PDB Chemical Component SIA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SIA

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.531	1.506
C1	O1A	1.245	1.208
C1	O1B	1.245	1.342
C2	C3	1.523	1.531
C2	O2	1.430	1.429
C2	O6	1.433	1.426
C3	C4	1.521	1.533
C3	H32	1.097	1.090
C3	H31	1.097	1.090
C4	C5	1.526	1.532
C4	O4	1.409	1.429
C4	H4	1.106	1.089
C5	C6	1.532	1.529
C5	N5	1.452	1.464
C5	H5	1.100	1.090
C6	C7	1.540	1.529
C6	O6	1.443	1.427
C6	H6	1.096	1.089
C7	C8	1.530	1.530
C7	O7	1.419	1.429
C7	H7	1.103	1.090
C8	C9	1.549	1.530
C8	O8	1.410	1.428
C8	H8	1.099	1.090
C9	O9	1.419	1.428
C9	H92	1.101	1.090
C9	H91	1.097	1.089
C10	C11	1.520	1.507
C10	N5	1.319	1.347
C10	O10	1.232	1.212
C11	H111	1.095	1.090
C11	H113	1.098	1.090
C11	H112	1.095	1.090
N5	HN5	0.988	0.971
O1B	HO1B	0.950	0.967
O2	HO2	0.977	0.967
O4	HO4	0.978	0.966
O7	HO7	0.982	0.967
O8	HO8	0.967	0.967
O9	HO9	0.977	0.967

Bond Angles for SIA

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1A	111.6	120.0
C2	C1	O1B	133.0	120.0
C1	C2	C3	127.1	109.4
C1	C2	O2	89.4	109.4
C1	C2	O6	102.1	109.4
O1A	C1	O1B	115.1	120.0
C1	O1B	HO1B	132.9	120.0
C3	C2	O2	122.2	109.4
C3	C2	O6	121.0	109.8
C2	C3	C4	112.9	109.0
C2	C3	H32	108.0	109.5
C2	C3	H31	104.1	109.5
O2	C2	O6	83.5	109.5
C2	O2	HO2	103.1	106.7
C2	O6	C6	120.3	107.7
C4	C3	H32	116.5	109.6
C4	C3	H31	124.5	109.5
C3	C4	C5	112.3	108.6
C3	C4	O4	107.1	109.7
C3	C4	H4	104.6	109.6
H32	C3	H31	87.6	109.7
C5	C4	O4	107.7	109.7
C5	C4	H4	113.1	109.6
C4	C5	C6	108.7	109.1
C4	C5	N5	104.8	109.5
C4	C5	H5	110.9	109.5
O4	C4	H4	111.9	109.6
C4	O4	HO4	106.6	106.8
C6	C5	N5	111.2	109.6
C6	C5	H5	110.2	109.6
C5	C6	C7	111.6	109.5
C5	C6	O6	111.0	109.8
C5	C6	H6	108.5	109.4
N5	C5	H5	111.0	109.5
C5	N5	C10	130.7	120.1
C5	N5	HN5	108.5	119.9
C7	C6	O6	104.8	109.4
C7	C6	H6	112.7	109.4
C6	C7	C8	112.4	109.5
C6	C7	O7	111.6	109.5
C6	C7	H7	114.6	109.5
O6	C6	H6	108.2	109.4
C8	C7	O7	106.1	109.5
C8	C7	H7	112.0	109.5
C7	C8	C9	115.7	109.5
C7	C8	O8	104.4	109.5
C7	C8	H8	113.0	109.4
O7	C7	H7	99.1	109.4
C7	O7	HO7	86.5	106.8
C9	C8	O8	106.6	109.5
C9	C8	H8	107.9	109.4
C8	C9	O9	111.0	109.5
C8	C9	H92	104.2	109.5
C8	C9	H91	121.0	109.5
O8	C8	H8	108.9	109.5
C8	O8	HO8	103.8	106.8
O9	C9	H92	106.0	109.5
O9	C9	H91	102.6	109.5
C9	O9	HO9	99.3	106.8
H92	C9	H91	111.3	109.4
C11	C10	N5	116.4	120.0
C11	C10	O10	123.8	120.0
C10	C11	H111	110.0	109.5
C10	C11	H113	108.7	109.5
C10	C11	H112	115.3	109.5
N5	C10	O10	119.8	120.0
C10	N5	HN5	120.7	120.0
H111	C11	H113	104.4	109.5
H111	C11	H112	112.5	109.5
H113	C11	H112	105.2	109.5

Torsion Angles for SIA

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1A	C1	C2	O1B	173.3	180.1
C2	C1	O1B	HO1B	180.0	180.0
C3	C2	C1	O2	131.3	119.8
C3	C2	C1	O6	214.6	239.7
C1	C2	C3	C4	155.8	58.8
C1	C2	C3	H32	25.5	299.0
C1	C2	C3	H31	293.5	178.7
O2	C2	C1	O6	83.2	119.9
C1	C2	O2	HO2	129.1	299.8
C1	C2	O6	C6	192.5	307.5
C2	C1	O1A	O1B	185.4	179.9
O1A	C1	C2	C3	18.3	216.8
O1A	C1	C2	O2	247.0	97.0
O1A	C1	C2	O6	163.8	337.1
O1A	C1	O1B	HO1B	6.9	360.0
C2	C1	O1B	O1A	173.1	180.1
O1B	C1	C2	C3	205.0	36.7
O1B	C1	C2	O2	73.7	277.0
O1B	C1	C2	O6	350.5	157.0
C3	C2	C1	O1A	18.3	216.8
C3	C2	C1	O1B	205.0	36.7
C1	C2	C3	O2	242.5	240.2
C1	C2	C3	O6	139.7	120.0
O2	C2	C3	O6	257.1	239.8
C3	C2	O2	HO2	354.2	180.0
C3	C2	O6	C6	340.6	67.5
C4	C3	C2	H32	130.2	119.9
C4	C3	C2	H31	222.3	240.2
C2	C3	C4	C5	24.4	53.7
C2	C3	C4	O4	142.4	173.6
C2	C3	C4	H4	261.3	294.0
H32	C3	C2	H31	92.1	120.3
O2	C2	C1	O1A	247.0	97.0
O2	C2	C1	O1B	73.7	277.0
C1	C2	O2	C3	134.9	119.8
C1	C2	O2	O6	257.7	240.1
C3	C2	O2	O6	122.8	120.3
O2	C2	C3	C4	273.2	178.6
O2	C2	C3	H32	143.0	58.8
O2	C2	C3	H31	50.9	298.5
O2	C2	O6	C6	104.5	187.6
O6	C2	C1	O1A	163.8	337.1
O6	C2	C1	O1B	350.5	157.0
C1	C2	O6	C3	211.9	240.0
C1	C2	O6	O2	88.0	119.9
C3	C2	O6	O2	236.1	239.9
O6	C2	C3	C4	16.1	298.8
O6	C2	C3	H32	245.8	178.9
O6	C2	C3	H31	153.8	58.6
O6	C2	O2	HO2	231.4	59.7
C5	C6	O6	C2	341.0	292.5
C7	C6	O6	C2	220.4	172.3
C2	O6	C6	H6	99.9	52.6
C4	C3	C2	O2	273.2	178.6
C4	C3	C2	O6	16.1	298.8
C2	C3	C4	H32	234.2	240.2
C2	C3	C4	H31	127.6	119.8
H32	C3	C4	H31	253.4	239.7
C5	C4	C3	O4	241.9	240.1
C5	C4	C3	H4	123.0	119.7
C3	C4	C5	C6	298.4	306.3
C3	C4	C5	N5	179.5	186.4
C3	C4	C5	H5	59.7	66.2
O4	C4	C3	H4	241.1	239.6
C3	C4	O4	HO4	84.4	60.8
H32	C3	C2	O2	143.0	58.8
H32	C3	C2	O6	245.8	178.9
C2	C3	H32	C4	128.2	119.5
C2	C3	H32	H31	256.0	239.8
C4	C3	H32	H31	127.8	120.3
H32	C3	C4	C5	150.1	173.5
H32	C3	C4	O4	268.2	293.4
H32	C3	C4	H4	27.1	53.8
H31	C3	C2	O2	50.9	298.5
H31	C3	C2	O6	153.8	58.6
C2	C3	H31	C4	228.8	240.5
C2	C3	H31	H32	107.9	120.2
C4	C3	H31	H32	239.1	239.7
H31	C3	C4	C5	256.8	293.9
H31	C3	C4	O4	14.8	53.7
H31	C3	C4	H4	133.7	174.1
C5	C4	C3	H32	150.1	173.5
C5	C4	C3	H31	256.8	293.9
C3	C4	C5	O4	117.7	119.9
C3	C4	C5	H4	241.9	240.3
O4	C4	C5	H4	124.2	120.4
C5	C4	O4	HO4	205.4	180.0
C6	C5	C4	N5	118.9	119.9
C6	C5	C4	H5	238.7	240.1
C4	C5	C6	C7	174.9	181.2
C4	C5	C6	O6	58.4	61.2
C4	C5	C6	H6	299.7	301.1
N5	C5	C4	H5	119.8	120.1
C4	C5	N5	C10	238.3	269.9
C4	C5	N5	HN5	53.9	89.8
O4	C4	C3	H32	268.2	293.4
O4	C4	C3	H31	14.8	53.7
C3	C4	O4	C5	239.0	240.8
C3	C4	O4	H4	114.0	120.4
C5	C4	O4	H4	235.1	239.6
O4	C4	C5	C6	180.8	186.4
O4	C4	C5	N5	61.9	66.5
O4	C4	C5	H5	302.0	306.3
H4	C4	C3	H32	27.1	53.8
H4	C4	C3	H31	133.7	174.1
C3	C4	H4	C5	122.5	119.1
C3	C4	H4	O4	244.4	239.6
C5	C4	H4	O4	121.9	120.4
H4	C4	C5	C6	56.5	66.0
H4	C4	C5	N5	297.6	306.1
H4	C4	C5	H5	177.8	185.9
H4	C4	O4	HO4	330.4	300.4
C2	O6	C6	C5	341.0	292.5
C6	C5	C4	O4	180.8	186.4
C6	C5	C4	H4	56.5	66.0
C4	C5	C6	N5	245.2	240.1
C4	C5	C6	H5	121.7	119.9
N5	C5	C6	H5	236.5	239.8
C6	C5	N5	C10	121.1	150.2
C6	C5	N5	HN5	296.7	330.2
C7	C6	C5	O6	116.5	120.1
C7	C6	C5	H6	235.2	240.1
C5	C6	C7	C8	179.3	179.6
C5	C6	C7	O7	298.4	299.7
C5	C6	C7	H7	50.0	59.6
O6	C6	C5	H6	118.7	120.0
N5	C5	C4	O4	61.9	66.5
N5	C5	C4	H4	297.6	306.1
C4	C5	N5	C6	117.2	119.7
C4	C5	N5	H5	240.2	239.9
C6	C5	N5	H5	123.0	120.2
N5	C5	C6	C7	289.7	301.1
N5	C5	C6	O6	173.2	181.1
N5	C5	C6	H6	54.5	61.0
C11	C10	N5	C5	178.0	180.0
C5	N5	C10	O10	356.3	0.0
C10	N5	C5	HN5	184.4	180.0
H5	C5	C4	O4	302.0	306.3
H5	C5	C4	H4	177.8	185.9
C4	C5	H5	C6	239.6	240.3
C4	C5	H5	N5	116.0	120.1
C6	C5	H5	N5	236.4	239.8
H5	C5	C6	C7	53.2	61.3
H5	C5	C6	O6	296.7	301.2
H5	C5	C6	H6	178.0	181.2
H5	C5	N5	C10	358.1	30.0
H5	C5	N5	HN5	173.7	210.0
C2	O6	C6	C7	220.4	172.3
C7	C6	C5	N5	289.7	301.1
C7	C6	C5	H5	53.2	61.3
C5	C6	C7	O6	239.8	239.6
C5	C6	C7	H6	122.4	119.9
O6	C6	C7	H6	242.6	240.2
C8	C7	C6	O7	240.9	240.0
C8	C7	C6	H7	129.4	120.1
C6	C7	C8	C9	189.7	180.0
C6	C7	C8	O8	306.4	300.0
C6	C7	C8	H8	64.5	60.1
O7	C7	C6	H7	248.4	240.1
C6	C7	O7	HO7	334.5	300.0
O6	C6	C5	N5	173.2	181.1
O6	C6	C5	H5	296.7	301.2
C5	C6	O6	C7	120.6	120.2
C5	C6	O6	H6	241.1	240.0
C7	C6	O6	H6	120.5	119.8
O6	C6	C7	C8	299.5	300.0
O6	C6	C7	O7	58.6	60.0
O6	C6	C7	H7	170.2	179.9
H6	C6	C5	N5	54.5	61.0
H6	C6	C5	H5	178.0	181.2
C5	C6	H6	C7	235.9	240.1
C5	C6	H6	O6	120.5	120.3
C7	C6	H6	O6	244.6	240.2
H6	C6	C7	C8	56.9	59.8
H6	C6	C7	O7	176.0	179.8
H6	C6	C7	H7	287.6	299.7
C8	C7	C6	O6	299.5	300.0
C8	C7	C6	H6	56.9	59.8
C6	C7	C8	O7	122.2	120.0
C6	C7	C8	H7	229.3	240.0
O7	C7	C8	H7	107.1	119.9
C8	C7	O7	HO7	97.2	60.0
C9	C8	C7	O8	243.3	240.0
C9	C8	C7	H8	125.1	119.9
C7	C8	C9	O9	61.1	180.0
C7	C8	C9	H92	307.4	300.0
C7	C8	C9	H91	181.3	60.0
O8	C8	C7	H8	241.9	240.0
C7	C8	O8	HO8	213.4	300.0
O7	C7	C6	O6	58.6	60.0
O7	C7	C6	H6	176.0	179.8
C6	C7	O7	C8	237.3	239.9
C6	C7	O7	H7	121.1	120.0
C8	C7	O7	H7	243.8	240.0
O7	C7	C8	C9	67.4	60.0
O7	C7	C8	O8	184.2	180.0
O7	C7	C8	H8	302.3	300.0
H7	C7	C6	O6	170.2	179.9
H7	C7	C6	H6	287.6	299.7
C6	C7	H7	C8	129.5	120.1
C6	C7	H7	O7	241.1	240.0
C8	C7	H7	O7	111.6	120.0
H7	C7	C8	C9	320.3	300.1
H7	C7	C8	O8	77.1	60.1
H7	C7	C8	H8	195.2	180.1
H7	C7	O7	HO7	213.4	180.0
C9	C8	C7	O7	67.4	60.0
C9	C8	C7	H7	320.3	300.1
C7	C8	C9	O8	115.5	120.0
C7	C8	C9	H8	232.3	240.0
O8	C8	C9	H8	116.8	120.0
C9	C8	O8	HO8	336.3	60.0
O9	C9	C8	H92	113.7	240.0
O9	C9	C8	H91	239.8	120.0
C8	C9	O9	HO9	28.5	180.0
H92	C9	C8	H91	126.1	240.1
O8	C8	C7	O7	184.2	180.0
O8	C8	C7	H7	77.1	60.1
C7	C8	O8	C9	237.1	240.0
C7	C8	O8	H8	121.0	120.0
C9	C8	O8	H8	243.9	240.0
O8	C8	C9	O9	305.6	60.0
O8	C8	C9	H92	191.9	180.0
O8	C8	C9	H91	65.8	299.9
H8	C8	C7	O7	302.3	300.0
H8	C8	C7	H7	195.2	180.1
C7	C8	H8	C9	129.3	120.0
C7	C8	H8	O8	244.5	240.0
C9	C8	H8	O8	115.3	120.0
H8	C8	C9	O9	188.8	300.0
H8	C8	C9	H92	75.1	60.0
H8	C8	C9	H91	309.1	179.9
H8	C8	O8	HO8	92.4	180.0
O9	C9	C8	O8	305.6	60.0
O9	C9	C8	H8	188.8	300.0
C8	C9	O9	H92	247.4	120.0
C8	C9	O9	H91	130.7	240.0
H92	C9	O9	H91	243.2	120.0
H92	C9	C8	O8	191.9	180.0
H92	C9	C8	H8	75.1	60.0
C8	C9	H92	O9	117.2	240.0
C8	C9	H92	H91	228.0	120.0
O9	C9	H92	H91	110.8	240.0
H92	C9	O9	HO9	141.1	60.0
H91	C9	C8	O8	65.8	299.9
H91	C9	C8	H8	309.1	179.9
C8	C9	H91	O9	235.7	120.0
C8	C9	H91	H92	122.8	240.0
O9	C9	H91	H92	247.1	120.0
H91	C9	O9	HO9	257.8	300.0
C5	N5	C10	C11	178.0	180.0
N5	C10	C11	O10	178.3	180.0
C11	C10	N5	HN5	2.9	0.0
H111	C11	C10	H113	113.8	240.0
H111	C11	C10	H112	231.5	120.0
H113	C11	C10	H112	117.7	240.0
C10	N5	C5	H5	358.1	30.0
C5	N5	C10	HN5	175.1	180.0
C11	C10	N5	O10	181.6	180.0
N5	C10	C11	H111	47.4	180.0
N5	C10	C11	H113	293.7	300.0
N5	C10	C11	H112	175.9	60.0
C11	C10	O10	N5	178.2	180.0
O10	C10	C11	H111	229.2	360.0
O10	C10	C11	H113	115.4	120.0
O10	C10	C11	H112	357.6	240.0
O10	C10	N5	HN5	181.2	180.0
H111	C11	C10	N5	47.4	180.0
H111	C11	C10	O10	229.2	360.0
C10	C11	H111	H113	243.5	120.0
C10	C11	H111	H112	130.0	240.0
H113	C11	H111	H112	246.5	120.0
H113	C11	C10	N5	293.7	300.0
H113	C11	C10	O10	115.4	120.0
C10	C11	H113	H111	117.4	240.0
C10	C11	H113	H112	236.0	120.0
H111	C11	H113	H112	118.6	240.0
H112	C11	C10	N5	175.9	60.0
H112	C11	C10	O10	357.6	240.0
C10	C11	H112	H111	232.8	120.0
C10	C11	H112	H113	119.7	240.0
H111	C11	H112	H113	246.9	120.0
HN5	N5	C5	H5	173.7	210.0
C5	N5	HN5	C10	183.9	180.0
HN5	N5	C10	O10	181.2	180.0
HO2	O2	C2	O6	231.4	59.7
HO4	O4	C4	H4	330.4	300.4
HO7	O7	C7	H7	213.4	180.0
HO8	O8	C8	H8	92.4	180.0
HO9	O9	C9	H92	141.1	60.0
HO9	O9	C9	H91	257.8	300.0