PDB Chemical Component SI5

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SI5

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C17	N4	1.456	1.465
N4	C16	1.337	1.349
N4	N3	1.389	1.401
C16	C10	1.402	1.353
N3	C15	1.322	1.308
C10	C15	1.430	1.399
C10	C8	1.494	1.507
C8	C9	1.518	1.531
C8	O1	1.405	1.430
C9	C12	1.534	1.532
C12	C13	1.528	1.532
C12	C11	1.564	1.524
C13	S1	1.807	1.813
O1	C7	1.433	1.429
F1	C6	1.353	1.351
S1	C14	1.799	1.758
C7	C11	1.566	1.533
C11	C1	1.543	1.507
C11	N1	1.477	1.446
C6	C1	1.389	1.385
C6	C5	1.370	1.384
C14	N1	1.307	1.272
C14	N2	1.337	1.376
C1	C2	1.389	1.382
C5	C4	1.370	1.384
C2	C3	1.381	1.381
C4	C3	1.364	1.385
C4	F2	1.361	1.351
C2	H1	1.080	1.081
C3	H2	1.080	1.080
C5	H3	1.080	1.080
C7	H4	1.100	1.090
C7	H5	1.100	1.090
C8	H6	1.100	1.090
C9	H7	1.100	1.090
C9	H8	1.100	1.090
C12	H9	1.101	1.090
C13	H10	1.100	1.090
C13	H11	1.100	1.090
N2	H12	1.000	0.970
N2	H13	1.000	0.970
C15	H14	1.080	1.080
C16	H15	1.080	1.080
C17	H16	1.100	1.090
C17	H17	1.100	1.091
C17	H18	1.100	1.090

Bond Angles for SI5

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N4	C16	H15	126.8	126.1
N3	C15	H14	124.7	126.0
C10	C15	H14	124.7	125.9
C10	C8	H6	110.3	109.5
C8	C9	C12	108.1	109.1
C9	C8	H6	110.0	109.5
C8	C9	H7	109.8	109.5
C8	C9	H8	109.8	109.6
C9	C12	C13	112.1	109.4
C9	C12	C11	110.9	109.4
C12	C9	H7	109.8	109.5
C12	C9	H8	109.8	109.5
C9	C12	H9	107.6	109.5
C12	C13	S1	115.6	108.0
C13	C12	H9	107.7	109.5
C12	C13	H10	107.9	109.7
C12	C13	H11	107.9	109.8
C12	C11	N1	113.9	112.6
C13	S1	C14	100.2	99.6
S1	C13	H10	107.9	109.8
S1	C13	H11	107.9	109.8
O1	C7	C11	111.6	109.3
O1	C7	H4	108.9	109.5
O1	C7	H5	108.9	109.6
S1	C14	N1	128.1	123.6
S1	C14	N2	111.8	118.1
C7	C11	N1	101.6	110.2
C11	C7	H4	108.9	109.5
C11	C7	H5	109.0	109.5
C11	N1	C14	123.8	129.5
C6	C5	H3	121.6	120.1
N1	C14	N2	120.1	118.3
C14	N2	H12	120.0	120.0
C14	N2	H13	120.0	120.0
C1	C2	C3	121.8	120.1
C1	C2	H1	119.1	119.9
C5	C4	F2	118.3	120.0
C3	C2	H1	119.1	120.0
C2	C3	H2	120.9	120.0
C4	C3	H2	120.9	120.0
H4	C7	H5	109.5	109.5
H7	C9	H8	109.5	109.6
H10	C13	H11	109.4	109.8
H12	N2	H13	120.0	120.0
H16	C17	H17	109.5	109.4
H16	C17	H18	109.5	109.5
H17	C17	H18	109.5	109.5

Torsion Angles for SI5

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C17	N4	C16	H15	0.1	359.6
N4	N3	C15	H14	180.3	180.0
C16	C10	C15	H14	179.7	180.2
C16	C10	C8	H6	264.4	339.6
C10	C15	N3	H14	180.0	179.9
N3	C15	C10	H14	180.0	180.1
C15	C10	C8	H6	85.2	160.0
C10	C8	C9	C12	180.7	177.3
C9	C8	C10	H6	122.6	120.1
C10	C8	C9	H7	300.4	297.1
C10	C8	C9	H8	60.9	57.3
C10	C8	C9	H6	237.2	239.9
C8	C9	C12	C13	180.7	183.2
C8	C9	C12	C11	305.6	303.3
C12	C9	C8	H7	240.2	240.2
C12	C9	C8	H8	119.8	119.9
C8	C9	C12	H9	62.6	63.2
H7	C9	C8	H8	239.5	239.8
C8	O1	C7	C11	59.8	61.1
C8	O1	C7	H4	180.1	181.0
C8	O1	C7	H5	299.5	301.2
C12	C9	C8	H6	303.5	297.4
C8	C9	C12	H7	119.8	119.8
C8	C9	C12	H8	240.2	240.0
C9	C12	C13	S1	66.9	49.7
C13	C12	C9	H9	118.2	120.0
C9	C12	C13	H10	187.8	169.3
C9	C12	C13	H11	306.0	290.1
C9	C12	C11	N1	291.5	294.1
H7	C9	C12	H8	120.5	120.2
C9	C12	C13	C11	124.7	119.9
C13	C12	C9	H7	61.0	63.4
C13	C12	C9	H8	300.5	303.2
C9	C12	C13	H9	241.9	240.0
C13	C12	C11	N1	56.9	54.0
C12	C13	S1	C14	28.9	47.9
S1	C13	C12	H10	239.1	240.4
S1	C13	C12	H11	120.9	119.7
H10	C13	C12	H11	241.8	239.3
C9	C12	C11	C13	234.6	240.1
C11	C12	C9	H7	185.9	183.4
C11	C12	C9	H8	65.4	63.2
C9	C12	C11	H9	117.1	120.0
C7	C11	C12	N1	113.9	122.8
C12	C11	C7	H4	193.1	182.6
C12	C11	C7	H5	73.7	62.5
C12	C11	N1	C14	331.9	341.1
S1	C13	C12	H9	185.0	169.7
C12	C13	S1	H10	120.9	119.6
C12	C13	S1	H11	239.1	240.4
C13	S1	C14	N1	0.1	343.5
C13	S1	C14	N2	180.0	164.1
H10	C13	S1	H11	118.2	120.8
O1	C7	C11	N1	74.8	66.7
C11	C7	O1	H4	239.7	240.1
C11	C7	O1	H5	120.3	119.9
H4	C7	O1	H5	240.6	239.8
F1	C6	C5	H3	358.4	360.0
C14	S1	C13	H10	268.0	288.3
C14	S1	C13	H11	149.9	167.5
C11	N1	C14	S1	0.1	2.5
N1	C14	S1	N2	180.0	179.4
S1	C14	N2	H12	360.0	360.0
S1	C14	N2	H13	180.0	180.0
C9	C12	C11	C7	45.4	56.9
C12	C11	C7	N1	238.6	235.8
O1	C7	C11	H4	120.3	120.0
O1	C7	C11	H5	239.7	240.0
C7	C11	N1	C14	212.7	218.8
H4	C7	C11	H5	119.4	120.1
C11	C1	C2	H1	359.2	359.7
S1	C14	N1	C11	0.1	2.5
N1	C11	C7	H4	314.5	306.8
N1	C11	C7	H5	195.1	186.7
C11	N1	C14	N2	180.1	181.9
C6	C1	C2	H1	179.7	180.0
C6	C5	C4	F2	179.5	180.1
S1	C14	N1	N2	180.0	180.6
N1	C14	N2	H12	180.0	180.5
N1	C14	N2	H13	360.0	0.6
S1	C14	N2	N1	180.0	179.5
H12	N2	C14	H13	180.0	179.9
C3	C2	C1	H1	180.0	180.0
C1	C2	C3	H2	179.8	179.9
C5	C4	C3	H2	180.5	180.0
C1	C2	C3	H1	180.0	180.0
C4	C3	C2	H2	180.0	180.1
C4	C3	C2	H1	179.8	180.0
C2	C3	C4	H2	180.0	179.9
F2	C4	C3	H2	0.8	0.0
C1	C2	H1	C3	180.0	180.0
H1	C2	C3	H2	359.8	360.0
H2	C3	C2	H1	359.8	360.0
H3	C5	C4	F2	359.5	0.1
O1	C7	H4	C11	238.1	240.2
O1	C7	H4	H5	119.0	120.2
H4	C7	C11	N1	314.5	306.8
C11	C7	H4	H5	240.9	240.0
O1	C7	H5	C11	121.9	119.8
O1	C7	H5	H4	241.0	239.8
H5	C7	C11	N1	195.1	186.7
C11	C7	H5	H4	119.1	120.0
H6	C8	C9	C12	303.5	297.4
H6	C8	C9	H7	63.3	57.2
H6	C8	C9	H8	183.7	177.4
C8	C9	H7	C12	241.3	240.4
H7	C9	C8	H6	63.3	57.2
C8	C9	H7	H8	120.6	120.2
H7	C9	C12	C13	61.0	63.4
H7	C9	C12	C11	185.9	183.4
C12	C9	H7	H8	239.3	239.8
H7	C9	C12	H9	302.8	303.4
C8	C9	H8	C12	118.7	119.7
H8	C9	C8	H6	183.7	177.4
C8	C9	H8	H7	239.3	239.8
H8	C9	C12	C13	300.5	303.2
H8	C9	C12	C11	65.4	63.2
C12	C9	H8	H7	120.6	120.2
H8	C9	C12	H9	182.4	183.2
C9	C12	H9	C13	121.0	119.9
C9	C12	H9	C11	240.7	240.1
H9	C12	C9	H7	302.8	303.4
H9	C12	C9	H8	182.4	183.2
H9	C12	C13	S1	185.0	169.7
H9	C12	C13	H10	305.9	289.3
H9	C12	C13	H11	64.1	50.1
H9	C12	C11	N1	174.4	174.1
C12	C13	H10	S1	234.4	241.4
H10	C13	C12	H9	305.9	289.3
C12	C13	H10	H11	117.2	120.7
H10	C13	S1	C14	268.0	288.3
S1	C13	H10	H11	242.8	239.3
C12	C13	H11	S1	125.6	118.6
H11	C13	C12	H9	64.1	50.1
C12	C13	H11	H10	242.8	239.3
H11	C13	S1	C14	149.9	167.5
S1	C13	H11	H10	117.2	120.7
C14	N2	H12	H13	180.0	180.1
C14	N2	H13	H12	180.0	179.9
H17	C17	H16	H18	120.0	119.9
H16	C17	H17	H18	240.0	240.0
H16	C17	H18	H17	120.0	119.9