PDB Chemical Component SK3

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SK3

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C5	N5	1.474	1.468
C5	C4	1.532	1.549
C5	C1	1.520	1.549
C5	H5	1.100	1.090
N5	C6	1.465	1.469
N5	HN5	1.000	1.009
C4	O4	1.419	1.430
C4	C3	1.539	1.543
C4	H4	1.100	1.090
O4	HO4	0.950	0.967
C3	O3	1.424	1.429
C3	C2	1.526	1.539
C3	H3	1.100	1.090
O3	HO3	0.950	0.967
C2	O2	1.408	1.428
C2	C1	1.524	1.543
C2	H2	1.100	1.090
O2	HO2	0.950	0.968
C1	O1	1.403	1.428
C1	H1	1.100	1.090
O1	HO1	0.950	0.967
C6	C7	1.543	1.507
C6	H61	1.100	1.091
C6	H62	1.100	1.089
C7	C12	1.389	1.382
C7	C8	1.405	1.383
C12	C11	1.400	1.383
C12	H12	1.080	1.080
C11	C10	1.398	1.382
C11	H11	1.080	1.080
C8	C9	1.417	1.382
C8	H8	1.080	1.080
C9	C10	1.401	1.383
C9	H9	1.080	1.079
C10	H10	1.080	1.079

Bond Angles for SK3

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N5	C5	C4	112.9	110.9
N5	C5	C1	111.7	110.7
N5	C5	H5	104.9	110.7
C5	N5	C6	110.6	106.7
C5	N5	HN5	109.1	106.7
C4	C5	C1	107.4	102.8
C4	C5	H5	109.4	110.7
C5	C4	O4	112.9	110.5
C5	C4	C3	106.7	104.2
C5	C4	H4	109.4	110.5
C1	C5	H5	110.6	110.8
C5	C1	C2	99.1	104.2
C5	C1	O1	115.2	110.6
C5	C1	H1	114.4	110.5
C6	N5	HN5	109.1	106.7
N5	C6	C7	116.3	109.5
N5	C6	H61	105.7	109.4
N5	C6	H62	107.2	109.5
O4	C4	C3	110.3	110.6
O4	C4	H4	105.7	110.4
C4	O4	HO4	109.5	106.7
C3	C4	H4	112.0	110.5
C4	C3	O3	113.3	110.1
C4	C3	C2	102.2	106.6
C4	C3	H3	112.9	110.0
O3	C3	C2	112.4	110.0
O3	C3	H3	102.7	110.0
C3	O3	HO3	109.5	106.8
C2	C3	H3	113.8	110.1
C3	C2	O2	116.4	110.1
C3	C2	C1	107.5	106.6
C3	C2	H2	108.4	110.0
O2	C2	C1	115.3	110.1
O2	C2	H2	99.2	110.0
C2	O2	HO2	109.5	106.8
C1	C2	H2	109.7	110.0
C2	C1	O1	114.1	110.5
C2	C1	H1	115.5	110.4
O1	C1	H1	99.5	110.5
C1	O1	HO1	109.5	106.8
C7	C6	H61	105.7	109.5
C7	C6	H62	107.3	109.5
C6	C7	C12	118.2	120.0
C6	C7	C8	108.4	120.0
H61	C6	H62	115.0	109.4
C12	C7	C8	133.4	120.0
C7	C12	C11	112.6	120.0
C7	C12	H12	123.7	120.0
C7	C8	C9	111.1	120.0
C7	C8	H8	124.4	120.0
C11	C12	H12	123.7	120.0
C12	C11	C10	118.2	120.0
C12	C11	H11	120.9	120.0
C10	C11	H11	121.0	120.0
C11	C10	C9	126.2	120.0
C11	C10	H10	116.9	120.1
C9	C8	H8	124.4	120.0
C8	C9	C10	118.5	120.0
C8	C9	H9	120.8	120.0
C10	C9	H9	120.7	120.0
C9	C10	H10	116.9	120.0

Torsion Angles for SK3

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C4	C5	N5	C1	238.8	246.5
C4	C5	N5	H5	119.0	123.3
N5	C5	C4	O4	17.5	37.5
N5	C5	C4	C3	138.8	156.3
N5	C5	C4	H4	260.1	275.0
C1	C5	N5	H5	240.2	236.8
N5	C5	C1	C2	201.6	203.6
N5	C5	C1	O1	323.8	322.3
N5	C5	C1	H1	78.2	84.9
C6	N5	C5	HN5	240.0	246.2
C5	N5	C6	C7	180.3	180.0
C5	N5	C6	H61	63.4	300.0
C5	N5	C6	H62	300.3	59.9
N5	C5	C4	C1	123.6	118.4
N5	C5	C4	H5	243.6	236.7
C4	C5	N5	C6	161.2	91.6
C4	C5	N5	HN5	281.1	205.3
C1	C5	C4	H5	120.1	118.3
C4	C5	C1	C2	325.9	322.1
C4	C5	C1	O1	88.1	80.8
C4	C5	C1	H1	202.5	203.5
O4	C4	C5	C3	238.7	241.2
O4	C4	C5	H4	117.4	122.5
C5	C4	O4	HO4	93.1	180.0
C3	C4	C5	H4	238.7	241.3
C5	C4	C3	O3	249.4	217.1
C5	C4	C3	C2	10.6	336.4
C5	C4	C3	H3	133.1	95.8
N5	C5	C1	C4	235.7	241.5
N5	C5	C1	H5	116.4	123.2
C1	C5	N5	C6	282.3	205.0
C1	C5	N5	HN5	42.3	318.8
C4	C5	C1	H5	240.7	241.7
C1	C5	C4	O4	254.0	279.1
C1	C5	C4	C3	15.3	37.9
C1	C5	C4	H4	136.6	156.6
C3	C2	C1	C5	42.0	23.6
O2	C2	C1	C5	173.5	142.9
C5	C1	C2	H2	284.4	264.4
C2	C1	C5	O1	237.8	241.3
C2	C1	C5	H1	123.4	118.6
O1	C1	C5	H1	245.6	237.3
C5	C1	O1	HO1	202.3	183.7
N5	C5	H5	C4	121.3	123.4
N5	C5	H5	C1	239.4	236.8
H5	C5	N5	C6	42.2	328.2
H5	C5	N5	HN5	162.1	82.0
C4	C5	H5	C1	118.1	113.3
H5	C5	C4	O4	133.9	160.8
H5	C5	C4	C3	255.2	279.6
H5	C5	C4	H4	16.5	38.3
H5	C5	C1	C2	85.2	80.4
H5	C5	C1	O1	207.3	199.1
H5	C5	C1	H1	321.8	321.8
C6	N5	C5	C4	161.2	91.6
C6	N5	C5	C1	282.3	205.0
C6	N5	C5	H5	42.2	328.2
C5	N5	C6	HN5	120.0	113.8
C7	C6	N5	H61	116.9	240.0
C7	C6	N5	H62	240.0	120.1
N5	C6	C7	C12	95.0	90.0
N5	C6	C7	C8	276.3	269.7
H61	C6	N5	H62	123.1	240.1
HN5	N5	C5	C4	281.1	205.3
HN5	N5	C5	C1	42.3	318.8
HN5	N5	C5	H5	162.1	82.0
C5	N5	HN5	C6	239.1	246.2
HN5	N5	C6	C7	60.3	66.2
HN5	N5	C6	H61	303.4	186.2
HN5	N5	C6	H62	180.3	306.1
O4	C4	C5	C1	254.0	279.1
O4	C4	C5	H5	133.9	160.8
C5	C4	O4	C3	119.2	114.8
C5	C4	O4	H4	240.5	237.5
C3	C4	O4	H4	121.2	122.7
O4	C4	C3	O3	12.3	335.8
O4	C4	C3	C2	133.5	95.1
O4	C4	C3	H3	256.0	214.5
C3	C4	C5	C1	15.3	37.9
C3	C4	C5	H5	255.2	279.6
C5	C4	C3	O4	237.1	241.3
C5	C4	C3	H4	119.6	118.7
O4	C4	C3	H4	242.5	237.4
C3	C4	O4	HO4	333.9	65.2
O3	C3	C4	C2	238.8	240.7
O3	C3	C4	H3	116.2	121.4
C4	C3	O3	HO3	178.5	179.3
C2	C3	C4	H3	237.4	240.7
C4	C3	C2	O2	195.8	240.7
C4	C3	C2	C1	326.7	360.0
C4	C3	C2	H2	85.2	119.2
H4	C4	C5	C1	136.6	156.6
H4	C4	C5	H5	16.5	38.3
C5	C4	H4	O4	121.8	122.5
C5	C4	H4	C3	242.0	245.2
O4	C4	H4	C3	120.2	122.7
H4	C4	O4	HO4	212.7	302.5
H4	C4	C3	O3	129.7	98.4
H4	C4	C3	C2	250.9	217.7
H4	C4	C3	H3	13.5	337.1
HO4	O4	C4	C3	333.9	65.2
HO4	O4	C4	H4	212.7	302.5
O3	C3	C4	H4	129.7	98.4
C4	C3	O3	C2	115.2	117.2
C4	C3	O3	H3	237.9	238.6
C2	C3	O3	H3	122.7	121.4
O3	C3	C2	O2	317.6	360.0
O3	C3	C2	C1	88.5	119.3
O3	C3	C2	H2	207.0	238.5
C5	C1	C2	C3	42.0	23.6
C2	C3	C4	H4	250.9	217.7
C4	C3	C2	O3	238.2	240.7
C4	C3	C2	H3	122.0	119.3
O3	C3	C2	H3	243.8	238.6
C2	C3	O3	HO3	63.2	62.1
O2	C2	C3	C1	229.0	240.7
O2	C2	C3	H2	110.6	121.4
C3	C2	O2	HO2	167.2	298.5
C1	C2	C3	H2	241.5	240.7
C3	C2	C1	O1	279.0	264.8
C3	C2	C1	H1	164.6	142.3
H3	C3	C4	H4	13.5	337.1
C4	C3	H3	O3	122.4	121.4
C4	C3	H3	C2	244.2	242.8
O3	C3	H3	C2	121.8	121.4
H3	C3	O3	HO3	300.6	300.7
H3	C3	C2	O2	73.8	121.4
H3	C3	C2	C1	204.7	240.7
H3	C3	C2	H2	323.2	359.9
HO3	O3	C3	C2	63.2	62.1
HO3	O3	C3	H3	300.6	300.7
C5	C1	C2	O2	173.5	142.9
O2	C2	C3	H3	73.8	121.4
C3	C2	O2	C1	127.2	117.2
C3	C2	O2	H2	244.2	238.6
C1	C2	O2	H2	116.9	121.4
O2	C2	C1	O1	50.6	24.1
O2	C2	C1	H1	296.2	261.6
C2	C1	C5	H5	85.2	80.4
C5	C1	C2	O1	123.0	118.8
C5	C1	C2	H1	237.4	241.3
C1	C2	C3	H3	204.7	240.7
C3	C2	C1	O2	228.4	240.7
C3	C2	C1	H2	117.6	119.3
O2	C2	C1	H2	249.2	238.6
C1	C2	O2	HO2	40.0	181.4
O1	C1	C2	H1	114.4	122.5
C2	C1	O1	HO1	316.0	298.5
H2	C2	C3	H3	323.2	359.9
C3	C2	H2	O2	121.8	121.4
C3	C2	H2	C1	242.9	242.9
O2	C2	H2	C1	121.1	121.4
H2	C2	O2	HO2	283.1	60.0
H2	C2	C1	O1	161.4	145.5
H2	C2	C1	H1	47.0	23.0
HO2	O2	C2	C1	40.0	181.4
HO2	O2	C2	H2	283.1	60.0
O1	C1	C5	H5	207.3	199.1
C5	C1	O1	C2	246.3	245.1
C5	C1	O1	H1	122.8	122.7
O1	C1	C2	H2	161.4	145.5
C2	C1	O1	H1	236.5	237.5
H1	C1	C5	H5	321.8	321.8
C5	C1	H1	C2	114.1	114.7
C5	C1	H1	O1	236.6	237.3
H1	C1	C2	H2	47.0	23.0
C2	C1	H1	O1	122.6	122.5
H1	C1	O1	HO1	79.6	61.0
HO1	O1	C1	H1	79.6	61.0
C7	C6	N5	HN5	60.3	66.2
N5	C6	C7	H61	243.1	119.9
N5	C6	C7	H62	120.0	240.0
H61	C6	C7	H62	236.9	120.0
C12	C7	C6	C8	178.7	180.3
C6	C7	C12	C11	181.0	180.0
C6	C7	C12	H12	1.1	360.0
C6	C7	C8	C9	178.7	179.8
C6	C7	C8	H8	358.6	0.2
H61	C6	N5	HN5	303.4	186.2
N5	C6	H61	C7	123.8	240.0
N5	C6	H61	H62	242.0	119.9
C7	C6	H61	H62	118.1	239.9
H61	C6	C7	C12	211.9	330.0
H61	C6	C7	C8	33.2	149.8
H62	C6	N5	HN5	180.3	306.1
N5	C6	H62	C7	234.4	120.1
N5	C6	H62	H61	117.2	240.1
C7	C6	H62	H61	242.8	120.0
H62	C6	C7	C12	335.0	210.0
H62	C6	C7	C8	156.3	29.8
C12	C7	C6	H61	211.9	330.0
C12	C7	C6	H62	335.0	210.0
C6	C7	C12	C8	181.7	179.7
C12	C7	C8	C9	0.3	359.5
C12	C7	C8	H8	180.3	180.0
C11	C12	C7	H12	180.0	180.0
C7	C12	C11	C10	0.6	0.0
C7	C12	C11	H11	180.6	179.9
C8	C7	C6	H61	33.2	149.8
C8	C7	C6	H62	156.3	29.8
C6	C7	C8	C12	178.4	180.3
C8	C7	C12	C11	359.3	0.3
C8	C7	C12	H12	179.3	180.2
C9	C8	C7	H8	180.0	179.6
C7	C8	C9	C10	0.2	0.5
C7	C8	C9	H9	180.2	180.3
C11	C12	C7	C8	359.3	0.3
C7	C12	C11	H12	180.0	180.0
C10	C11	C12	H11	180.0	180.1
C12	C11	C10	C9	359.7	360.0
C12	C11	C10	H10	179.7	180.0
H12	C12	C7	C8	179.3	180.2
C7	C12	H12	C11	180.0	180.0
H12	C12	C11	C10	180.6	180.0
H12	C12	C11	H11	0.6	360.0
C10	C11	C12	H12	180.6	180.0
C12	C11	C10	H11	180.0	179.9
C8	C9	C10	C11	359.9	359.8
C11	C10	C9	H9	179.8	180.0
C9	C10	C11	H10	180.0	180.0
H11	C11	C12	H12	0.6	360.0
C12	C11	H11	C10	180.0	180.1
H11	C11	C10	C9	179.7	180.0
H11	C11	C10	H10	359.7	0.0
C7	C8	C9	H8	180.0	180.4
C11	C10	C9	C8	359.9	359.8
C10	C9	C8	H9	180.0	180.2
C8	C9	C10	H10	179.9	179.8
C7	C8	H8	C9	180.0	179.6
H8	C8	C9	C10	180.2	180.0
H8	C8	C9	H9	0.2	359.8
C9	C10	C11	H11	179.7	180.0
C11	C10	C9	H10	180.0	180.0
C10	C9	C8	H8	180.2	180.0
C8	C9	C10	H9	180.0	179.8
H9	C9	C8	H8	0.2	359.8
C8	C9	H9	C10	180.0	180.2
H9	C9	C10	H10	359.8	0.0
H10	C10	C11	H11	359.7	0.0
C11	C10	H10	C9	180.0	180.0
H10	C10	C9	H9	359.8	0.0