06 119.7 119.3
C04 C05 H05 120.2 120.3
C05 C06 N01 120.3 120.9
C05 C06 C08 121.2 119.6
C06 C05 H05 120.1 120.3
N01 C06 C08 118.6 119.6
C06 C08 C09 107.9 109.5
C06 C08 H081 109.9 109.5
C06 C08 H082 109.9 109.4
C08 C09 C12 107.2 109.5
C09 C08 H081 109.9 109.5
C09 C08 H082 109.8 109.5
C08 C09 H091 110.0 109.5
C08 C09 H092 110.0 109.4
C09 C12 C13 120.8 119.5
C09 C12 N11 118.4 119.6
C12 C09 H091 110.1 109.5
C12 C09 H092 110.1 109.5
C13 C12 N11 120.8 120.9
C12 C13 C14 120.3 119.3
C12 C13 H13 119.8 120.4
C12 N11 C16 120.2 121.6
C13 C14 C15 117.2 118.5
C14 C13 H13 119.8 120.4
C13 C14 H14 121.4 120.7
C14 C15 C16 121.1 119.1
C15 C14 H14 121.4 120.8
C14 C15 H15 119.5 120.5
C15 C16 N11 120.4 120.6
C15 C16 N17 119.6 119.7
C16 C15 H15 119.5 120.5
N11 C16 N17 120.0 119.7
C16 N17 C17 118.9 120.0
C16 N17 C18 120.4 120.0
C17 N17 C18 120.7 120.0
N17 C17 H171 109.5 109.5
N17 C17 H172 109.5 109.5
N17 C17 H173 109.5 109.5
N17 C18 C19 108.0 109.5
N17 C18 H181 109.8 109.5
N17 C18 H182 109.8 109.5
C18 C19 N20 110.2 109.5
C19 C18 H181 109.9 109.4
C19 C18 H182 109.8 109.5
C18 C19 H191 109.3 109.5
C18 C19 H192 109.3 109.5
C19 N20 C21 109.5 111.0
N20 C19 H191 109.3 109.4
N20 C19 H192 109.3 109.4
C19 N20 H20 109.5 111.0
C21 N20 H20 109.5 111.0
N20 C21 H211 109.5 109.4
N20 C21 H212 109.4 109.5
N20 C21 H213 109.5 109.4
H021 N02 H022 109.5 120.1
H071 C07 H072 109.5 109.4
H071 C07 H073 109.5 109.4
H072 C07 H073 109.5 109.5
H081 C08 H082 109.5 109.5
H091 C09 H092 109.5 109.5
H171 C17 H172 109.5 109.4
H171 C17 H173 109.5 109.4
H172 C17 H173 109.5 109.4
H181 C18 H182 109.5 109.4
H191 C19 H192 109.5 109.5
H211 C21 H212 109.5 109.5
H211 C21 H213 109.5 109.5
H212 C21 H213 109.5 109.5

Torsion Angles for SKO

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C03 C02 N02 N01 179.7 180.2
N02 C02 C03 C04 179.9 180.0
N02 C02 C03 H03 359.9 0.0
N02 C02 N01 C06 181.1 179.7
H021 N02 C02 H022 240.0 180.3
N02 C02 C03 N01 180.3 179.7
C03 C02 N02 H021 179.7 360.0
C03 C02 N02 H022 299.7 179.7
C03 C02 N01 C06 1.4 359.5
C02 C03 C04 C07 179.8 180.1
C02 C03 C04 C05 359.0 0.0
C04 C03 C02 H03 180.0 180.0
N02 C02 N01 C03 179.7 180.3
N01 C02 N02 H021 360.0 179.7
N01 C02 N02 H022 120.0 359.4
N01 C02 C03 C04 359.6 0.3
N01 C02 C03 H03 179.6 180.3
C05 C06 N01 C02 359.0 0.6
C02 N01 C06 C08 179.6 180.3
C04 C03 C02 N01 359.6 0.3
C02 C03 C04 H03 180.0 180.0
C07 C04 C03 C05 180.7 180.0
C03 C04 C07 H071 89.6 90.0
C03 C04 C07 H072 209.6 210.0
C03 C04 C07 H073 329.6 330.0
C03 C04 C05 C06 1.3 0.0
C03 C04 C05 H05 181.3 180.0
C03 C04 C07 C05 179.3 180.0
C07 C04 C03 H03 359.8 0.0
C07 C04 C05 C06 180.6 180.0
C07 C04 C05 H05 0.6 359.9
H071 C07 C04 H072 240.0 240.0
H071 C07 C04 H073 120.0 120.0
H072 C07 C04 H073 240.0 240.0
C03 C04 C05 C07 180.7 180.0
C05 C04 C03 H03 179.1 180.0
C05 C04 C07 H071 270.4 270.1
C05 C04 C07 H072 30.4 30.0
C05 C04 C07 H073 150.4 150.1
C04 C05 C06 N01 359.7 359.7
C04 C05 C06 C08 179.1 179.9
C06 C05 C04 H05 180.0 180.0
C02 N01 C06 C05 359.0 0.6
C04 C05 C06 H05 180.0 180.0
N01 C06 C05 C08 180.6 179.8
C05 C06 C08 C09 261.1 125.0
C05 C06 C08 H081 20.9 245.0
C05 C06 C08 H082 141.4 5.0
C05 C06 N01 C08 179.4 180.2
N01 C06 C05 H05 179.6 179.7
N01 C06 C08 C09 80.6 305.2
N01 C06 C08 H081 200.3 65.3
N01 C06 C08 H082 320.8 185.2
C05 C06 C08 N01 180.6 179.8
C08 C06 C05 H05 359.0 360.0
C06 C08 C09 C12 86.1 180.0
C09 C08 C06 H081 240.2 239.9
C09 C08 C06 H082 119.7 120.0
C06 C08 C09 H091 205.7 300.1
C06 C08 C09 H092 326.5 60.0
H081 C08 C06 H082 239.5 240.0
C06 C08 C09 H081 119.8 120.0
C06 C08 C09 H082 240.2 240.1
C08 C09 C12 C13 278.7 125.0
C08 C09 C12 N11 98.0 304.8
C12 C09 C08 H091 240.3 239.9
C12 C09 C08 H092 119.6 120.0
H081 C08 C09 H082 120.5 120.1
H091 C09 C08 H092 239.3 240.0
C12 C09 C08 H081 326.3 60.0
C12 C09 C08 H082 205.8 299.9
C08 C09 C12 H091 119.6 120.1
C08 C09 C12 H092 240.4 240.1
C13 C12 C09 N11 180.8 180.2
C09 C12 C13 C14 178.1 180.0
C09 C12 C13 H13 358.1 359.9
C09 C12 N11 C16 181.5 179.8
H091 C09 C12 H092 120.7 120.0
C09 C12 C13 N11 179.2 179.7
C13 C12 C09 H091 159.1 5.0
C13 C12 C09 H092 38.4 245.0
C13 C12 N11 C16 0.8 359.5
C12 C13 C14 C15 359.9 0.0
C14 C13 C12 H13 180.0 180.0
C12 C13 C14 H14 179.9 180.0
C09 C12 N11 C13 180.8 180.3
N11 C12 C09 H091 338.3 184.7
N11 C12 C09 H092 217.6 64.7
N11 C12 C13 C14 358.9 0.2
N11 C12 C13 H13 178.9 180.2
C15 C16 N11 C12 0.7 0.5
C12 N11 C16 N17 180.8 180.3
C14 C13 C12 N11 358.9 0.2
C12 C13 C14 H13 180.0 180.0
C13 C14 C15 C16 1.6 0.0
C15 C14 C13 H14 180.0 180.0
C13 C14 C15 H15 181.6 180.0
C15 C14 C13 H13 179.9 180.1
C13 C14 C15 H14 180.0 180.0
C14 C15 C16 N11 358.1 359.7
C14 C15 C16 N17 178.0 180.0
C16 C15 C14 H15 180.0 180.1
C12 N11 C16 C15 0.7 0.5
C16 C15 C14 H14 181.6 180.1
C14 C15 C16 H15 180.0 179.9
N11 C16 C15 N17 180.1 179.7
C15 C16 N17 C17 16.1 5.0
C15 C16 N17 C18 198.1 185.0
C15 C16 N11 N17 179.9 180.3
N11 C16 C15 H15 178.0 179.8
N11 C16 N17 C17 196.0 185.2
N11 C16 N17 C18 18.0 5.2
C15 C16 N17 N11 180.1 179.7
N17 C16 C15 H15 358.0 0.0
C17 N17 C16 C18 178.1 180.0
C16 N17 C17 H171 180.0 90.0
C16 N17 C17 H172 300.0 210.0
C16 N17 C17 H173 60.0 330.0
C16 N17 C18 C19 98.3 90.0
C16 N17 C18 H181 218.1 210.0
C16 N17 C18 H182 338.6 330.0
C16 N17 C17 C18 181.9 180.0
C17 N17 C18 C19 280.3 270.0
C17 N17 C18 H181 40.1 30.0
C17 N17 C18 H182 160.5 150.0
H171 C17 N17 H172 240.0 240.0
H171 C17 N17 H173 120.0 120.0
H172 C17 N17 H173 240.0 240.0
C16 N17 C18 C17 178.0 180.0
C18 N17 C17 H171 358.1 270.0
C18 N17 C17 H172 118.1 30.0
C18 N17 C17 H173 238.1 150.0
N17 C18 C19 N20 297.6 180.0
C19 C18 N17 H181 240.2 240.0
C19 C18 N17 H182 119.8 120.0
N17 C18 C19 H191 57.7 300.0
N17 C18 C19 H192 177.5 60.0
H181 C18 N17 H182 239.6 240.0
N17 C18 C19 H181 119.8 120.0
N17 C18 C19 H182 240.2 240.0
C18 C19 N20 C21 201.4 180.0
N20 C19 C18 H191 239.9 240.1
N20 C19 C18 H192 120.1 120.0
C18 C19 N20 H20 321.4 304.0
H181 C18 C19 H182 120.5 119.9
H191 C19 C18 H192 240.2 239.9
N20 C19 C18 H181 177.8 60.0
N20 C19 C18 H182 57.3 300.0
C18 C19 N20 H191 120.1 120.0
C18 C19 N20 H192 239.9 239.9
C21 N20 C19 H20 240.0 236.0
C19 N20 C21 H211 180.0 299.9
C19 N20 C21 H212 300.0 60.0
C19 N20 C21 H213 60.0 180.0
H191 C19 N20 H192 119.8 120.0
C21 N20 C19 H191 81.3 60.0
C21 N20 C19 H192 321.5 300.1
C19 N20 C21 H20 120.0 123.9
H211 C21 N20 H212 240.0 240.0
H211 C21 N20 H213 120.0 119.9
H212 C21 N20 H213 240.0 240.0
H021 N02 C02 C03 179.7 360.0
H021 N02 C02 N01 360.0 179.7
C02 N02 H021 H022 120.0 179.7
H022 N02 C02 C03 299.7 179.7
H022 N02 C02 N01 120.0 359.4
C02 N02 H022 H021 240.0 180.3
H03 C03 C02 N01 179.6 180.3
C02 C03 H03 C04 180.0 180.0
H03 C03 C04 C07 359.8 0.0
H03 C03 C04 C05 179.1 180.0
H071 C07 C04 C05 270.4 270.1
C04 C07 H071 H072 120.0 120.0
C04 C07 H071 H073 240.0 240.0
H072 C07 H071 H073 120.0 120.0
H072 C07 C04 C05 30.4 30.0
C04 C07 H072 H071 240.0 240.0
C04 C07 H072 H073 120.0 120.0
H071 C07 H072 H073 240.0 240.1
H073 C07 C04 C05 150.4 150.1
C04 C07 H073 H071 120.0 120.1
C04 C07 H073 H072 240.0 240.0
H071 C07 H073 H072 120.0 119.9
C04 C05 H05 C06 180.0 180.0
H05 C05 C06 N01 179.6 179.7
H05 C05 C06 C08 359.0 360.0
C06 C08 H081 C09 241.4 240.0
C06 C08 H081 H082 120.7 119.9
H081 C08 C09 C12 326.3 60.0
C09 C08 H081 H082 239.3 239.9
H081 C08 C09 H091 86.0 180.0
H081 C08 C09 H092 206.7 300.0
C06 C08 H082 C09 118.5 120.0
C06 C08 H082 H081 239.3 240.0
H082 C08 C09 C12 205.8 299.9
C09 C08 H082 H081 120.7 120.1
H082 C08 C09 H091 325.5 60.0
H082 C08 C09 H092 86.2 180.0
C08 C09 H091 C12 242.1 240.0
H091 C09 C08 H081 86.0 180.0
H091 C09 C08 H082 325.5 60.0
C08 C09 H091 H092 121.1 119.9
H091 C09 C12 C13 159.1 5.0
H091 C09 C12 N11 338.3 184.7
C12 C09 H091 H092 238.9 240.0
C08 C09 H092 C12 117.9 119.9
H092 C09 C08 H081 206.7 300.0
H092 C09 C08 H082 86.2 180.0
C08 C09 H092 H091 238.9 240.0
H092 C09 C12 C13 38.4 245.0
H092 C09 C12 N11 217.6 64.7
C12 C09 H092 H091 121.1 120.1
H13 C13 C12 N11 178.9 180.2
C12 C13 H13 C14 180.0 180.0
H13 C13 C14 C15 179.9 180.1
H13 C13 C14 H14 359.9 0.0
C13 C14 H14 C15 180.0 180.0
H14 C14 C13 H13 359.9 0.0
H14 C14 C15 C16 181.6 180.1
H14 C14 C15 H15 1.6 360.0
C14 C15 H15 C16 180.0 180.1
H15 C15 C14 H14 1.6 360.0
H15 C15 C16 N11 178.0 179.8
H15 C15 C16 N17 358.0 0.0
H171 C17 N17 C18 358.1 270.0
N17 C17 H171 H172 120.0 120.0
N17 C17 H171 H173 240.0 239.9
H172 C17 H171 H173 120.0 119.9
H172 C17 N17 C18 118.1 30.0
N17 C17 H172 H171 240.0 240.0
N17 C17 H172 H173 120.0 120.1
H171 C17 H172 H173 240.0 240.1
H173 C17 N17 C18 238.1 150.0
N17 C17 H173 H171 120.0 120.0
N17 C17 H173 H172 240.0 240.0
H171 C17 H173 H172 120.0 119.9
N17 C18 H181 C19 241.3 240.0
N17 C18 H181 H182 120.7 120.0
H181 C18 C19 N20 177.8 60.0
C19 C18 H181 H182 239.3 240.0
H181 C18 C19 H191 297.9 179.9
H181 C18 C19 H192 57.7 300.0
N17 C18 H182 C19 118.7 120.0
N17 C18 H182 H181 239.4 240.0
H182 C18 C19 N20 57.3 300.0
C19 C18 H182 H181 120.7 120.0
H182 C18 C19 H191 177.5 60.0
H182 C18 C19 H192 297.2 180.0
C18 C19 H191 N20 239.3 240.0
H191 C19 C18 H181 297.9 179.9
H191 C19 C18 H182 177.5 60.0
C18 C19 H191 H192 119.6 120.1
H191 C19 N20 C21 81.3 60.0
N20 C19 H191 H192 240.3 240.1
H191 C19 N20 H20 201.3 184.0
C18 C19 H192 N20 120.6 120.0
H192 C19 C18 H181 57.7 300.0
H192 C19 C18 H182 297.2 180.0
C18 C19 H192 H191 240.4 239.9
H192 C19 N20 C21 321.5 300.1
N20 C19 H192 H191 119.7 119.9
H192 C19 N20 H20 81.5 64.0
C19 N20 H20 C21 240.0 236.0
H20 N20 C19 H191 201.3 184.0
H20 N20 C19 H192 81.5 64.0
H20 N20 C21 H211 60.0 176.0
H20 N20 C21 H212 180.0 296.0
H20 N20 C21 H213 300.0 56.1
H211 C21 N20 H20 60.0 176.0
N20 C21 H211 H212 120.0 120.0
N20 C21 H211 H213 240.0 240.1
H212 C21 H211 H213 120.0 120.1
H212 C21 N20 H20 180.0 296.0
N20 C21 H212 H211 240.0 240.0
N20 C21 H212 H213 120.0 120.0
H211 C21 H212 H213 240.0 240.0
H213 C21 N20 H20 300.0 56.1
N20 C21 H213 H211 120.0 119.9
N20 C21 H213 H212 240.0 240.0
H211 C21 H213 H212 120.0 120.1