PDB Chemical Component SK1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SK1

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N3 C11 1.431 1.464
N3 C10 1.378 1.347
N3 H3 0.999 0.970
N5 C18 1.348 1.378
N5 H5N1 1.000 0.970
N5 H5N2 1.000 0.970
C18 N4 1.341 1.303
C18 C14 1.404 1.480
N4 H4 1.000 0.970
C14 C13 1.406 1.395
C14 C15 1.410 1.395
C13 C12 1.407 1.380
C13 H13 1.080 1.080
C12 C17 1.411 1.383
C12 H12 1.080 1.081
C17 C16 1.398 1.384
C17 C11 1.511 1.507
C16 C15 1.396 1.379
C16 H16 1.080 1.080
C15 H15 1.080 1.080
C11 H111 1.100 1.090
C11 H112 1.099 1.090
C10 O5 1.207 1.212
C10 C8 1.506 1.507
C8 N2 1.425 1.464
C8 C22 1.532 1.531
C8 H8 1.100 1.090
N2 C7 1.378 1.348
N2 H2 1.000 0.971
C7 O4 1.215 1.213
C7 C5 1.516 1.507
C5 C6 1.536 1.529
C5 N1 1.423 1.465
C5 H5 1.100 1.090
C6 O3 1.408 1.429
C6 H6C1 1.100 1.090
C6 H6C2 1.100 1.090
O3 HA 0.950 0.967
N1 S1 1.641 1.656
N1 H1 1.000 0.970
S1 O1 1.472 1.421
S1 O2 1.443 1.421
S1 C1 1.799 1.814
C1 C4 1.513 1.507
C1 H1C1 1.100 1.090
C1 H1C2 1.100 1.090
C4 C19 1.399 1.382
C4 C3 1.406 1.382
C19 C20 1.397 1.382
C19 H19 1.080 1.080
C20 C21 1.401 1.382
C20 H20 1.080 1.081
C21 C2 1.403 1.382
C21 H21 1.080 1.080
C2 C3 1.403 1.382
C2 HC 1.080 1.080
C3 HB 1.080 1.080
C22 H221 1.100 1.090
C22 H222 1.100 1.090
C22 H223 1.100 1.089

Bond Angles for SK1

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C11 N3 C10 120.9 120.0
C11 N3 H3 119.5 120.0
N3 C11 C17 111.9 109.5
N3 C11 H111 108.1 109.5
N3 C11 H112 108.6 109.5
C10 N3 H3 119.5 120.0
N3 C10 O5 125.4 120.0
N3 C10 C8 113.9 120.0
C18 N5 H5N1 125.4 120.0
C18 N5 H5N2 109.3 120.0
N5 C18 N4 114.4 120.0
N5 C18 C14 125.6 120.0
H5N1 N5 H5N2 125.3 120.0
N4 C18 C14 120.0 120.0
C18 N4 H4 109.3 120.0
C18 C14 C13 122.8 120.1
C18 C14 C15 118.5 120.2
C13 C14 C15 118.8 119.7
C14 C13 C12 118.8 119.8
C14 C13 H13 120.6 120.1
C14 C15 C16 121.5 119.9
C14 C15 H15 119.3 120.0
C12 C13 H13 120.6 120.1
C13 C12 C17 122.3 120.2
C13 C12 H12 118.9 120.0
C17 C12 H12 118.8 119.9
C12 C17 C16 117.9 120.2
C12 C17 C11 122.4 119.9
C16 C17 C11 119.7 119.9
C17 C16 C15 120.4 120.1
C17 C16 H16 119.8 119.9
C17 C11 H111 108.1 109.5
C17 C11 H112 108.7 109.4
C15 C16 H16 119.8 120.0
C16 C15 H15 119.3 120.1
H111 C11 H112 111.4 109.5
O5 C10 C8 120.6 120.0
C10 C8 N2 113.8 109.5
C10 C8 C22 111.1 109.4
C10 C8 H8 104.7 109.5
N2 C8 C22 107.9 109.5
N2 C8 H8 108.2 109.5
C8 N2 C7 117.6 120.0
C8 N2 H2 121.2 120.0
C22 C8 H8 111.0 109.5
C8 C22 H221 109.4 109.5
C8 C22 H222 109.5 109.5
C8 C22 H223 109.5 109.5
C7 N2 H2 121.2 120.0
N2 C7 O4 121.5 120.0
N2 C7 C5 117.4 120.0
O4 C7 C5 121.1 120.0
C7 C5 C6 113.2 109.5
C7 C5 N1 112.6 109.4
C7 C5 H5 103.2 109.4
C6 C5 N1 104.3 109.5
C6 C5 H5 111.6 109.5
C5 C6 O3 107.4 109.5
C5 C6 H6C1 110.6 109.5
C5 C6 H6C2 110.2 109.5
N1 C5 H5 112.2 109.5
C5 N1 S1 127.4 120.0
C5 N1 H1 103.9 120.0
O3 C6 H6C1 110.7 109.5
O3 C6 H6C2 110.2 109.4
C6 O3 HA 109.5 106.8
H6C1 C6 H6C2 107.8 109.5
S1 N1 H1 103.9 120.0
N1 S1 O1 103.0 102.8
N1 S1 O2 104.7 102.8
N1 S1 C1 107.5 103.2
O1 S1 O2 114.9 122.1
O1 S1 C1 117.1 111.6
O2 S1 C1 108.4 111.6
S1 C1 C4 102.9 109.5
S1 C1 H1C1 113.1 109.5
S1 C1 H1C2 111.8 109.4
C4 C1 H1C1 113.1 109.5
C4 C1 H1C2 111.7 109.5
C1 C4 C19 121.1 120.0
C1 C4 C3 117.8 120.0
H1C1 C1 H1C2 104.5 109.5
C19 C4 C3 121.1 120.0
C4 C19 C20 117.8 120.0
C4 C19 H19 121.1 120.0
C4 C3 C2 119.5 120.0
C4 C3 HB 120.3 120.0
C20 C19 H19 121.1 120.0
C19 C20 C21 121.1 120.0
C19 C20 H20 119.5 120.0
C21 C20 H20 119.5 120.0
C20 C21 C2 120.5 120.0
C20 C21 H21 119.8 120.0
C2 C21 H21 119.7 120.0
C21 C2 C3 118.5 120.0
C21 C2 HC 120.7 120.0
C3 C2 HC 120.8 120.0
C2 C3 HB 120.2 120.0
H221 C22 H222 109.5 109.5
H221 C22 H223 109.5 109.4
H222 C22 H223 109.4 109.5

Torsion Angles for SK1

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C10 N3 C11 H3 180.0 180.0
C11 N3 C10 O5 3.3 0.0
C11 N3 C10 C8 184.1 180.0
C12 C17 C11 N3 274.8 90.0
C16 C17 C11 N3 94.8 269.7
C17 C11 N3 H111 119.0 240.0
C17 C11 N3 H112 240.0 120.0
H111 C11 N3 H112 121.0 240.0
C11 N3 C10 H3 180.0 180.0
C10 N3 C11 C17 95.0 180.0
C10 N3 C11 H111 336.0 300.0
C10 N3 C11 H112 215.0 60.0
O5 C10 N3 C8 179.2 180.0
N3 C10 C8 N2 147.0 180.0
N3 C10 C8 C22 269.1 300.0
N3 C10 C8 H8 29.0 60.0
C11 N3 H3 C10 180.0 180.0
H3 N3 C11 C17 275.0 0.0
H3 N3 C11 H111 156.0 120.0
H3 N3 C11 H112 35.0 240.0
H3 N3 C10 O5 183.3 180.0
H3 N3 C10 C8 4.1 360.0
H5N1 N5 C18 H5N2 180.0 180.0
N4 C18 N5 C14 179.7 180.0
N5 C18 N4 H4 180.0 0.0
N5 C18 C14 C13 10.1 180.0
N5 C18 C14 C15 189.5 360.0
C18 N5 H5N1 H5N2 180.0 180.0
H5N1 N5 C18 N4 180.0 180.0
H5N1 N5 C18 C14 0.3 360.0
C18 N5 H5N2 H5N1 180.0 180.0
H5N2 N5 C18 N4 360.0 360.0
H5N2 N5 C18 C14 180.3 180.0
N4 C18 N5 H5N1 180.0 180.0
N4 C18 N5 H5N2 360.0 360.0
N5 C18 N4 C14 180.3 180.0
N4 C18 C14 C13 190.4 360.0
N4 C18 C14 C15 9.8 180.0
C14 C18 N5 H5N1 0.3 360.0
C14 C18 N5 H5N2 180.3 180.0
N5 C18 C14 N4 179.7 180.0
C14 C18 N4 H4 359.8 180.0
C13 C14 C18 C15 180.6 180.0
C18 C14 C13 C12 171.9 180.0
C18 C14 C13 H13 351.9 0.0
C18 C14 C15 C16 184.6 179.7
C18 C14 C15 H15 4.6 0.0
H4 N4 C18 C14 359.8 180.0
C18 C14 C13 C15 179.4 180.0
C13 C14 C15 C16 4.1 359.7
C13 C14 C15 H15 184.1 180.0
C12 C13 C14 H13 180.0 179.9
C14 C13 C12 C17 5.9 0.0
C14 C13 C12 H12 185.9 180.1
C18 C14 C15 C13 180.6 180.0
C15 C14 C13 C12 352.5 360.0
C15 C14 C13 H13 172.5 180.0
C17 C16 C15 C14 1.5 0.6
C14 C15 C16 H16 181.5 180.0
C16 C15 C14 H15 180.0 179.7
C12 C13 C14 C15 352.5 360.0
C14 C13 C12 H13 180.0 180.1
C17 C12 C13 H12 180.0 180.0
C13 C12 C17 C16 359.6 0.3
C13 C12 C17 C11 179.6 180.0
H13 C13 C14 C15 172.5 180.0
C14 C13 H13 C12 180.0 179.9
H13 C13 C12 C17 185.8 180.0
H13 C13 C12 H12 5.9 360.0
N3 C11 C17 C12 274.8 90.0
C17 C12 C13 H13 185.8 180.0
C13 C12 C17 H12 180.0 180.0
C16 C17 C12 C11 180.0 180.3
C12 C17 C16 C15 356.7 359.4
C12 C17 C16 H16 176.7 180.0
C12 C17 C11 H111 33.7 330.0
C12 C17 C11 H112 154.8 210.0
H12 C12 C13 H13 5.9 360.0
C13 C12 H12 C17 180.0 180.0
H12 C12 C17 C16 179.6 180.3
H12 C12 C17 C11 359.6 359.9
N3 C11 C17 C16 94.8 269.7
C14 C15 C16 C17 1.5 0.6
C16 C17 C12 H12 179.6 180.3
C12 C17 C16 C11 180.0 179.7
C16 C17 C11 H111 213.7 149.7
C16 C17 C11 H112 334.8 29.7
C15 C16 C17 H16 180.0 179.4
C17 C16 C15 H15 181.5 180.3
C17 C11 N3 C10 95.0 180.0
C17 C11 N3 H3 275.0 0.0
N3 C11 C17 H111 241.0 120.0
N3 C11 C17 H112 120.0 240.0
C11 C17 C12 H12 359.6 359.9
C12 C17 C11 C16 180.0 180.3
C11 C17 C16 C15 176.7 179.7
C11 C17 C16 H16 356.7 0.3
H111 C11 C17 H112 238.9 120.0
C14 C15 C16 H15 180.0 180.3
C15 C16 C17 C11 176.7 179.7
C17 C16 C15 H16 180.0 180.6
H16 C16 C17 C11 356.7 0.3
C17 C16 H16 C15 180.0 179.4
H16 C16 C15 H15 1.5 359.7
C14 C15 H15 C16 180.0 179.7
H15 C15 C16 H16 1.5 359.7
H111 C11 N3 C10 336.0 300.0
H111 C11 N3 H3 156.0 120.0
N3 C11 H111 C17 121.3 240.0
N3 C11 H111 H112 240.7 120.0
C17 C11 H111 H112 119.4 240.0
H112 C11 N3 C10 215.0 60.0
H112 C11 N3 H3 35.0 240.0
N3 C11 H112 C17 238.0 120.0
N3 C11 H112 H111 119.0 240.0
C17 C11 H112 H111 241.0 120.0
O5 C10 N3 H3 183.3 180.0
N3 C10 O5 C8 180.9 180.0
O5 C10 C8 N2 327.8 0.0
O5 C10 C8 C22 89.9 120.0
O5 C10 C8 H8 209.8 240.0
C8 C10 N3 H3 4.1 360.0
N3 C10 C8 O5 179.2 180.0
N2 C8 C10 C22 237.9 240.0
N2 C8 C10 H8 118.0 120.0
C10 C8 N2 C7 295.5 205.0
C10 C8 N2 H2 115.5 25.0
C22 C8 C10 H8 240.1 240.0
C10 C8 C22 H221 39.3 180.0
C10 C8 C22 H222 279.3 300.0
C10 C8 C22 H223 159.3 60.0
C10 C8 N2 C22 123.9 120.0
C10 C8 N2 H8 244.0 240.0
C22 C8 N2 H8 120.2 120.0
N2 C8 C22 H221 164.8 300.0
N2 C8 C22 H222 44.8 60.0
N2 C8 C22 H223 284.8 180.1
C7 N2 C8 H2 180.0 180.0
C8 N2 C7 O4 357.6 360.0
C8 N2 C7 C5 176.5 180.0
C10 C8 C22 N2 234.5 240.0
C10 C8 C22 H8 116.2 120.0
N2 C8 C22 H8 241.6 240.0
C22 C8 N2 C7 171.7 85.0
C22 C8 N2 H2 351.7 265.0
H221 C22 C8 H222 120.0 240.0
H221 C22 C8 H223 240.0 119.9
H222 C22 C8 H223 120.0 240.0
C10 C8 H8 N2 121.7 120.0
C10 C8 H8 C22 240.0 240.0
N2 C8 H8 C22 118.2 120.0
H8 C8 N2 C7 51.5 325.0
H8 C8 N2 H2 231.5 145.0
H8 C8 C22 H221 283.2 60.0
H8 C8 C22 H222 163.1 180.0
H8 C8 C22 H223 43.2 300.0
C7 N2 C8 C22 171.7 85.0
C7 N2 C8 H8 51.5 325.0
C8 N2 C7 H2 180.0 180.0
O4 C7 N2 C5 181.1 180.0
N2 C7 C5 C6 99.1 60.0
N2 C7 C5 N1 217.2 180.0
N2 C7 C5 H5 338.4 300.0
H2 N2 C8 C22 351.7 265.0
H2 N2 C8 H8 231.5 145.0
C8 N2 H2 C7 180.0 180.0
H2 N2 C7 O4 177.6 180.0
H2 N2 C7 C5 356.5 360.0
O4 C7 N2 H2 177.6 180.0
N2 C7 O4 C5 178.8 180.0
O4 C7 C5 C6 278.0 240.0
O4 C7 C5 N1 36.1 0.0
O4 C7 C5 H5 157.3 120.0
C5 C7 N2 H2 356.5 360.0
N2 C7 C5 O4 181.1 180.0
C6 C5 C7 N1 241.9 240.0
C6 C5 C7 H5 120.8 120.1
C7 C5 C6 O3 316.6 54.9
C7 C5 C6 H6C1 195.8 175.0
C7 C5 C6 H6C2 76.6 295.0
N1 C5 C7 H5 238.8 240.1
C7 C5 N1 S1 75.2 145.0
C7 C5 N1 H1 195.2 324.9
C7 C5 C6 N1 122.8 120.0
C7 C5 C6 H5 244.1 240.0
N1 C5 C6 H5 121.4 120.0
C6 C5 N1 S1 198.4 265.0
C6 C5 N1 H1 318.3 84.9
O3 C6 C5 H6C1 120.8 240.0
O3 C6 C5 H6C2 240.0 119.9
C5 C6 O3 HA 172.2 180.0
H6C1 C6 C5 H6C2 119.1 239.9
C7 C5 N1 C6 236.8 240.0
C7 C5 N1 H5 115.9 119.9
C6 C5 N1 H5 239.0 239.9
N1 C5 C6 O3 193.8 295.0
N1 C5 C6 H6C1 73.0 55.0
N1 C5 C6 H6C2 313.9 175.1
S1 N1 C5 H1 240.0 180.1
C5 N1 S1 O1 175.7 308.8
C5 N1 S1 O2 55.2 181.2
C5 N1 S1 C1 300.0 65.0
C7 C5 H5 C6 121.9 120.0
C7 C5 H5 N1 238.6 240.1
C6 C5 H5 N1 116.7 120.0
H5 C5 C6 O3 72.5 175.0
H5 C5 C6 H6C1 311.6 295.0
H5 C5 C6 H6C2 192.5 55.1
H5 C5 N1 S1 319.3 25.1
H5 C5 N1 H1 79.3 205.0
O3 C6 C5 N1 193.8 295.0
O3 C6 C5 H5 72.5 175.0
C5 C6 O3 H6C1 239.2 120.1
C5 C6 O3 H6C2 120.0 240.1
H6C1 C6 O3 H6C2 240.9 120.0
H6C1 C6 C5 N1 73.0 55.0
H6C1 C6 C5 H5 311.6 295.0
C5 C6 H6C1 O3 118.9 239.9
C5 C6 H6C1 H6C2 239.4 120.0
O3 C6 H6C1 H6C2 120.6 240.1
H6C1 C6 O3 HA 293.0 59.9
H6C2 C6 C5 N1 313.9 175.1
H6C2 C6 C5 H5 192.5 55.1
C5 C6 H6C2 O3 241.7 120.0
C5 C6 H6C2 H6C1 120.8 239.9
O3 C6 H6C2 H6C1 239.1 120.0
H6C2 C6 O3 HA 52.2 299.9
HA O3 C6 H6C1 293.0 59.9
HA O3 C6 H6C2 52.2 299.9
S1 N1 C5 H5 319.3 25.1
C5 N1 S1 H1 120.0 179.9
O1 S1 N1 O2 120.5 127.6
O1 S1 N1 C1 235.7 243.8
O2 S1 N1 C1 115.2 116.2
N1 S1 C1 C4 177.4 180.0
N1 S1 C1 H1C1 55.1 300.0
N1 S1 C1 H1C2 297.4 60.0
H1 N1 C5 H5 79.3 205.0
C5 N1 H1 S1 225.1 180.1
H1 N1 S1 O1 55.8 128.9
H1 N1 S1 O2 295.2 1.2
H1 N1 S1 C1 180.0 245.1
O1 S1 N1 H1 55.8 128.9
N1 S1 O1 O2 246.8 245.7
N1 S1 O1 C1 117.8 110.0
O2 S1 O1 C1 231.0 224.3
O1 S1 C1 C4 292.7 289.8
O1 S1 C1 H1C1 170.4 49.7
O1 S1 C1 H1C2 52.7 169.8
O2 S1 N1 H1 295.2 1.2
N1 S1 O2 O1 112.3 114.3
N1 S1 O2 C1 245.4 250.0
O1 S1 O2 C1 133.2 135.7
O2 S1 C1 C4 64.8 70.3
O2 S1 C1 H1C1 302.4 190.2
O2 S1 C1 H1C2 184.8 310.3
C1 S1 N1 H1 180.0 245.1
N1 S1 C1 O1 244.7 250.2
N1 S1 C1 O2 112.7 109.7
O1 S1 C1 O2 228.0 219.5
C4 C1 S1 H1C1 122.4 240.0
C4 C1 S1 H1C2 240.0 120.0
S1 C1 C4 C19 96.4 90.0
S1 C1 C4 C3 277.8 269.7
H1C1 C1 S1 H1C2 117.6 240.0
S1 C1 C4 H1C1 237.6 120.0
S1 C1 C4 H1C2 120.0 240.0
H1C1 C1 C4 H1C2 242.4 120.0
C19 C4 C1 C3 178.5 180.2
C1 C4 C19 C20 191.1 180.0
C1 C4 C19 H19 11.1 0.0
C1 C4 C3 C2 163.9 179.7
C1 C4 C3 HB 343.9 0.2
S1 C1 H1C1 C4 116.5 240.0
S1 C1 H1C1 H1C2 238.2 120.0
C4 C1 H1C1 H1C2 121.7 240.0
H1C1 C1 C4 C19 218.7 330.0
H1C1 C1 C4 C3 40.2 149.8
S1 C1 H1C2 C4 245.3 120.0
S1 C1 H1C2 H1C1 122.7 240.0
C4 C1 H1C2 H1C1 237.4 120.0
H1C2 C1 C4 C19 336.3 209.9
H1C2 C1 C4 C3 157.8 29.7
C19 C4 C1 H1C1 218.7 330.0
C19 C4 C1 H1C2 336.3 209.9
C1 C4 C19 C3 181.5 179.8
C19 C4 C3 C2 345.4 359.5
C19 C4 C3 HB 165.3 180.0
C20 C19 C4 H19 180.0 180.0
C4 C19 C20 C21 359.8 360.0
C4 C19 C20 H20 179.9 180.0
C3 C4 C1 H1C1 40.2 149.8
C3 C4 C1 H1C2 157.8 29.7
C1 C4 C3 C19 178.5 180.2
C3 C4 C19 C20 9.6 0.3
C3 C4 C19 H19 189.6 180.2
C21 C2 C3 C4 10.0 0.5
C4 C3 C2 HC 190.0 180.2
C2 C3 C4 HB 180.0 179.5
C20 C19 C4 C3 9.6 0.3
C4 C19 C20 H19 180.0 180.0
C21 C20 C19 H20 180.0 180.0
C19 C20 C21 C2 355.8 0.0
C19 C20 C21 H21 175.8 180.0
H19 C19 C4 C3 189.6 180.2
C4 C19 H19 C20 180.0 180.0
H19 C19 C20 C21 179.8 180.0
H19 C19 C20 H20 359.8 0.0
C21 C20 C19 H19 179.8 180.0
C19 C20 C21 H20 180.0 180.0
C2 C21 C20 H21 180.0 180.1
C20 C21 C2 C3 359.2 359.7
C20 C21 C2 HC 179.2 180.0
H20 C20 C19 H19 359.8 0.0
C19 C20 H20 C21 180.0 180.0
H20 C20 C21 C2 175.8 180.0
H20 C20 C21 H21 355.8 359.9
C4 C3 C2 C21 10.0 0.5
C2 C21 C20 H20 175.8 180.0
C20 C21 C2 H21 180.0 179.9
C3 C2 C21 HC 180.0 179.8
C21 C2 C3 HB 190.0 180.0
H21 C21 C20 H20 355.8 359.9
C20 C21 H21 C2 180.0 180.1
H21 C21 C2 C3 179.2 179.8
H21 C21 C2 HC 359.2 0.1
C4 C3 C2 HB 180.0 180.5
C3 C2 C21 H21 179.2 179.8
C21 C2 C3 HC 180.0 180.2
HC C2 C21 H21 359.2 0.1
C21 C2 HC C3 180.0 179.8
HC C2 C3 HB 10.0 359.7
C4 C3 HB C2 180.0 179.5
HB C3 C2 HC 10.0 359.7
H221 C22 C8 H8 283.2 60.0
C8 C22 H221 H222 240.0 120.0
C8 C22 H221 H223 120.0 240.0
H222 C22 H221 H223 240.0 120.0
H222 C22 C8 H8 163.1 180.0
C8 C22 H222 H221 120.0 240.0
C8 C22 H222 H223 240.0 120.0
H221 C22 H222 H223 120.0 240.0
H223 C22 C8 H8 43.2 300.0
C8 C22 H223 H221 240.0 120.0
C8 C22 H223 H222 120.0 240.0
H221 C22 H223 H222 239.9 120.0