PDB Chemical Component SKF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SKF
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C4 |
C5 |
1.389 |
1.380 |
C4 |
C9 |
1.388 |
1.385 |
C4 |
HC4 |
1.103 |
1.080 |
C5 |
C6 |
1.385 |
1.383 |
C5 |
HC5 |
1.103 |
1.081 |
C6 |
C7 |
1.382 |
1.379 |
C6 |
S |
1.756 |
1.762 |
C7 |
C8 |
1.386 |
1.387 |
C7 |
HC7 |
1.103 |
1.080 |
S |
O1 |
1.444 |
1.420 |
S |
O2 |
1.440 |
1.422 |
S |
N |
1.574 |
1.655 |
C8 |
C9 |
1.394 |
1.378 |
C8 |
C1 |
1.515 |
1.506 |
C9 |
C3 |
1.508 |
1.509 |
N |
H1N |
1.019 |
0.970 |
N |
H2N |
1.020 |
0.970 |
C1 |
N1 |
1.483 |
1.464 |
C1 |
HC11 |
1.115 |
1.089 |
C1 |
HC12 |
1.115 |
1.090 |
C2 |
C3 |
1.519 |
1.529 |
C2 |
N1 |
1.486 |
1.469 |
C2 |
HC21 |
1.116 |
1.090 |
C2 |
HC22 |
1.115 |
1.090 |
C3 |
HC31 |
1.115 |
1.090 |
C3 |
HC32 |
1.115 |
1.090 |
N1 |
HN1 |
1.019 |
1.010 |
Bond Angles for SKF
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C5 |
C4 |
C9 |
120.4 |
120.2 |
C5 |
C4 |
HC4 |
119.9 |
119.9 |
C4 |
C5 |
C6 |
119.6 |
119.9 |
C4 |
C5 |
HC5 |
120.3 |
120.0 |
C9 |
C4 |
HC4 |
119.8 |
119.9 |
C4 |
C9 |
C8 |
119.7 |
120.0 |
C4 |
C9 |
C3 |
120.0 |
119.0 |
C6 |
C5 |
HC5 |
120.1 |
120.1 |
C5 |
C6 |
C7 |
120.3 |
120.0 |
C5 |
C6 |
S |
119.6 |
120.0 |
C7 |
C6 |
S |
120.1 |
120.1 |
C6 |
C7 |
C8 |
120.3 |
120.3 |
C6 |
C7 |
HC7 |
119.7 |
119.9 |
C6 |
S |
O1 |
111.0 |
105.9 |
C6 |
S |
O2 |
112.4 |
105.7 |
C6 |
S |
N |
106.8 |
107.4 |
C8 |
C7 |
HC7 |
120.0 |
119.8 |
C7 |
C8 |
C9 |
119.7 |
119.7 |
C7 |
C8 |
C1 |
120.0 |
118.8 |
O1 |
S |
O2 |
109.0 |
125.3 |
O1 |
S |
N |
109.1 |
105.8 |
O2 |
S |
N |
108.5 |
105.8 |
S |
N |
H1N |
106.8 |
120.0 |
S |
N |
H2N |
113.2 |
120.0 |
C9 |
C8 |
C1 |
120.2 |
121.5 |
C8 |
C9 |
C3 |
119.4 |
121.0 |
C8 |
C1 |
N1 |
114.1 |
110.7 |
C8 |
C1 |
HC11 |
110.5 |
109.3 |
C8 |
C1 |
HC12 |
110.5 |
109.2 |
C9 |
C3 |
C2 |
110.1 |
109.5 |
C9 |
C3 |
HC31 |
112.0 |
109.5 |
C9 |
C3 |
HC32 |
112.0 |
109.5 |
H1N |
N |
H2N |
113.3 |
119.9 |
N1 |
C1 |
HC11 |
110.5 |
109.3 |
N1 |
C1 |
HC12 |
110.5 |
109.2 |
C1 |
N1 |
C2 |
114.0 |
106.8 |
C1 |
N1 |
HN1 |
110.6 |
106.7 |
HC11 |
C1 |
HC12 |
99.8 |
109.2 |
C3 |
C2 |
N1 |
106.1 |
108.7 |
C3 |
C2 |
HC21 |
113.5 |
109.7 |
C3 |
C2 |
HC22 |
113.5 |
109.5 |
C2 |
C3 |
HC31 |
112.0 |
109.5 |
C2 |
C3 |
HC32 |
111.9 |
109.5 |
N1 |
C2 |
HC21 |
113.5 |
109.6 |
N1 |
C2 |
HC22 |
113.5 |
109.6 |
C2 |
N1 |
HN1 |
110.5 |
106.6 |
HC21 |
C2 |
HC22 |
96.9 |
109.7 |
HC31 |
C3 |
HC32 |
98.4 |
109.4 |
Torsion Angles for SKF
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C9 |
C4 |
C5 |
HC4 |
180.0 |
180.0 |
C5 |
C4 |
C9 |
C8 |
0.0 |
360.0 |
C5 |
C4 |
C9 |
C3 |
169.2 |
179.9 |
C6 |
C5 |
C4 |
HC5 |
180.0 |
179.9 |
C4 |
C5 |
C6 |
C7 |
360.0 |
0.3 |
C4 |
C5 |
C6 |
S |
180.2 |
180.0 |
C5 |
C4 |
C9 |
HC4 |
180.0 |
180.0 |
C9 |
C4 |
C5 |
C6 |
0.0 |
360.0 |
C9 |
C4 |
C5 |
HC5 |
180.0 |
180.1 |
C7 |
C8 |
C9 |
C4 |
359.9 |
359.7 |
C4 |
C9 |
C8 |
C1 |
184.5 |
180.1 |
C8 |
C9 |
C4 |
C3 |
190.9 |
180.1 |
C4 |
C9 |
C3 |
C2 |
151.7 |
164.6 |
C4 |
C9 |
C3 |
HC31 |
276.9 |
284.7 |
C4 |
C9 |
C3 |
HC32 |
26.4 |
44.6 |
C5 |
C4 |
HC4 |
C9 |
180.0 |
180.0 |
HC4 |
C4 |
C5 |
C6 |
180.1 |
179.9 |
HC4 |
C4 |
C5 |
HC5 |
0.0 |
0.1 |
HC4 |
C4 |
C9 |
C8 |
180.0 |
180.0 |
HC4 |
C4 |
C9 |
C3 |
349.1 |
360.0 |
C6 |
C5 |
C4 |
C9 |
0.0 |
360.0 |
C6 |
C5 |
C4 |
HC4 |
180.1 |
179.9 |
C4 |
C5 |
C6 |
HC5 |
180.0 |
180.1 |
C7 |
C6 |
C5 |
S |
179.8 |
180.3 |
C5 |
C6 |
C7 |
C8 |
359.9 |
359.4 |
C5 |
C6 |
C7 |
HC7 |
179.9 |
179.7 |
C5 |
C6 |
S |
O1 |
24.0 |
337.4 |
C5 |
C6 |
S |
O2 |
261.7 |
202.7 |
C5 |
C6 |
S |
N |
142.8 |
90.1 |
HC5 |
C5 |
C4 |
C9 |
180.0 |
180.1 |
HC5 |
C5 |
C4 |
HC4 |
0.0 |
0.1 |
C4 |
C5 |
HC5 |
C6 |
180.0 |
179.9 |
HC5 |
C5 |
C6 |
C7 |
180.0 |
180.2 |
HC5 |
C5 |
C6 |
S |
0.2 |
359.9 |
C7 |
C6 |
C5 |
HC5 |
180.0 |
180.2 |
C5 |
C6 |
C7 |
S |
180.2 |
179.7 |
C7 |
C6 |
S |
O1 |
204.2 |
157.1 |
C7 |
C6 |
S |
O2 |
81.8 |
22.4 |
C7 |
C6 |
S |
N |
323.0 |
269.8 |
C8 |
C7 |
C6 |
HC7 |
180.0 |
179.7 |
C6 |
C7 |
C8 |
C9 |
0.1 |
0.6 |
C6 |
C7 |
C8 |
C1 |
175.5 |
180.2 |
S |
C6 |
C5 |
HC5 |
0.2 |
359.9 |
C5 |
C6 |
S |
C7 |
179.8 |
180.3 |
S |
C6 |
C7 |
C8 |
179.7 |
179.7 |
S |
C6 |
C7 |
HC7 |
359.7 |
360.0 |
O1 |
S |
C6 |
O2 |
122.4 |
134.7 |
O1 |
S |
C6 |
N |
241.2 |
247.3 |
O2 |
S |
C6 |
N |
118.9 |
112.6 |
C6 |
S |
N |
H1N |
180.0 |
179.9 |
C6 |
S |
N |
H2N |
54.7 |
359.6 |
C4 |
C9 |
C8 |
C7 |
359.9 |
359.7 |
C8 |
C7 |
C6 |
S |
179.7 |
179.7 |
C6 |
C7 |
C8 |
HC7 |
180.0 |
180.3 |
C9 |
C8 |
C7 |
C1 |
184.6 |
180.4 |
C7 |
C8 |
C9 |
C3 |
190.7 |
179.8 |
C7 |
C8 |
C1 |
N1 |
170.1 |
159.7 |
C7 |
C8 |
C1 |
HC11 |
295.3 |
39.3 |
C7 |
C8 |
C1 |
HC12 |
44.9 |
280.0 |
HC7 |
C7 |
C6 |
S |
359.7 |
360.0 |
C6 |
C7 |
HC7 |
C8 |
180.0 |
179.7 |
HC7 |
C7 |
C8 |
C9 |
180.1 |
180.3 |
HC7 |
C7 |
C8 |
C1 |
355.5 |
359.9 |
C6 |
S |
O1 |
O2 |
235.7 |
236.9 |
C6 |
S |
O1 |
N |
117.4 |
113.8 |
O2 |
S |
O1 |
N |
241.6 |
236.9 |
O1 |
S |
N |
H1N |
300.0 |
292.6 |
O1 |
S |
N |
H2N |
174.7 |
112.4 |
C6 |
S |
O2 |
O1 |
123.4 |
123.2 |
C6 |
S |
O2 |
N |
242.1 |
246.2 |
O1 |
S |
O2 |
N |
118.7 |
123.1 |
O2 |
S |
N |
H1N |
58.7 |
67.4 |
O2 |
S |
N |
H2N |
293.3 |
247.1 |
C6 |
S |
N |
O1 |
240.0 |
247.3 |
C6 |
S |
N |
O2 |
121.3 |
112.6 |
O1 |
S |
N |
O2 |
241.3 |
225.3 |
H1N |
N |
S |
H2N |
125.3 |
180.3 |
C8 |
C9 |
C4 |
HC4 |
180.0 |
180.0 |
C4 |
C9 |
C8 |
C3 |
169.2 |
179.9 |
C9 |
C8 |
C7 |
HC7 |
180.1 |
180.3 |
C7 |
C8 |
C9 |
C1 |
175.4 |
179.6 |
C9 |
C8 |
C1 |
N1 |
345.5 |
339.4 |
C9 |
C8 |
C1 |
HC11 |
110.7 |
218.9 |
C9 |
C8 |
C1 |
HC12 |
220.2 |
99.6 |
C8 |
C9 |
C3 |
C2 |
320.8 |
344.5 |
C8 |
C9 |
C3 |
HC31 |
86.1 |
104.6 |
C8 |
C9 |
C3 |
HC32 |
195.6 |
224.5 |
C1 |
C8 |
C7 |
HC7 |
355.5 |
359.9 |
C7 |
C8 |
C1 |
C9 |
184.6 |
180.4 |
C1 |
C8 |
C9 |
C3 |
15.3 |
0.2 |
N1 |
C1 |
C8 |
HC11 |
234.8 |
120.4 |
N1 |
C1 |
C8 |
HC12 |
125.2 |
239.8 |
C8 |
C1 |
N1 |
C2 |
39.9 |
56.4 |
C8 |
C1 |
N1 |
HN1 |
274.7 |
170.1 |
HC11 |
C1 |
C8 |
HC12 |
250.5 |
119.3 |
C3 |
C9 |
C4 |
HC4 |
349.1 |
360.0 |
C4 |
C9 |
C3 |
C8 |
190.8 |
180.1 |
C3 |
C9 |
C8 |
C1 |
15.3 |
0.2 |
C9 |
C3 |
C2 |
N1 |
60.9 |
51.8 |
C9 |
C3 |
C2 |
HC21 |
186.2 |
171.6 |
C9 |
C3 |
C2 |
HC22 |
295.6 |
292.1 |
C2 |
C3 |
C9 |
HC31 |
234.7 |
240.0 |
C2 |
C3 |
C9 |
HC32 |
125.2 |
120.0 |
HC31 |
C3 |
C9 |
HC32 |
250.5 |
240.1 |
S |
N |
H1N |
H2N |
234.7 |
179.7 |
S |
N |
H2N |
H1N |
121.7 |
180.3 |
C8 |
C1 |
N1 |
HC11 |
125.2 |
239.6 |
C8 |
C1 |
N1 |
HC12 |
234.8 |
120.3 |
HC11 |
C1 |
N1 |
HC12 |
109.5 |
240.7 |
C3 |
C2 |
N1 |
C1 |
296.4 |
285.5 |
C1 |
N1 |
C2 |
HC21 |
171.2 |
165.6 |
C1 |
N1 |
C2 |
HC22 |
61.8 |
45.1 |
C2 |
N1 |
C1 |
HN1 |
125.2 |
246.3 |
C8 |
C1 |
HC11 |
N1 |
232.8 |
121.3 |
C8 |
C1 |
HC11 |
HC12 |
116.4 |
240.6 |
N1 |
C1 |
HC11 |
HC12 |
243.6 |
119.3 |
HC11 |
C1 |
N1 |
C2 |
274.7 |
176.8 |
HC11 |
C1 |
N1 |
HN1 |
149.5 |
290.5 |
C8 |
C1 |
HC12 |
N1 |
127.2 |
238.8 |
C8 |
C1 |
HC12 |
HC11 |
243.6 |
119.4 |
N1 |
C1 |
HC12 |
HC11 |
116.4 |
240.6 |
HC12 |
C1 |
N1 |
C2 |
165.2 |
296.1 |
HC12 |
C1 |
N1 |
HN1 |
39.9 |
49.8 |
C9 |
C3 |
C2 |
HC31 |
125.3 |
120.0 |
C9 |
C3 |
C2 |
HC32 |
234.7 |
240.0 |
C1 |
N1 |
C2 |
C3 |
296.4 |
285.5 |
N1 |
C2 |
C3 |
HC21 |
234.7 |
240.2 |
N1 |
C2 |
C3 |
HC22 |
125.3 |
119.7 |
C3 |
C2 |
N1 |
HN1 |
61.7 |
171.7 |
HC21 |
C2 |
C3 |
HC22 |
250.6 |
239.5 |
HC31 |
C3 |
C2 |
HC32 |
109.4 |
120.0 |
C2 |
N1 |
C1 |
HC11 |
274.7 |
176.8 |
C2 |
N1 |
C1 |
HC12 |
165.2 |
296.1 |
C1 |
N1 |
C2 |
HN1 |
234.7 |
113.8 |
C3 |
C2 |
N1 |
HC21 |
125.3 |
119.8 |
C3 |
C2 |
N1 |
HC22 |
234.7 |
240.3 |
N1 |
C2 |
C3 |
HC31 |
295.6 |
291.8 |
N1 |
C2 |
C3 |
HC32 |
186.2 |
171.8 |
HC21 |
C2 |
N1 |
HC22 |
109.4 |
120.5 |
C3 |
C2 |
HC21 |
N1 |
238.8 |
240.8 |
C3 |
C2 |
HC21 |
HC22 |
119.4 |
120.3 |
HC21 |
C2 |
C3 |
HC31 |
60.9 |
51.6 |
HC21 |
C2 |
C3 |
HC32 |
311.5 |
291.6 |
N1 |
C2 |
HC21 |
HC22 |
240.6 |
239.6 |
HC21 |
C2 |
N1 |
HN1 |
296.5 |
51.8 |
C3 |
C2 |
HC22 |
N1 |
121.3 |
119.2 |
C3 |
C2 |
HC22 |
HC21 |
240.7 |
239.6 |
HC22 |
C2 |
C3 |
HC31 |
170.3 |
172.1 |
HC22 |
C2 |
C3 |
HC32 |
60.9 |
52.1 |
N1 |
C2 |
HC22 |
HC21 |
119.4 |
120.4 |
HC22 |
C2 |
N1 |
HN1 |
187.1 |
291.4 |
C9 |
C3 |
HC31 |
C2 |
235.8 |
240.0 |
C9 |
C3 |
HC31 |
HC32 |
117.9 |
120.0 |
HC31 |
C3 |
C2 |
N1 |
295.6 |
291.8 |
HC31 |
C3 |
C2 |
HC21 |
60.9 |
51.6 |
HC31 |
C3 |
C2 |
HC22 |
170.3 |
172.1 |
C2 |
C3 |
HC31 |
HC32 |
242.2 |
240.0 |
C9 |
C3 |
HC32 |
C2 |
124.2 |
120.0 |
C9 |
C3 |
HC32 |
HC31 |
242.1 |
240.0 |
HC32 |
C3 |
C2 |
N1 |
186.2 |
171.8 |
HC32 |
C3 |
C2 |
HC21 |
311.5 |
291.6 |
HC32 |
C3 |
C2 |
HC22 |
60.9 |
52.1 |
C2 |
C3 |
HC32 |
HC31 |
117.9 |
120.0 |
HN1 |
N1 |
C1 |
HC11 |
149.5 |
290.5 |
HN1 |
N1 |
C1 |
HC12 |
39.9 |
49.8 |
C1 |
N1 |
HN1 |
C2 |
127.2 |
246.2 |
HN1 |
N1 |
C2 |
HC21 |
296.5 |
51.8 |
HN1 |
N1 |
C2 |
HC22 |
187.1 |
291.4 |