PDB Chemical Component SKE
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SKE
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C6 |
S |
1.785 |
1.762 |
| O2 |
S |
1.505 |
1.421 |
| S |
N4 |
1.622 |
1.656 |
| S |
O1 |
1.481 |
1.421 |
| N1 |
C1 |
1.348 |
1.379 |
| C1 |
N6 |
1.342 |
1.364 |
| C1 |
N2 |
1.330 |
1.316 |
| C11 |
F1 |
1.350 |
1.351 |
| N1 |
HN1 |
1.000 |
0.970 |
| N1 |
HN1A |
1.000 |
0.970 |
| N2 |
C2 |
1.340 |
1.339 |
| N5 |
C2 |
1.337 |
1.311 |
| C2 |
N3 |
1.357 |
1.394 |
| F2 |
C15 |
1.354 |
1.351 |
| N3 |
C3 |
1.351 |
1.398 |
| C4 |
C3 |
1.405 |
1.389 |
| C3 |
C8 |
1.406 |
1.389 |
| N3 |
HN3 |
1.000 |
0.969 |
| O3 |
C9 |
1.239 |
1.216 |
| C4 |
C5 |
1.402 |
1.381 |
| C4 |
H4 |
1.080 |
1.080 |
| N4 |
HN4 |
1.000 |
0.970 |
| N4 |
HN4A |
1.000 |
0.970 |
| C5 |
C6 |
1.391 |
1.383 |
| C5 |
H5 |
1.080 |
1.080 |
| N6 |
N5 |
1.259 |
1.404 |
| C6 |
C7 |
1.397 |
1.383 |
| C9 |
N6 |
1.351 |
1.349 |
| C8 |
C7 |
1.399 |
1.380 |
| C7 |
H7 |
1.080 |
1.080 |
| C8 |
H8 |
1.080 |
1.081 |
| C9 |
C10 |
1.541 |
1.473 |
| C15 |
C10 |
1.394 |
1.401 |
| C10 |
C11 |
1.398 |
1.399 |
| C11 |
C12 |
1.399 |
1.382 |
| C13 |
C12 |
1.398 |
1.383 |
| C12 |
H12 |
1.080 |
1.080 |
| C14 |
C13 |
1.399 |
1.383 |
| C13 |
H13 |
1.080 |
1.081 |
| C15 |
C14 |
1.395 |
1.382 |
| C14 |
H14 |
1.080 |
1.080 |
Bond Angles for SKE
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2 |
S |
N4 |
108.5 |
106.4 |
| O1 |
S |
N4 |
110.1 |
106.4 |
| S |
N4 |
HN4 |
109.5 |
120.0 |
| S |
N4 |
HN4A |
109.5 |
120.0 |
| N1 |
C1 |
N6 |
127.5 |
126.2 |
| N1 |
C1 |
N2 |
124.7 |
126.1 |
| N2 |
C1 |
N6 |
107.9 |
107.7 |
| C1 |
N6 |
N5 |
109.5 |
106.3 |
| C1 |
N2 |
C2 |
105.8 |
109.7 |
| HN1 |
N1 |
HN1A |
109.5 |
119.9 |
| N2 |
C2 |
N3 |
123.9 |
125.4 |
| C2 |
N3 |
C3 |
127.2 |
120.0 |
| C2 |
N3 |
HN3 |
116.4 |
120.0 |
| F2 |
C15 |
C10 |
120.2 |
120.1 |
| F2 |
C15 |
C14 |
120.0 |
120.1 |
| N3 |
C3 |
C8 |
118.0 |
120.1 |
| C4 |
C3 |
C8 |
118.7 |
119.8 |
| C3 |
C8 |
C7 |
120.3 |
120.0 |
| C3 |
C8 |
H8 |
119.9 |
120.0 |
| O3 |
C9 |
N6 |
122.8 |
120.0 |
| O3 |
C9 |
C10 |
122.0 |
120.0 |
| C5 |
C4 |
H4 |
119.6 |
120.1 |
| C4 |
C5 |
C6 |
120.2 |
120.1 |
| C4 |
C5 |
H5 |
119.9 |
119.9 |
| HN4 |
N4 |
HN4A |
109.5 |
120.0 |
| C6 |
C5 |
H5 |
119.9 |
120.0 |
| C5 |
C6 |
C7 |
119.6 |
120.1 |
| C6 |
C7 |
H7 |
119.7 |
119.9 |
| C8 |
C7 |
H7 |
119.7 |
120.0 |
| C9 |
C10 |
C11 |
119.9 |
120.2 |
| C10 |
C11 |
C12 |
120.0 |
119.8 |
| C11 |
C12 |
H12 |
120.2 |
119.9 |
| C13 |
C12 |
H12 |
120.2 |
120.0 |
| C14 |
C13 |
H13 |
119.9 |
119.8 |
| C15 |
C14 |
H14 |
120.0 |
119.9 |
Torsion Angles for SKE
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
S |
N4 |
HN4 |
180.0 |
240.0 |
| C6 |
S |
N4 |
HN4A |
300.0 |
60.0 |
| O1 |
S |
O2 |
N4 |
121.3 |
122.9 |
| O2 |
S |
N4 |
HN4 |
61.8 |
126.5 |
| O2 |
S |
N4 |
HN4A |
181.8 |
306.5 |
| HN4 |
N4 |
S |
HN4A |
240.0 |
180.1 |
| O2 |
S |
O1 |
N4 |
239.6 |
237.1 |
| O1 |
S |
N4 |
HN4 |
299.8 |
353.6 |
| O1 |
S |
N4 |
HN4A |
59.8 |
173.6 |
| N2 |
C1 |
N1 |
N6 |
179.2 |
180.3 |
| N1 |
C1 |
N6 |
N5 |
180.8 |
180.3 |
| N1 |
C1 |
N2 |
C2 |
180.8 |
179.7 |
| N1 |
C1 |
N6 |
N2 |
179.3 |
180.2 |
| N6 |
C1 |
N2 |
C2 |
0.1 |
360.0 |
| O3 |
C9 |
N6 |
C1 |
358.6 |
4.9 |
| N1 |
C1 |
N2 |
N6 |
180.7 |
179.8 |
| N2 |
C1 |
N6 |
N5 |
1.4 |
0.0 |
| C1 |
N2 |
C2 |
N3 |
180.4 |
180.0 |
| HN1 |
N1 |
C1 |
N6 |
180.8 |
0.0 |
| HN1 |
N1 |
C1 |
N2 |
0.0 |
180.3 |
| HN1A |
N1 |
C1 |
N6 |
300.8 |
180.0 |
| HN1A |
N1 |
C1 |
N2 |
120.0 |
0.3 |
| C2 |
N2 |
C1 |
N6 |
0.1 |
360.0 |
| N2 |
C2 |
N3 |
C3 |
189.1 |
357.4 |
| N2 |
C2 |
N3 |
HN3 |
9.1 |
177.3 |
| C1 |
N6 |
N5 |
C2 |
357.6 |
0.0 |
| N5 |
C2 |
N3 |
HN3 |
191.5 |
357.3 |
| C2 |
N3 |
C3 |
C8 |
168.1 |
30.5 |
| F2 |
C15 |
C14 |
H14 |
0.8 |
0.1 |
| C2 |
N3 |
C3 |
HN3 |
180.0 |
179.9 |
| C4 |
C3 |
N3 |
C8 |
180.3 |
180.3 |
| N3 |
C3 |
C8 |
C7 |
180.4 |
180.3 |
| N3 |
C3 |
C8 |
H8 |
0.4 |
0.1 |
| N3 |
C3 |
C4 |
C8 |
179.7 |
179.7 |
| C4 |
C3 |
C8 |
C7 |
0.1 |
360.0 |
| C4 |
C3 |
C8 |
H8 |
180.1 |
179.8 |
| C3 |
C8 |
C7 |
H7 |
179.4 |
180.0 |
| C2 |
N3 |
HN3 |
C3 |
180.0 |
180.1 |
| HN3 |
N3 |
C3 |
C8 |
348.1 |
210.6 |
| O3 |
C9 |
C10 |
C11 |
126.8 |
265.2 |
| C5 |
C4 |
C3 |
C8 |
0.0 |
0.1 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
179.9 |
| C4 |
C5 |
C6 |
C7 |
359.2 |
0.0 |
| H4 |
C4 |
C3 |
C8 |
180.0 |
180.0 |
| H4 |
C4 |
C5 |
C6 |
180.3 |
180.0 |
| H4 |
C4 |
C5 |
H5 |
0.3 |
0.1 |
| S |
N4 |
HN4 |
HN4A |
120.0 |
179.9 |
| S |
N4 |
HN4A |
HN4 |
240.0 |
180.1 |
| C6 |
C5 |
C4 |
H4 |
180.3 |
180.0 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.1 |
| C5 |
C6 |
C7 |
H7 |
180.9 |
180.0 |
| H5 |
C5 |
C4 |
H4 |
0.3 |
0.1 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
179.9 |
| H5 |
C5 |
C6 |
C7 |
179.3 |
180.0 |
| O3 |
C9 |
N6 |
N5 |
174.8 |
184.9 |
| C3 |
C8 |
C7 |
C6 |
359.4 |
0.0 |
| C7 |
C6 |
C5 |
H5 |
179.3 |
180.0 |
| C8 |
C7 |
C6 |
H7 |
180.0 |
180.0 |
| O3 |
C9 |
N6 |
C10 |
171.2 |
180.0 |
| C3 |
C8 |
C7 |
H8 |
180.0 |
179.8 |
| C6 |
C7 |
C8 |
H7 |
180.0 |
180.0 |
| C3 |
C8 |
H8 |
C7 |
180.0 |
180.2 |
| H8 |
C8 |
C7 |
H7 |
359.4 |
0.2 |
| F2 |
C15 |
C10 |
C9 |
2.0 |
0.0 |
| O3 |
C9 |
C10 |
N6 |
188.7 |
180.0 |
| C9 |
C10 |
C11 |
C12 |
177.9 |
180.0 |
| F2 |
C15 |
C10 |
C14 |
179.6 |
180.3 |
| F2 |
C15 |
C10 |
C11 |
178.6 |
179.7 |
| C10 |
C11 |
C12 |
H12 |
178.9 |
180.0 |
| C13 |
C12 |
C11 |
H12 |
180.0 |
180.0 |
| C11 |
C12 |
C13 |
H12 |
180.0 |
180.0 |
| F2 |
C15 |
C14 |
C13 |
180.8 |
180.2 |
| C14 |
C13 |
C12 |
H12 |
180.5 |
180.0 |
| H13 |
C13 |
C12 |
H12 |
0.5 |
360.0 |
| F2 |
C15 |
C14 |
C10 |
180.4 |
179.7 |
| C15 |
C14 |
C13 |
H13 |
179.9 |
179.8 |
| H14 |
C14 |
C13 |
H13 |
359.9 |
359.9 |