PDB Chemical Component SHT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SHT

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
S1 CC 1.786 1.813
S1 SK 2.148 2.049
OS3 SG2 1.518 1.420
SG2 OS1 1.539 1.421
SG2 OS2 1.548 1.521
SG2 CD 1.801 1.814
OS2 HO2S 0.950 0.968
CD CC 1.506 1.531
CD HCD1 1.115 1.089
CD HCD2 1.115 1.090
CC HCC1 1.115 1.090
CC HCC2 1.115 1.089
SK CK6 1.718 1.814
CK6 CK5 1.535 1.529
CK6 HK61 1.115 1.091
CK6 HK62 1.115 1.090
CK5 CK4 1.575 1.530
CK5 HK51 1.115 1.090
CK5 HK52 1.116 1.090
CK4 CK3 1.560 1.529
CK4 HK41 1.115 1.090
CK4 HK42 1.115 1.090
CK3 CK2 1.524 1.506
CK3 HK31 1.115 1.090
CK3 HK32 1.115 1.090
CK2 CK1 1.484 1.330
CK2 HC2K 1.115 1.080
CK1 CK 1.496 1.470
CK1 HC1K 1.115 1.079
CK OK 1.325 1.216
CK N 1.331 1.348
N CA 1.445 1.465
N HN 1.020 0.969
CA C 1.513 1.507
CA CB 1.520 1.529
CA HCA 1.115 1.090
C OXT 1.313 1.208
C O 1.315 1.341
O HO 0.950 0.967
CB CG2 1.558 1.530
CB O3' 1.420 1.428
CB HCB 1.114 1.090
CG2 HG21 1.115 1.090
CG2 HG22 1.115 1.089
CG2 HG23 1.115 1.091
O3' P 1.587 1.610
P O1P 1.578 1.480
P O2P 1.584 1.610
P O8P 1.580 1.610
O2P HOP2 0.950 0.967
O8P HOP8 0.950 0.967

Bond Angles for SHT

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CC S1 SK 109.0 100.0
S1 CC CD 109.8 109.5
S1 CC HCC1 112.1 109.5
S1 CC HCC2 112.1 109.4
S1 SK CK6 95.4 100.0
OS3 SG2 OS1 114.2 122.1
OS3 SG2 OS2 114.5 102.8
OS3 SG2 CD 110.9 111.6
OS1 SG2 OS2 106.5 102.8
OS1 SG2 CD 105.9 111.6
OS2 SG2 CD 103.9 103.1
SG2 OS2 HO2S 114.5 106.8
SG2 CD CC 112.9 109.5
SG2 CD HCD1 111.0 109.5
SG2 CD HCD2 111.7 109.5
CC CD HCD1 111.5 109.4
CC CD HCD2 97.5 109.5
CD CC HCC1 112.1 109.4
CD CC HCC2 112.1 109.5
HCD1 CD HCD2 111.7 109.5
HCC1 CC HCC2 98.3 109.4
SK CK6 CK5 122.3 109.5
SK CK6 HK61 107.6 109.4
SK CK6 HK62 107.7 109.5
CK5 CK6 HK61 107.7 109.5
CK5 CK6 HK62 107.6 109.5
CK6 CK5 CK4 116.5 109.5
CK6 CK5 HK51 109.7 109.4
CK6 CK5 HK52 109.7 109.5
HK61 CK6 HK62 102.1 109.4
CK4 CK5 HK51 109.6 109.4
CK4 CK5 HK52 109.7 109.4
CK5 CK4 CK3 108.5 109.5
CK5 CK4 HK41 112.6 109.5
CK5 CK4 HK42 112.6 109.5
HK51 CK5 HK52 100.5 109.5
CK3 CK4 HK41 112.6 109.5
CK3 CK4 HK42 112.6 109.5
CK4 CK3 CK2 111.2 109.5
CK4 CK3 HK31 111.6 109.4
CK4 CK3 HK32 111.6 109.5
HK41 CK4 HK42 97.9 109.4
CK2 CK3 HK31 111.6 109.4
CK2 CK3 HK32 111.6 109.5
CK3 CK2 CK1 122.8 120.0
CK3 CK2 HC2K 107.4 120.0
HK31 CK3 HK32 98.8 109.5
CK1 CK2 HC2K 107.5 120.0
CK2 CK1 CK 118.4 120.0
CK2 CK1 HC1K 109.0 120.0
CK CK1 HC1K 109.0 120.0
CK1 CK OK 117.6 120.0
CK1 CK N 119.9 120.0
OK CK N 121.8 120.0
CK N CA 123.3 120.0
CK N HN 118.3 119.9
CA N HN 118.3 120.0
N CA C 107.6 109.5
N CA CB 115.8 109.5
N CA HCA 107.4 109.4
C CA CB 110.8 109.5
C CA HCA 107.4 109.5
CA C OXT 120.4 120.0
CA C O 117.6 120.0
CB CA HCA 107.5 109.5
CA CB CG2 110.9 109.5
CA CB O3' 111.1 109.5
CA CB HCB 108.1 109.5
OXT C O 121.2 120.0
C O HO 117.7 120.0
CG2 CB O3' 110.4 109.4
CG2 CB HCB 108.1 109.5
CB CG2 HG21 110.9 109.5
CB CG2 HG22 111.7 109.5
CB CG2 HG23 111.7 109.5
O3' CB HCB 108.1 109.5
CB O3' P 127.1 106.8
HG21 CG2 HG22 111.7 109.5
HG21 CG2 HG23 111.6 109.4
HG22 CG2 HG23 98.7 109.5
O3' P O1P 106.8 109.5
O3' P O2P 104.3 109.5
O3' P O8P 105.1 109.5
O1P P O2P 109.3 109.5
O1P P O8P 116.3 109.4
O2P P O8P 114.1 109.5
P O2P HOP2 104.3 106.8
P O8P HOP8 105.1 106.8

Torsion Angles for SHT

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CC S1 SK CK6 85.4 90.0
SG2 CD CC S1 146.6 180.0
S1 CC CD HCD1 272.3 300.0
S1 CC CD HCD2 29.3 60.0
CD CC S1 HCC1 125.3 240.0
CD CC S1 HCC2 234.7 120.1
HCC1 CC S1 HCC2 109.5 240.0
SK S1 CC CD 83.8 60.0
SK S1 CC HCC1 318.5 180.0
SK S1 CC HCC2 209.1 300.0
S1 SK CK6 CK5 243.8 60.0
S1 SK CK6 HK61 118.6 300.0
S1 SK CK6 HK62 9.1 180.0
OS1 SG2 OS3 OS2 123.2 114.3
OS1 SG2 OS3 CD 240.4 224.3
OS2 SG2 OS3 CD 117.2 110.0
OS3 SG2 OS2 HO2S 180.0 63.8
OS3 SG2 CD CC 306.0 289.8
OS3 SG2 CD HCD1 180.0 169.8
OS3 SG2 CD HCD2 54.7 49.7
OS3 SG2 OS1 OS2 232.5 245.7
OS3 SG2 OS1 CD 122.4 135.8
OS2 SG2 OS1 CD 249.8 250.1
OS1 SG2 OS2 HO2S 52.7 296.2
OS1 SG2 CD CC 70.5 70.3
OS1 SG2 CD HCD1 304.5 310.3
OS1 SG2 CD HCD2 179.2 190.2
OS3 SG2 OS2 OS1 127.3 127.6
OS3 SG2 OS2 CD 238.8 243.8
OS1 SG2 OS2 CD 111.5 116.2
OS2 SG2 CD CC 182.5 180.0
OS2 SG2 CD HCD1 56.4 60.0
OS2 SG2 CD HCD2 291.2 300.0
S1 CC CD SG2 146.6 180.0
OS3 SG2 CD OS1 235.5 219.5
OS3 SG2 CD OS2 123.6 109.8
OS1 SG2 CD OS2 248.0 250.3
CD SG2 OS2 HO2S 301.2 180.0
CC CD SG2 HCD1 126.0 120.0
CC CD SG2 HCD2 251.3 240.0
SG2 CD CC HCC1 271.9 60.0
SG2 CD CC HCC2 21.4 300.0
HCD1 CD SG2 HCD2 125.3 120.0
HO2S OS2 SG2 CD 301.2 180.0
CD CC S1 SK 83.8 60.0
S1 CC CD HCC1 234.7 120.0
S1 CC CD HCC2 125.2 240.0
SG2 CD CC HCD1 234.3 240.0
SG2 CD CC HCD2 117.4 120.0
HCD1 CD CC HCD2 243.1 240.0
HCC1 CC CD HCC2 250.5 120.0
SG2 CD HCD1 CC 126.8 120.0
SG2 CD HCD1 HCD2 234.7 240.0
CC CD HCD1 HCD2 108.0 120.0
HCD1 CD CC HCC1 37.6 180.0
HCD1 CD CC HCC2 147.1 60.0
SG2 CD HCD2 CC 241.7 240.0
SG2 CD HCD2 HCD1 124.9 120.0
CC CD HCD2 HCD1 243.2 240.0
HCD2 CD CC HCC1 154.5 300.0
HCD2 CD CC HCC2 264.0 180.0
HCC1 CC S1 SK 318.5 180.0
S1 CC HCC1 CD 124.0 240.0
S1 CC HCC1 HCC2 242.0 120.0
HCC1 CC CD HCD1 37.6 180.0
HCC1 CC CD HCD2 154.5 300.0
CD CC HCC1 HCC2 118.0 240.0
HCC2 CC S1 SK 209.1 300.0
S1 CC HCC2 CD 236.0 120.0
S1 CC HCC2 HCC1 118.0 240.0
HCC2 CC CD HCD1 147.1 60.0
HCC2 CC CD HCD2 264.0 180.0
CD CC HCC2 HCC1 242.0 120.0
CK5 CK6 SK HK61 125.3 120.0
CK5 CK6 SK HK62 234.7 240.0
SK CK6 CK5 CK4 176.0 180.0
SK CK6 CK5 HK51 50.8 60.0
SK CK6 CK5 HK52 301.3 300.0
HK61 CK6 SK HK62 109.4 120.0
SK CK6 CK5 HK61 234.7 240.0
SK CK6 CK5 HK62 125.3 120.0
HK61 CK6 CK5 HK62 250.6 240.0
CK4 CK5 CK6 HK51 125.2 120.0
CK4 CK5 CK6 HK52 234.7 240.0
CK6 CK5 CK4 CK3 66.9 180.0
CK6 CK5 CK4 HK41 301.7 60.0
CK6 CK5 CK4 HK42 192.2 300.0
HK51 CK5 CK6 HK52 109.5 120.1
SK CK6 HK61 CK5 133.6 120.0
SK CK6 HK61 HK62 246.8 240.0
CK5 CK6 HK61 HK62 113.2 120.0
HK61 CK6 CK5 CK4 301.3 300.0
HK61 CK6 CK5 HK51 176.1 180.0
HK61 CK6 CK5 HK52 66.6 60.0
SK CK6 HK62 CK5 226.4 240.0
SK CK6 HK62 HK61 113.2 120.0
CK5 CK6 HK62 HK61 246.8 240.0
HK62 CK6 CK5 CK4 50.8 60.0
HK62 CK6 CK5 HK51 285.5 300.0
HK62 CK6 CK5 HK52 176.0 180.0
CK4 CK5 CK6 HK61 301.3 300.0
CK4 CK5 CK6 HK62 50.8 60.0
CK6 CK5 CK4 HK51 234.8 240.0
CK6 CK5 CK4 HK52 125.3 120.0
HK51 CK5 CK4 HK52 250.5 240.0
CK3 CK4 CK5 HK41 125.2 120.0
CK3 CK4 CK5 HK42 234.7 240.0
CK5 CK4 CK3 CK2 73.4 180.0
CK5 CK4 CK3 HK31 308.1 60.0
CK5 CK4 CK3 HK32 198.6 300.0
HK41 CK4 CK5 HK42 109.5 119.9
HK51 CK5 CK6 HK61 176.1 180.0
HK51 CK5 CK6 HK62 285.5 300.0
CK6 CK5 HK51 CK4 129.1 120.0
CK6 CK5 HK51 HK52 244.5 240.0
CK4 CK5 HK51 HK52 115.5 120.0
HK51 CK5 CK4 CK3 192.1 300.0
HK51 CK5 CK4 HK41 66.9 179.9
HK51 CK5 CK4 HK42 317.4 60.0
HK52 CK5 CK6 HK61 66.6 60.0
HK52 CK5 CK6 HK62 176.0 180.0
CK6 CK5 HK52 CK4 230.9 240.0
CK6 CK5 HK52 HK51 115.5 120.0
CK4 CK5 HK52 HK51 244.6 240.0
HK52 CK5 CK4 CK3 301.6 60.0
HK52 CK5 CK4 HK41 176.4 300.0
HK52 CK5 CK4 HK42 66.9 180.0
CK3 CK4 CK5 HK51 192.1 300.0
CK3 CK4 CK5 HK52 301.6 60.0
CK5 CK4 CK3 HK41 234.8 240.0
CK5 CK4 CK3 HK42 125.3 120.0
HK41 CK4 CK3 HK42 250.5 240.0
CK2 CK3 CK4 HK31 125.3 119.9
CK2 CK3 CK4 HK32 234.8 240.0
CK4 CK3 CK2 CK1 55.1 120.0
CK4 CK3 CK2 HC2K 289.8 300.0
HK31 CK3 CK4 HK32 109.5 120.1
HK41 CK4 CK5 HK51 66.9 179.9
HK41 CK4 CK5 HK52 176.4 300.0
CK5 CK4 HK41 CK3 123.0 120.0
CK5 CK4 HK41 HK42 241.5 240.0
CK3 CK4 HK41 HK42 118.5 120.0
HK41 CK4 CK3 CK2 198.6 300.0
HK41 CK4 CK3 HK31 73.4 180.1
HK41 CK4 CK3 HK32 323.9 60.0
HK42 CK4 CK5 HK51 317.4 60.0
HK42 CK4 CK5 HK52 66.9 180.0
CK5 CK4 HK42 CK3 237.0 240.0
CK5 CK4 HK42 HK41 118.5 120.0
CK3 CK4 HK42 HK41 241.5 240.0
HK42 CK4 CK3 CK2 308.1 60.0
HK42 CK4 CK3 HK31 182.8 300.0
HK42 CK4 CK3 HK32 73.4 180.0
CK2 CK3 CK4 HK41 198.6 300.0
CK2 CK3 CK4 HK42 308.1 60.0
CK4 CK3 CK2 HK31 234.8 240.0
CK4 CK3 CK2 HK32 125.3 120.0
HK31 CK3 CK2 HK32 250.5 240.0
CK1 CK2 CK3 HC2K 125.3 180.0
CK3 CK2 CK1 CK 160.3 180.0
CK3 CK2 CK1 HC1K 35.1 0.0
HK31 CK3 CK4 HK41 73.4 180.1
HK31 CK3 CK4 HK42 182.8 300.0
CK4 CK3 HK31 CK2 125.0 120.0
CK4 CK3 HK31 HK32 242.5 240.0
CK2 CK3 HK31 HK32 117.5 120.0
HK31 CK3 CK2 CK1 180.4 239.9
HK31 CK3 CK2 HC2K 55.1 60.0
HK32 CK3 CK4 HK41 323.9 60.0
HK32 CK3 CK4 HK42 73.4 180.0
CK4 CK3 HK32 CK2 235.0 240.0
CK4 CK3 HK32 HK31 117.5 120.0
CK2 CK3 HK32 HK31 242.5 240.0
HK32 CK3 CK2 CK1 289.8 360.0
HK32 CK3 CK2 HC2K 164.6 180.0
CK1 CK2 CK3 HK31 180.4 239.9
CK1 CK2 CK3 HK32 289.8 360.0
CK3 CK2 CK1 HC2K 234.8 180.0
CK CK1 CK2 HC1K 125.3 180.0
CK2 CK1 CK OK 26.0 0.1
CK2 CK1 CK N 196.4 180.0
HC2K CK2 CK3 HK31 55.1 60.0
HC2K CK2 CK3 HK32 164.6 180.0
CK3 CK2 HC2K CK1 134.0 180.0
HC2K CK2 CK1 CK 285.6 360.0
HC2K CK2 CK1 HC1K 160.3 180.0
CK CK1 CK2 HC2K 285.6 360.0
CK2 CK1 CK HC1K 234.7 180.0
OK CK CK1 N 189.6 180.1
CK1 CK N CA 173.4 180.0
CK1 CK N HN 353.4 0.1
HC1K CK1 CK2 HC2K 160.3 180.0
CK2 CK1 HC1K CK 130.6 180.0
HC1K CK1 CK OK 151.3 180.1
HC1K CK1 CK N 321.6 360.0
OK CK CK1 HC1K 151.3 180.1
CK1 CK OK N 170.2 179.9
OK CK N CA 343.4 359.9
OK CK N HN 163.4 180.0
N CK CK1 HC1K 321.6 360.0
CK1 CK N OK 190.0 180.1
CA N CK HN 180.0 179.9
CK N CA C 233.0 270.0
CK N CA CB 108.4 150.1
CK N CA HCA 348.4 30.0
CK N CA HN 180.0 180.1
C CA N CB 124.6 120.0
C CA N HCA 244.6 240.0
N CA C OXT 324.7 150.0
N CA C O 154.7 330.0
CB CA N HCA 120.0 120.0
N CA CB CG2 305.8 300.0
N CA CB O3' 69.1 60.0
N CA CB HCB 187.5 180.0
CK N HN CA 180.0 179.9
HN N CA C 52.9 90.0
HN N CA CB 288.4 330.0
HN N CA HCA 168.3 209.9
C CA N HN 52.9 90.0
N CA C CB 232.5 240.0
N CA C HCA 115.4 120.0
CB CA C HCA 242.9 240.0
C CA CB CG2 182.9 180.0
C CA CB O3' 306.2 300.0
C CA CB HCB 64.6 60.0
OXT C CA O 170.0 180.0
CA C O HO 180.0 180.0
CB CA N HN 288.4 330.0
N CA CB C 122.9 120.0
N CA CB HCA 240.0 240.0
C CA CB HCA 117.1 120.0
CB CA C OXT 92.2 270.0
CB CA C O 282.2 90.0
CG2 CB CA O3' 236.8 240.0
CG2 CB CA HCB 118.3 120.0
CA CB CG2 HG21 180.0 60.0
CA CB CG2 HG22 54.8 180.0
CA CB CG2 HG23 305.2 300.0
O3' CB CA HCB 241.5 240.0
CA CB O3' P 140.0 120.0
HCA CA N HN 168.3 209.9
N CA HCA C 244.5 240.0
N CA HCA CB 125.2 120.0
C CA HCA CB 240.7 240.0
HCA CA C OXT 209.3 30.1
HCA CA C O 39.3 210.0
HCA CA CB CG2 65.9 60.0
HCA CA CB O3' 189.1 180.0
HCA CA CB HCB 307.5 300.0
OXT C CA CB 92.2 270.0
OXT C CA HCA 209.3 30.1
CA C OXT O 190.4 180.0
OXT C O HO 10.1 359.9
O C CA CB 282.2 90.0
O C CA HCA 39.3 210.0
CA C O OXT 169.9 180.0
CG2 CB CA HCA 65.9 60.0
CA CB CG2 O3' 123.7 120.0
CA CB CG2 HCB 241.7 240.0
O3' CB CG2 HCB 118.0 120.0
CG2 CB O3' P 263.6 240.0
HG21 CG2 CB HG22 125.3 240.0
HG21 CG2 CB HG23 234.8 120.0
HG22 CG2 CB HG23 109.5 240.0
O3' CB CA HCA 189.1 180.0
CA CB O3' CG2 236.5 240.0
CA CB O3' HCB 118.4 120.0
CG2 CB O3' HCB 242.0 240.0
O3' CB CG2 HG21 56.4 300.0
O3' CB CG2 HG22 291.1 60.0
O3' CB CG2 HG23 181.6 180.0
CB O3' P O1P 314.0 60.0
CB O3' P O2P 69.6 180.0
CB O3' P O8P 189.9 300.0
HCB CB CA HCA 307.5 300.0
CA CB HCB CG2 120.1 120.0
CA CB HCB O3' 239.6 240.0
CG2 CB HCB O3' 119.5 120.0
HCB CB CG2 HG21 298.3 180.0
HCB CB CG2 HG22 173.1 300.0
HCB CB CG2 HG23 63.6 60.0
HCB CB O3' P 21.6 0.0
HG21 CG2 CB O3' 56.4 300.0
HG21 CG2 CB HCB 298.3 180.0
CB CG2 HG21 HG22 234.7 120.1
CB CG2 HG21 HG23 125.2 240.0
HG22 CG2 HG21 HG23 250.5 120.0
HG22 CG2 CB O3' 291.1 60.0
HG22 CG2 CB HCB 173.1 300.0
CB CG2 HG22 HG21 124.9 239.9
CB CG2 HG22 HG23 242.4 120.0
HG21 CG2 HG22 HG23 117.6 240.1
HG23 CG2 CB O3' 181.6 180.0
HG23 CG2 CB HCB 63.6 60.0
CB CG2 HG23 HG21 235.2 120.0
CB CG2 HG23 HG22 117.6 240.0
HG21 CG2 HG23 HG22 242.4 120.0
P O3' CB HCB 21.6 0.0
O1P P O3' O2P 244.3 240.0
O1P P O3' O8P 124.1 120.0
O2P P O3' O8P 239.7 240.0
O3' P O2P HOP2 180.0 180.0
O3' P O8P HOP8 180.0 300.0
O3' P O1P O2P 112.2 120.0
O3' P O1P O8P 243.1 240.0
O2P P O1P O8P 130.9 120.0
O1P P O2P HOP2 293.9 300.1
O1P P O8P HOP8 62.2 180.0
O3' P O2P O1P 246.1 239.9
O3' P O2P O8P 114.1 120.0
O1P P O2P O8P 227.9 240.1
O2P P O8P HOP8 293.6 60.0
O3' P O8P O1P 117.8 120.0
O3' P O8P O2P 246.4 240.0
O1P P O8P O2P 128.6 119.9
O8P P O2P HOP2 65.9 60.0
HOP2 O2P P O8P 65.9 60.0