PDB Chemical Component SKM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SKM

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O12	C8	1.429	1.428
O12	H12	0.950	0.968
C8	C6	1.542	1.533
C8	C9	1.540	1.530
C8	H8	1.115	1.090
C6	O7	1.430	1.429
C6	C5	1.541	1.530
C6	H6	1.115	1.091
O7	HO7	0.950	0.967
C5	C4	1.541	1.501
C5	H51	1.116	1.090
C5	H52	1.115	1.089
C4	C1	1.539	1.469
C4	C10	1.345	1.316
C1	O2	1.293	1.348
C1	O3	1.290	1.216
O2	HO2	0.950	0.968
C10	C9	1.541	1.501
C10	H10	1.103	1.080
C9	O11	1.431	1.430
C9	H9	1.115	1.091
O11	H11	0.950	0.967

Bond Angles for SKM

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C8	O12	H12	108.9	106.8
O12	C8	C6	108.9	110.0
O12	C8	C9	109.9	109.6
O12	C8	H8	109.7	109.7
C6	C8	C9	109.9	108.5
C6	C8	H8	109.7	109.3
C8	C6	O7	110.0	109.6
C8	C6	C5	109.3	108.7
C8	C6	H6	109.5	109.7
C9	C8	H8	108.7	109.6
C8	C9	C10	111.3	110.3
C8	C9	O11	109.9	109.1
C8	C9	H9	108.0	109.4
O7	C6	C5	110.4	109.6
O7	C6	H6	108.4	109.6
C6	O7	HO7	110.0	106.8
C5	C6	H6	109.1	109.6
C6	C5	C4	112.7	110.1
C6	C5	H51	111.0	109.4
C6	C5	H52	111.0	109.4
C4	C5	H51	111.0	109.4
C4	C5	H52	111.1	109.4
C5	C4	C1	119.1	118.1
C5	C4	C10	122.2	123.8
H51	C5	H52	99.3	109.3
C1	C4	C10	118.6	118.1
C4	C1	O2	120.0	120.0
C4	C1	O3	120.5	120.0
C4	C10	C9	123.1	123.8
C4	C10	H10	111.3	118.1
O2	C1	O3	119.5	120.0
C1	O2	HO2	120.0	120.0
C9	C10	H10	125.6	118.1
C10	C9	O11	109.7	109.4
C10	C9	H9	108.2	109.4
O11	C9	H9	109.6	109.3
C9	O11	H11	109.9	106.8

Torsion Angles for SKM

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	C8	O12	C9	239.6	240.7
C6	C8	O12	H8	120.1	120.3
O12	C8	C6	O7	177.2	307.5
O12	C8	C6	C5	55.7	187.7
O12	C8	C6	H6	296.2	67.9
C9	C8	O12	H8	240.5	239.6
O12	C8	C9	C10	289.2	190.3
O12	C8	C9	O11	51.0	310.5
O12	C8	C9	H9	170.6	70.0
H12	O12	C8	C6	180.0	180.7
H12	O12	C8	C9	300.4	299.9
H12	O12	C8	H8	59.9	60.4
C6	C8	O12	H12	180.0	180.7
O12	C8	C6	C9	120.4	119.9
O12	C8	C6	H8	239.9	239.5
C9	C8	C6	H8	119.5	119.5
C6	C8	C9	C10	49.0	310.5
C6	C8	C9	O11	170.8	70.7
C6	C8	C9	H9	290.4	190.2
O7	C6	C8	C5	121.4	119.8
O7	C6	C8	H6	240.9	239.6
C8	C6	O7	HO7	180.0	180.4
C5	C6	C8	H6	119.5	119.8
C8	C6	C5	C4	46.3	310.3
C8	C6	C5	H51	281.0	70.5
C8	C6	C5	H52	171.6	190.1
C9	C8	O12	H12	300.4	299.9
O12	C8	C9	C6	240.2	239.8
O12	C8	C9	H8	120.1	120.5
C6	C8	C9	H8	239.9	240.6
C9	C8	C6	O7	56.7	187.6
C9	C8	C6	C5	295.3	67.8
C9	C8	C6	H6	175.8	308.0
C4	C10	C9	C8	342.7	17.1
C8	C9	C10	H10	162.7	197.1
C10	C9	C8	O11	238.2	239.8
C10	C9	C8	H9	118.7	120.3
O11	C9	C8	H9	240.4	240.5
C8	C9	O11	H11	180.0	179.3
H8	C8	O12	H12	59.9	60.4
O12	C8	H8	C6	119.6	120.7
O12	C8	H8	C9	239.8	239.6
C6	C8	H8	C9	120.2	118.9
H8	C8	C6	O7	297.2	68.0
H8	C8	C6	C5	175.8	308.2
H8	C8	C6	H6	56.3	188.4
H8	C8	C9	C10	169.1	69.9
H8	C8	C9	O11	290.9	190.0
H8	C8	C9	H9	50.4	309.6
O7	C6	C8	C9	56.7	187.6
O7	C6	C8	H8	297.2	68.0
C8	C6	O7	C5	239.3	240.8
C8	C6	O7	H6	119.8	120.4
C5	C6	O7	H6	240.5	239.7
O7	C6	C5	C4	285.2	190.5
O7	C6	C5	H51	159.9	310.7
O7	C6	C5	H52	50.5	70.3
C5	C6	C8	C9	295.3	67.8
C5	C6	C8	H8	175.8	308.2
C8	C6	C5	O7	121.1	119.8
C8	C6	C5	H6	240.2	240.2
O7	C6	C5	H6	119.1	120.4
C5	C6	O7	HO7	300.7	299.6
C4	C5	C6	H51	125.3	239.8
C4	C5	C6	H52	234.7	120.2
C6	C5	C4	C1	168.7	197.2
C6	C5	C4	C10	345.2	17.2
H51	C5	C6	H52	109.4	240.4
H6	C6	C8	C9	175.8	308.0
H6	C6	C8	H8	56.3	188.4
C8	C6	H6	O7	240.0	239.6
C8	C6	H6	C5	119.6	119.2
O7	C6	H6	C5	239.7	239.6
H6	C6	O7	HO7	60.2	59.9
H6	C6	C5	C4	166.1	70.2
H6	C6	C5	H51	40.8	190.4
H6	C6	C5	H52	291.4	310.0
HO7	O7	C6	C5	300.7	299.6
HO7	O7	C6	H6	60.2	59.9
C4	C5	C6	H6	166.1	70.2
C6	C5	C4	H51	234.7	120.2
C6	C5	C4	H52	125.3	239.8
H51	C5	C4	H52	250.5	119.6
C1	C4	C5	C10	183.5	180.0
C5	C4	C1	O2	13.1	360.0
C5	C4	C1	O3	191.3	180.0
C5	C4	C10	C9	359.8	359.5
C5	C4	C10	H10	179.8	179.6
H51	C5	C6	H6	40.8	190.4
C6	C5	H51	C4	126.2	239.4
C6	C5	H51	H52	243.1	119.7
C4	C5	H51	H52	116.9	240.3
H51	C5	C4	C1	293.9	77.0
H51	C5	C4	C10	110.4	257.0
H52	C5	C6	H6	291.4	310.0
C6	C5	H52	C4	233.8	120.6
C6	C5	H52	H51	116.9	240.3
C4	C5	H52	H51	243.1	119.7
H52	C5	C4	C1	43.4	317.4
H52	C5	C4	C10	219.9	137.4
C1	C4	C5	H51	293.9	77.0
C1	C4	C5	H52	43.4	317.4
C5	C4	C1	C10	176.6	180.0
C1	C4	C10	C9	176.4	179.5
C1	C4	C10	H10	356.3	359.6
O2	C1	C4	O3	181.8	179.9
C4	C1	O2	HO2	180.0	180.1
C8	C9	C10	C4	342.7	17.1
C10	C4	C5	H51	110.4	257.0
C10	C4	C5	H52	219.9	137.4
C5	C4	C10	C1	183.5	180.0
C10	C4	C1	O2	196.4	180.0
C10	C4	C1	O3	14.7	0.0
C9	C10	C4	H10	180.0	180.0
C4	C10	C9	O11	220.8	257.1
C4	C10	C9	H9	101.2	137.4
O2	C1	C4	C10	196.4	180.0
C4	C1	O2	O3	178.3	180.1
O3	C1	C4	C10	14.7	0.0
C4	C1	O3	O2	181.8	179.9
O3	C1	O2	HO2	1.7	360.0
HO2	O2	C1	O3	1.7	360.0
C10	C9	C8	H8	169.1	69.9
C8	C9	C10	O11	121.9	120.0
C8	C9	C10	H9	241.5	239.7
C4	C10	C9	H10	180.0	180.0
O11	C9	C10	H9	119.6	119.7
C10	C9	O11	H11	302.8	300.0
C4	C10	H10	C9	180.0	180.0
H10	C10	C9	O11	40.8	77.1
H10	C10	C9	H9	281.2	317.4
O11	C9	C8	H8	290.9	190.0
C8	C9	O11	C10	237.3	239.3
C8	C9	O11	H9	118.5	119.5
O11	C9	C10	H10	40.8	77.1
C10	C9	O11	H9	241.3	240.3
H9	C9	C8	H8	50.4	309.6
C8	C9	H9	C10	120.6	120.9
C8	C9	H9	O11	240.2	240.6
H9	C9	C10	H10	281.2	317.4
C10	C9	H9	O11	119.6	119.7
H9	C9	O11	H11	61.5	59.7
H11	O11	C9	H9	61.5	59.7