PDB Chemical Component SIX

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SIX

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N2	C12	1.343	1.349
N2	N1	1.409	1.400
F	C	1.332	1.351
C12	C10	1.399	1.353
N1	C11	1.352	1.308
O	C7	1.231	1.213
C10	C11	1.401	1.399
C10	C9	1.508	1.508
C8	N	1.470	1.464
C8	C9	1.543	1.530
C7	N	1.335	1.348
C7	C6	1.514	1.507
C	C1	1.394	1.384
C	C5	1.403	1.385
C6	C5	1.536	1.507
C1	C2	1.409	1.382
C5	C4	1.393	1.382
C2	C3	1.395	1.382
C4	C3	1.408	1.383
C3	C13	1.478	1.507
C13	C14	1.534	1.531
C13	C17	1.547	1.532
O3	C24	1.372	1.365
O3	C23	1.424	1.440
C25	C24	1.380	1.385
C25	C19	1.408	1.387
C24	C22	1.361	1.393
C14	C15	1.529	1.531
C23	O2	1.437	1.439
O1	C19	1.396	1.360
O1	C18	1.432	1.429
C19	C20	1.401	1.386
O2	C22	1.362	1.366
C22	C21	1.389	1.385
C18	C17	1.502	1.530
C20	C21	1.407	1.382
C17	C16	1.526	1.530
C15	N3	1.475	1.468
C16	N3	1.491	1.469
N	H1	1.000	0.970
C8	H2	1.100	1.090
C8	H3	1.100	1.091
C9	H4	1.099	1.091
C9	H5	1.099	1.090
C12	H6	1.080	1.081
N2	H7	1.000	0.970
C11	H8	1.080	1.080
C6	H9	1.100	1.090
C6	H10	1.101	1.090
C4	H11	1.080	1.080
C2	H12	1.080	1.080
C1	H13	1.080	1.080
C13	H14	1.100	1.090
C17	H15	1.100	1.090
C16	H16	1.100	1.090
C16	H17	1.100	1.090
N3	H18	1.000	1.009
C15	H20	1.100	1.090
C15	H21	1.100	1.091
C14	H22	1.100	1.090
C14	H23	1.100	1.090
C18	H24	1.100	1.090
C18	H25	1.100	1.090
C25	H26	1.080	1.080
C23	H27	1.100	1.091
C23	H28	1.100	1.090
C21	H29	1.081	1.080
C20	H30	1.080	1.080

Bond Angles for SIX

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N2	C12	H6	126.8	126.1
N2	N1	C11	106.9	108.2
N1	N2	H7	124.8	126.0
F	C	C1	120.1	120.0
C12	C10	C11	108.2	107.9
C10	C11	N1	108.1	108.2
N1	C11	H8	126.0	125.9
O	C7	N	124.0	120.0
O	C7	C6	120.9	120.0
C10	C11	H8	125.9	125.9
C10	C9	H4	109.4	109.4
C10	C9	H5	109.4	109.5
C8	N	H1	118.3	120.0
C9	C8	H2	108.1	109.5
C9	C8	H3	108.1	109.5
C8	C9	H4	109.4	109.5
C8	C9	H5	109.4	109.5
N	C7	C6	115.0	120.0
C7	N	H1	118.3	120.0
C7	C6	C5	111.2	109.5
C7	C6	H9	109.1	109.4
C7	C6	H10	109.1	109.4
C	C1	C2	120.0	120.0
C	C1	H13	120.0	120.0
C	C5	C4	118.3	120.0
C6	C5	C4	119.7	120.0
C5	C6	H9	109.0	109.5
C5	C6	H10	109.0	109.5
C1	C2	H12	120.2	120.0
C5	C4	C3	121.5	120.0
C5	C4	H11	119.2	120.0
C2	C3	C13	120.8	119.9
C4	C3	C13	119.7	120.0
C3	C4	H11	119.2	120.0
C3	C13	C14	109.2	109.5
C3	C13	C17	113.2	109.6
C3	C13	H14	109.4	109.5
C17	C13	C14	107.8	109.2
C13	C14	C15	108.1	109.3
C14	C13	H14	108.7	109.5
C13	C14	H22	109.8	109.5
C13	C14	H23	109.8	109.5
C13	C17	C16	110.5	109.3
C17	C13	H14	108.5	109.6
C13	C17	H15	107.3	109.5
O3	C24	C22	110.2	108.6
O3	C23	O2	107.0	103.7
O3	C23	H27	110.1	110.5
O3	C23	H28	110.1	110.6
C25	C24	C22	122.0	119.9
C24	C25	H26	120.3	120.0
C25	C19	C20	117.9	120.0
C24	C22	O2	109.9	108.6
C24	C22	C21	121.0	119.9
C14	C15	H20	109.9	109.5
C14	C15	H21	109.9	109.4
C23	O2	C22	105.9	105.5
O2	C23	H27	110.1	110.6
O2	C23	H28	110.1	110.6
O1	C19	C20	119.3	120.0
O1	C18	H24	109.0	109.5
O1	C18	H25	109.0	109.4
C19	C20	C21	122.1	120.1
C19	C20	H30	118.9	120.0
O2	C22	C21	129.0	131.5
C22	C21	H29	121.2	119.9
C18	C17	H15	107.8	109.5
C20	C21	H29	121.2	120.0
C17	C16	N3	108.7	109.5
C16	C17	H15	107.5	109.6
C17	C16	H16	109.7	109.5
C17	C16	H17	109.7	109.5
C15	N3	H18	109.3	111.0
N3	C16	H16	109.7	109.4
N3	C16	H17	109.7	109.5
C16	N3	H18	109.2	111.0
H2	C8	H3	109.5	109.4
H4	C9	H5	109.5	109.5
H9	C6	H10	109.5	109.5
H16	C16	H17	109.5	109.5
H20	C15	H21	109.5	109.5
H22	C14	H23	109.5	109.5
H24	C18	H25	109.4	109.5
H27	C23	H28	109.5	110.6

Torsion Angles for SIX

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N2	C12	C10	C11	359.4	0.0
N1	N2	C12	H6	181.1	180.0
C10	C11	N1	N2	0.9	0.0
N2	N1	C11	H8	180.9	180.3
F	C	C1	C2	179.6	180.0
F	C	C1	H13	359.6	359.9
F	C	C5	C4	180.6	180.3
C12	C10	C11	N1	359.8	360.0
C12	C10	C11	H8	179.8	179.7
C12	C10	C9	H4	354.4	150.3
C12	C10	C9	H5	114.4	30.3
C11	N1	N2	H7	178.7	180.0
C10	C11	N1	H8	180.0	179.7
N	C7	O	C6	181.7	180.3
O	C7	N	H1	183.2	180.0
O	C7	C6	C5	321.9	360.0
O	C7	C6	H9	82.2	120.0
O	C7	C6	H10	201.7	240.0
N2	N1	C11	C10	0.9	0.0
N1	C11	C10	H8	180.0	180.3
C11	C10	C9	H4	173.0	330.0
C11	C10	C9	H5	293.0	210.0
C10	C9	C8	H2	50.9	60.0
C10	C9	C8	H3	292.4	300.0
C8	C9	C10	H4	240.0	120.0
C8	C9	C10	H5	120.0	240.0
H4	C9	C10	H5	240.0	120.0
C8	N	C7	C6	184.8	180.2
C7	N	C8	H1	180.0	180.0
C10	C9	C8	H4	120.0	240.1
C10	C9	C8	H5	240.0	120.0
C9	C8	N	H1	0.6	360.0
H2	C8	C9	H3	118.5	120.0
H4	C9	C8	H5	120.0	240.0
O	C7	N	C6	178.4	179.7
C8	N	C7	H1	180.0	180.0
N	C7	C6	C5	140.3	179.7
N	C7	C6	H9	260.6	299.7
N	C7	C6	H10	20.1	59.7
O	C7	C6	N	181.6	180.3
C6	C7	N	H1	4.8	0.2
C7	C6	C5	C4	267.5	100.0
C5	C6	C7	H9	239.8	240.0
C5	C6	C7	H10	120.3	120.0
H9	C6	C7	H10	240.5	240.0
C1	C	C5	C4	359.9	0.2
C	C1	C2	H12	179.7	180.0
C6	C5	C	C4	179.3	179.8
C	C5	C6	H9	327.9	160.3
C	C5	C6	H10	208.5	40.2
C	C5	C4	C3	359.9	359.8
C	C5	C4	H11	179.9	179.8
C7	C6	C5	H9	120.3	120.0
C7	C6	C5	H10	239.7	240.1
C	C5	C6	C4	180.7	180.2
C6	C5	C4	C3	180.6	180.0
C6	C5	C4	H11	0.6	360.0
H9	C6	C5	H10	119.5	120.1
C	C1	C2	H13	180.0	180.0
C1	C2	C3	C13	179.5	180.2
C4	C5	C6	H9	147.2	340.1
C4	C5	C6	H10	27.7	220.0
C5	C4	C3	C13	180.7	180.0
C3	C4	C5	H11	180.0	180.0
C	C1	C2	C3	359.8	359.7
C4	C3	C2	C13	180.5	180.1
C2	C3	C4	H11	180.2	180.0
C2	C3	C13	C14	242.0	60.0
C2	C3	C13	C17	121.9	300.3
C2	C3	C13	H14	0.9	180.1
C5	C4	C3	H11	180.0	180.0
C2	C3	C4	C13	179.5	179.9
C4	C3	C13	C14	61.5	240.0
C4	C3	C13	C17	301.4	120.3
C4	C3	C13	H14	180.4	0.1
C13	C3	C4	H11	0.7	0.0
C17	C13	C3	C14	239.9	240.3
C3	C13	C14	C15	176.1	182.4
C14	C13	C3	H14	241.2	239.9
C3	C13	C14	H22	295.9	302.4
C3	C13	C14	H23	56.4	62.5
C3	C13	C17	C16	178.6	177.6
C17	C13	C3	H14	121.1	120.2
C3	C13	C17	H15	61.6	57.6
C3	C13	C14	C17	236.7	240.1
C3	C13	C14	H14	119.3	120.1
C14	C13	C17	C16	57.7	57.7
C17	C13	C14	H14	242.6	240.0
C14	C13	C17	H15	300.8	297.7
C13	C14	C15	H20	184.5	299.2
C13	C14	C15	H21	305.0	179.2
H22	C14	C13	H23	239.6	239.9
C3	C13	C17	C14	120.9	119.9
C3	C13	C17	H14	238.4	239.9
C17	C13	C14	C15	299.5	302.3
C14	C13	C17	H14	117.5	119.9
C17	C13	C14	H22	59.3	62.3
C17	C13	C14	H23	179.7	182.4
C18	C17	C13	H15	240.0	239.9
C13	C17	C16	N3	302.4	300.8
C16	C17	C13	H15	117.0	120.0
C13	C17	C16	H16	62.3	60.8
C13	C17	C16	H17	182.6	180.8
C25	C24	O3	C22	179.3	180.0
O3	C24	C25	H26	359.8	0.1
O3	C24	C22	O2	1.1	360.0
O3	C24	C22	C21	178.6	180.1
C23	O3	C24	C22	351.8	342.7
O3	C23	O2	C22	348.7	332.8
O2	C23	O3	H27	240.4	241.5
O2	C23	O3	H28	119.6	118.6
H27	C23	O3	H28	239.2	237.1
O3	C24	C25	C22	180.8	180.0
C24	C25	C19	C20	1.4	0.3
C25	C24	C22	O2	181.7	180.0
C25	C24	C22	C21	359.2	0.1
O1	C19	C25	C20	178.5	179.8
C25	C19	C20	C21	359.9	359.4
C25	C19	C20	H30	179.8	179.7
C22	C24	C25	H26	179.0	180.0
C23	O2	C22	C24	6.5	17.3
O2	C22	C24	C21	182.5	179.9
C24	C22	C21	H29	182.0	180.0
C15	C14	C13	H14	56.9	62.3
C13	C14	C15	H22	119.8	119.9
C13	C14	C15	H23	240.2	240.0
C14	C15	N3	H18	54.5	62.3
H20	C15	C14	H21	239.4	120.0
O3	C23	O2	H27	119.6	118.5
O3	C23	O2	H28	240.4	241.4
C24	C22	O2	C23	6.5	17.3
C23	O2	C22	C21	189.2	197.2
H27	C23	O2	H28	120.8	122.9
C25	C19	O1	C20	181.5	180.2
C19	O1	C18	H24	310.3	60.0
C19	O1	C18	H25	69.8	300.0
O1	C19	C20	C21	181.3	179.7
O1	C19	C20	H30	1.3	359.9
O1	C18	C17	H15	196.6	54.9
H24	C18	O1	H25	240.6	120.0
C19	C20	C21	H29	178.5	180.2
C24	C22	O2	C21	177.2	180.1
C22	O2	C23	H27	229.1	214.3
C22	O2	C23	H28	108.3	91.4
O2	C22	C21	H29	359.0	0.1
C24	C22	C21	O2	183.0	179.9
C19	C20	C21	C22	358.4	0.6
C20	C21	C22	H29	180.0	179.6
C18	C17	C13	H14	63.2	57.6
C13	C17	C18	H15	119.7	120.0
C16	C17	C18	H15	243.9	239.8
C18	C17	C16	H16	295.4	300.9
C18	C17	C16	H17	55.6	60.9
C19	C20	C21	H30	180.0	180.3
C22	C21	C20	H29	180.0	180.4
C16	C17	C13	C14	57.7	57.7
C16	C17	C13	H14	300.2	297.7
C13	C17	C16	H15	243.2	240.1
C18	C17	C16	H15	116.3	120.2
N3	C16	C17	H16	240.1	240.0
N3	C16	C17	H17	119.9	120.0
C17	C16	N3	H18	301.7	297.6
H16	C16	C17	H17	239.7	240.0
C13	C14	C15	N3	64.7	59.2
C15	N3	C16	H16	302.0	301.7
C15	N3	C16	H17	181.8	181.8
C16	N3	C15	H18	239.8	235.9
N3	C16	C17	H15	59.2	60.8
C17	C16	N3	H16	119.9	120.0
C17	C16	N3	H17	240.1	239.9
C15	N3	C16	H18	120.2	124.1
H16	C16	N3	H17	120.3	120.0
H1	N	C7	C6	4.8	0.2
H2	C8	N	H1	121.3	120.0
C9	C8	H2	H3	242.4	240.0
H2	C8	C9	H4	290.8	179.9
H2	C8	C9	H5	170.9	300.0
H3	C8	N	H1	239.8	240.0
C9	C8	H3	H2	117.6	120.0
H3	C8	C9	H4	172.4	60.0
H3	C8	C9	H5	52.4	180.0
C10	C9	H4	H5	119.9	240.0
H4	C9	C8	H2	290.8	179.9
H4	C9	C8	H3	172.4	60.0
C8	C9	H4	H5	240.1	120.1
C10	C9	H5	H4	240.1	119.9
H5	C9	C8	H2	170.9	300.0
H5	C9	C8	H3	52.4	180.0
C8	C9	H5	H4	119.9	240.0
H6	C12	C10	C11	179.4	180.0
H7	N2	C12	H6	1.1	360.0
H7	N2	N1	C11	178.7	180.0
C10	C11	H8	N1	180.0	180.3
C7	C6	H9	C5	238.4	240.0
C7	C6	H9	H10	119.2	119.9
H9	C6	C5	C4	147.2	340.1
C5	C6	H9	H10	240.8	239.9
C7	C6	H10	C5	121.6	120.0
C7	C6	H10	H9	240.7	240.0
H10	C6	C5	C4	27.7	220.0
C5	C6	H10	H9	119.2	120.1
C5	C4	H11	C3	180.0	180.0
H11	C4	C3	C13	0.7	0.0
H12	C2	C3	C13	359.5	359.9
C	C1	H13	C2	180.0	180.0
H13	C1	C2	H12	359.8	0.1
C3	C13	H14	C14	240.8	239.9
C3	C13	H14	C17	123.9	120.2
C17	C13	H14	C14	117.0	119.7
H14	C13	C14	C15	56.9	62.3
H14	C13	C14	H22	176.6	182.3
H14	C13	C14	H23	297.1	302.4
H14	C13	C17	C16	300.2	297.7
H14	C13	C17	H15	183.2	177.7
H15	C17	C13	C14	300.8	297.7
C13	C17	H15	C16	118.9	119.8
H15	C17	C13	H14	183.2	177.7
H15	C17	C16	N3	59.2	60.8
H15	C17	C16	H16	179.1	180.7
H15	C17	C16	H17	299.4	300.7
C17	C16	H16	N3	240.8	240.0
H16	C16	C17	H15	179.1	180.7
C17	C16	H16	H17	120.4	120.0
N3	C16	H16	H17	239.6	240.0
H16	C16	N3	H18	181.9	177.7
C17	C16	H17	N3	119.3	120.1
H17	C16	C17	H15	299.4	300.7
C17	C16	H17	H16	239.6	240.0
N3	C16	H17	H16	120.4	119.9
H17	C16	N3	H18	61.6	57.7
H18	N3	C16	H16	181.9	177.7
H18	N3	C16	H17	61.6	57.7
C14	C15	H20	H21	120.8	240.1
H20	C15	N3	H18	294.8	182.4
C14	C15	H21	H20	239.2	120.0
H21	C15	N3	H18	174.2	302.4
C13	C14	H22	C15	241.3	240.2
H22	C14	C13	H14	176.6	182.3
C13	C14	H22	H23	120.6	120.1
H22	C14	C15	H20	64.7	179.2
H22	C14	C15	H21	185.3	59.2
C13	C14	H23	C15	118.7	119.8
H23	C14	C13	H14	297.1	302.4
C13	C14	H23	H22	239.4	239.9
H23	C14	C15	H20	304.2	59.1
H23	C14	C15	H21	64.8	299.1
O1	C18	H24	H25	119.2	240.0
H24	C18	C17	H15	76.3	174.9
O1	C18	H25	H24	240.8	120.0
H25	C18	C17	H15	316.9	295.0
H26	C25	C24	C22	179.0	180.0
H26	C25	C19	C20	181.4	180.2
O3	C23	H27	O2	242.3	245.7
O3	C23	H27	H28	121.1	122.8
H27	C23	O2	C22	229.1	214.3
O2	C23	H27	H28	238.8	237.1
O3	C23	H28	O2	117.7	114.3
O3	C23	H28	H27	238.9	237.2
H28	C23	O2	C22	108.3	91.4
O2	C23	H28	H27	121.2	122.9
C19	C20	H30	C21	180.0	179.7
H30	C20	C21	H29	358.5	360.0