PDB Chemical Component SKA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SKA
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
CL4 |
C4 |
1.732 |
1.736 |
C4 |
C5 |
1.394 |
1.387 |
C4 |
C3 |
1.395 |
1.383 |
C5 |
C11 |
1.531 |
1.506 |
C5 |
C6 |
1.395 |
1.379 |
C11 |
N10 |
1.474 |
1.465 |
C11 |
H111 |
1.100 |
1.090 |
C11 |
H112 |
1.100 |
1.090 |
N10 |
C9 |
1.470 |
1.470 |
N10 |
H10 |
1.000 |
1.009 |
C9 |
C8 |
1.531 |
1.529 |
C9 |
H91 |
1.100 |
1.091 |
C9 |
H92 |
1.099 |
1.090 |
C8 |
C6 |
1.532 |
1.509 |
C8 |
H81 |
1.100 |
1.090 |
C8 |
H82 |
1.100 |
1.089 |
C6 |
C1 |
1.389 |
1.385 |
C1 |
C2 |
1.393 |
1.381 |
C1 |
H1 |
1.080 |
1.081 |
C2 |
C3 |
1.389 |
1.384 |
C2 |
H2 |
1.080 |
1.080 |
C3 |
CL3 |
1.730 |
1.736 |
Bond Angles for SKA
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
CL4 |
C4 |
C5 |
119.5 |
119.9 |
CL4 |
C4 |
C3 |
119.6 |
119.8 |
C5 |
C4 |
C3 |
120.9 |
120.3 |
C4 |
C5 |
C11 |
121.9 |
118.8 |
C4 |
C5 |
C6 |
118.7 |
119.7 |
C4 |
C3 |
C2 |
119.8 |
119.9 |
C4 |
C3 |
CL3 |
121.9 |
120.1 |
C11 |
C5 |
C6 |
119.4 |
121.5 |
C5 |
C11 |
N10 |
111.4 |
110.8 |
C5 |
C11 |
H111 |
108.4 |
109.2 |
C5 |
C11 |
H112 |
108.9 |
109.3 |
C5 |
C6 |
C8 |
122.7 |
121.0 |
C5 |
C6 |
C1 |
120.5 |
120.1 |
N10 |
C11 |
H111 |
108.4 |
109.2 |
N10 |
C11 |
H112 |
108.9 |
109.2 |
C11 |
N10 |
C9 |
111.1 |
106.6 |
C11 |
N10 |
H10 |
108.9 |
106.7 |
H111 |
C11 |
H112 |
111.0 |
109.2 |
C9 |
N10 |
H10 |
108.9 |
106.7 |
N10 |
C9 |
C8 |
108.5 |
108.8 |
N10 |
C9 |
H91 |
110.0 |
109.6 |
N10 |
C9 |
H92 |
109.8 |
109.6 |
C8 |
C9 |
H91 |
110.0 |
109.6 |
C8 |
C9 |
H92 |
109.8 |
109.6 |
C9 |
C8 |
C6 |
110.5 |
109.4 |
C9 |
C8 |
H81 |
108.9 |
109.5 |
C9 |
C8 |
H82 |
109.1 |
109.5 |
H91 |
C9 |
H92 |
108.8 |
109.7 |
C6 |
C8 |
H81 |
108.9 |
109.4 |
C6 |
C8 |
H82 |
109.1 |
109.5 |
C8 |
C6 |
C1 |
116.8 |
119.0 |
H81 |
C8 |
H82 |
110.3 |
109.5 |
C6 |
C1 |
C2 |
120.4 |
120.3 |
C6 |
C1 |
H1 |
119.8 |
119.9 |
C2 |
C1 |
H1 |
119.8 |
119.9 |
C1 |
C2 |
C3 |
119.6 |
119.8 |
C1 |
C2 |
H2 |
120.2 |
120.1 |
C3 |
C2 |
H2 |
120.2 |
120.1 |
C2 |
C3 |
CL3 |
118.3 |
120.0 |
Torsion Angles for SKA
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C5 |
C4 |
CL4 |
C3 |
179.4 |
180.3 |
CL4 |
C4 |
C5 |
C11 |
359.4 |
359.9 |
CL4 |
C4 |
C5 |
C6 |
180.6 |
180.3 |
CL4 |
C4 |
C3 |
C2 |
179.4 |
179.7 |
CL4 |
C4 |
C3 |
CL3 |
359.4 |
360.0 |
CL4 |
C4 |
C5 |
C3 |
180.6 |
179.7 |
C5 |
C4 |
C3 |
C2 |
360.0 |
359.4 |
C5 |
C4 |
C3 |
CL3 |
179.9 |
179.7 |
C11 |
C5 |
C4 |
C6 |
178.9 |
179.6 |
C4 |
C5 |
C11 |
N10 |
162.1 |
159.7 |
C4 |
C5 |
C11 |
H111 |
42.9 |
39.4 |
C4 |
C5 |
C11 |
H112 |
282.1 |
280.0 |
C4 |
C5 |
C6 |
C8 |
180.5 |
179.8 |
C4 |
C5 |
C6 |
C1 |
0.0 |
359.7 |
CL4 |
C4 |
C3 |
C5 |
179.4 |
180.3 |
C3 |
C4 |
C5 |
C11 |
178.9 |
180.2 |
C3 |
C4 |
C5 |
C6 |
0.0 |
0.6 |
C1 |
C2 |
C3 |
C4 |
0.0 |
0.3 |
C4 |
C3 |
C2 |
H2 |
180.0 |
180.2 |
C2 |
C3 |
C4 |
CL3 |
180.1 |
179.7 |
C11 |
C5 |
C4 |
C3 |
178.9 |
180.2 |
C4 |
C5 |
C11 |
C6 |
181.2 |
180.4 |
C11 |
C5 |
C6 |
C8 |
1.6 |
0.1 |
C11 |
C5 |
C6 |
C1 |
181.1 |
180.1 |
N10 |
C11 |
C5 |
H111 |
119.2 |
120.3 |
N10 |
C11 |
C5 |
H112 |
240.0 |
239.6 |
C5 |
C11 |
N10 |
C9 |
53.8 |
56.4 |
C5 |
C11 |
N10 |
H10 |
173.8 |
170.2 |
H111 |
C11 |
C5 |
H112 |
120.8 |
119.4 |
C6 |
C5 |
C4 |
C3 |
0.0 |
0.6 |
C4 |
C5 |
C6 |
C11 |
178.9 |
179.6 |
C6 |
C5 |
C11 |
N10 |
340.9 |
339.3 |
C6 |
C5 |
C11 |
H111 |
221.7 |
219.0 |
C6 |
C5 |
C11 |
H112 |
100.9 |
99.6 |
C9 |
C8 |
C6 |
C5 |
343.5 |
344.6 |
C5 |
C6 |
C8 |
H81 |
103.1 |
104.6 |
C5 |
C6 |
C8 |
H82 |
223.5 |
224.6 |
C8 |
C6 |
C5 |
C1 |
180.4 |
180.1 |
C5 |
C6 |
C1 |
C2 |
360.0 |
0.0 |
C5 |
C6 |
C1 |
H1 |
180.0 |
180.0 |
N10 |
C11 |
C5 |
C6 |
340.9 |
339.3 |
C5 |
C11 |
N10 |
H111 |
240.8 |
239.7 |
C5 |
C11 |
N10 |
H112 |
120.0 |
120.4 |
H111 |
C11 |
N10 |
H112 |
239.2 |
240.6 |
C9 |
N10 |
C11 |
H10 |
240.0 |
246.2 |
C11 |
N10 |
C9 |
C8 |
289.6 |
285.4 |
C11 |
N10 |
C9 |
H91 |
169.3 |
165.6 |
C11 |
N10 |
C9 |
H92 |
49.6 |
45.2 |
H111 |
C11 |
C5 |
C6 |
221.7 |
219.0 |
C5 |
C11 |
H111 |
N10 |
121.0 |
121.2 |
C5 |
C11 |
H111 |
H112 |
240.5 |
240.6 |
N10 |
C11 |
H111 |
H112 |
119.5 |
119.4 |
H111 |
C11 |
N10 |
C9 |
173.0 |
176.7 |
H111 |
C11 |
N10 |
H10 |
293.0 |
290.4 |
H112 |
C11 |
C5 |
C6 |
100.9 |
99.6 |
C5 |
C11 |
H112 |
N10 |
238.4 |
238.7 |
C5 |
C11 |
H112 |
H111 |
119.2 |
119.4 |
N10 |
C11 |
H112 |
H111 |
240.8 |
240.6 |
H112 |
C11 |
N10 |
C9 |
293.8 |
296.1 |
H112 |
C11 |
N10 |
H10 |
53.8 |
49.8 |
C9 |
N10 |
C11 |
H111 |
173.0 |
176.7 |
C9 |
N10 |
C11 |
H112 |
293.8 |
296.1 |
C11 |
N10 |
C9 |
H10 |
120.0 |
113.8 |
C8 |
C9 |
N10 |
H91 |
120.4 |
119.8 |
C8 |
C9 |
N10 |
H92 |
240.0 |
240.2 |
N10 |
C9 |
C8 |
C6 |
48.7 |
51.8 |
N10 |
C9 |
C8 |
H81 |
289.1 |
291.9 |
N10 |
C9 |
C8 |
H82 |
168.7 |
171.8 |
H91 |
C9 |
N10 |
H92 |
119.7 |
120.4 |
H10 |
N10 |
C11 |
H111 |
293.0 |
290.4 |
H10 |
N10 |
C11 |
H112 |
53.8 |
49.8 |
C11 |
N10 |
H10 |
C9 |
238.6 |
246.3 |
H10 |
N10 |
C9 |
C8 |
169.6 |
171.6 |
H10 |
N10 |
C9 |
H91 |
49.2 |
51.8 |
H10 |
N10 |
C9 |
H92 |
289.6 |
291.4 |
C5 |
C6 |
C8 |
C9 |
343.5 |
344.6 |
C8 |
C9 |
N10 |
H10 |
169.6 |
171.6 |
N10 |
C9 |
C8 |
H91 |
239.7 |
240.2 |
N10 |
C9 |
C8 |
H92 |
120.0 |
119.8 |
H91 |
C9 |
C8 |
H92 |
240.4 |
239.6 |
C6 |
C8 |
C9 |
H81 |
119.6 |
120.0 |
C6 |
C8 |
C9 |
H82 |
240.0 |
240.0 |
C9 |
C8 |
C6 |
C1 |
163.9 |
164.7 |
H81 |
C8 |
C9 |
H82 |
120.4 |
120.0 |
H91 |
C9 |
N10 |
H10 |
49.2 |
51.8 |
N10 |
C9 |
H91 |
C8 |
119.5 |
119.3 |
N10 |
C9 |
H91 |
H92 |
239.7 |
239.6 |
C8 |
C9 |
H91 |
H92 |
120.2 |
120.3 |
H91 |
C9 |
C8 |
C6 |
169.1 |
171.6 |
H91 |
C9 |
C8 |
H81 |
49.5 |
51.7 |
H91 |
C9 |
C8 |
H82 |
289.1 |
291.6 |
H92 |
C9 |
N10 |
H10 |
289.6 |
291.4 |
N10 |
C9 |
H92 |
C8 |
240.8 |
240.7 |
N10 |
C9 |
H92 |
H91 |
120.4 |
120.4 |
C8 |
C9 |
H92 |
H91 |
239.6 |
239.7 |
H92 |
C9 |
C8 |
C6 |
288.7 |
292.0 |
H92 |
C9 |
C8 |
H81 |
169.1 |
172.1 |
H92 |
C9 |
C8 |
H82 |
48.7 |
52.0 |
C5 |
C6 |
C8 |
C1 |
179.6 |
179.9 |
C6 |
C8 |
C9 |
H91 |
169.1 |
171.6 |
C6 |
C8 |
C9 |
H92 |
288.7 |
292.0 |
C9 |
C8 |
C6 |
H81 |
240.4 |
240.0 |
C9 |
C8 |
C6 |
H82 |
120.0 |
120.0 |
H81 |
C8 |
C6 |
H82 |
239.5 |
240.0 |
C8 |
C6 |
C1 |
C2 |
179.5 |
179.9 |
C8 |
C6 |
C1 |
H1 |
359.5 |
359.9 |
H81 |
C8 |
C9 |
H91 |
49.5 |
51.7 |
H81 |
C8 |
C9 |
H92 |
169.1 |
172.1 |
C9 |
C8 |
H81 |
C6 |
120.6 |
119.9 |
C9 |
C8 |
H81 |
H82 |
240.3 |
239.9 |
C6 |
C8 |
H81 |
H82 |
119.7 |
120.0 |
H81 |
C8 |
C6 |
C1 |
283.5 |
284.7 |
H82 |
C8 |
C9 |
H91 |
289.1 |
291.6 |
H82 |
C8 |
C9 |
H92 |
48.7 |
52.0 |
C9 |
C8 |
H82 |
C6 |
239.1 |
240.0 |
C9 |
C8 |
H82 |
H81 |
119.5 |
120.1 |
C6 |
C8 |
H82 |
H81 |
240.4 |
240.0 |
H82 |
C8 |
C6 |
C1 |
44.0 |
44.6 |
C5 |
C6 |
C1 |
C8 |
180.4 |
180.1 |
C1 |
C6 |
C8 |
H81 |
283.5 |
284.7 |
C1 |
C6 |
C8 |
H82 |
44.0 |
44.6 |
C2 |
C1 |
C6 |
H1 |
180.0 |
180.0 |
C6 |
C1 |
C2 |
C3 |
0.0 |
360.0 |
C6 |
C1 |
C2 |
H2 |
180.0 |
180.1 |
C4 |
C3 |
C2 |
C1 |
0.0 |
0.3 |
C6 |
C1 |
C2 |
H1 |
180.0 |
180.0 |
C3 |
C2 |
C1 |
H2 |
180.0 |
179.9 |
C1 |
C2 |
C3 |
CL3 |
180.1 |
180.0 |
C6 |
C1 |
H1 |
C2 |
180.0 |
180.0 |
H1 |
C1 |
C2 |
C3 |
180.0 |
180.0 |
H1 |
C1 |
C2 |
H2 |
0.0 |
0.1 |
C4 |
C3 |
C2 |
CL3 |
180.0 |
180.3 |
C3 |
C2 |
C1 |
H1 |
180.0 |
180.0 |
C1 |
C2 |
C3 |
H2 |
180.0 |
180.1 |
H2 |
C2 |
C1 |
H1 |
0.0 |
0.1 |
C1 |
C2 |
H2 |
C3 |
180.0 |
179.9 |
H2 |
C2 |
C3 |
CL3 |
0.1 |
360.0 |
C4 |
C3 |
CL3 |
C2 |
180.1 |
179.7 |
CL3 |
C3 |
C2 |
H2 |
0.1 |
360.0 |