PDB Chemical Component SGX

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SGX

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CA H1 1.100 1.095
N H2 1.000 1.006
N CA 1.502 1.442
CA C 1.570 1.514
C O 1.230 1.225
CA CB 1.536 1.521
CB OG 1.436 1.417
OG P2 1.598 1.623
O1 P2 1.581 1.505
P2 N3 1.724 1.693
P2 O2 1.569 1.623
O2 C1 1.403 1.418
C OXT   1.359
N H 1.019 1.005
CB HA1 1.114 1.096
CB HB2 1.115 1.095
N3 H3N1 1.020 1.010
N3 H3N2 1.020 1.010
C1 H1C1 1.115 1.092
C1 H1C2 1.115 1.093
C1 H1C3 1.115 1.093
OXT HA   0.980

Bond Angles for SGX

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N CA H1 104.8 105.3
C CA H1 102.2 110.0
CB CA H1 107.6 111.8
CA N H2 90.0 118.9
H N H2 90.0 120.7
N CA C 115.9 107.3
N CA CB 111.5 111.7
CA N H 180.0 119.0
CA C O 120.1 125.1
C CA CB 113.6 110.6
CA C OXT   112.0
O C OXT   122.8
CA CB OG 113.1 109.2
CA CB HA1 110.9 111.0
CA CB HB2 110.8 111.6
CB OG P2 108.1 118.7
OG CB HA1 110.9 107.8
OG CB HB2 110.9 108.7
OG P2 O1 93.4 113.2
OG P2 N3 155.2 105.7
OG P2 O2 75.0 103.4
O1 P2 N3 109.7 114.2
O1 P2 O2 101.8 112.7
N3 P2 O2 107.5 106.8
P2 N3 H3N1 97.2 120.2
P2 N3 H3N2 155.2 120.2
P2 O2 C1 111.6 120.0
O2 C1 H1C1 111.4 109.5
O2 C1 H1C2 111.4 109.5
O2 C1 H1C3 111.7 109.0
C OXT HA   115.3
HA1 CB HB2 99.5 108.4
H3N1 N3 H3N2 97.2 119.6
H1C1 C1 H1C2 99.0 110.1
H1C1 C1 H1C3 111.4 109.4
H1C2 C1 H1C3 111.4 109.4

Torsion Angles for SGX

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H1 CA N H2 24.0 108.4
N CA H1 C 238.7 244.6
N CA H1 CB 118.8 121.5
H1 CA N H 264.2 274.9
H1 CA C O 316.0 210.0
C CA H1 CB 240.1 236.8
H1 CA C OXT   32.3
H1 CA CB OG 304.2 295.9
H1 CA CB HA1 178.9 177.1
H1 CA CB HB2 69.4 56.1
H2 N CA H1 24.0 108.4
H2 N CA C 272.2 351.2
H2 N CA CB 140.1 229.9
CA N H2 H 180.0 166.3
C CA N H1 248.2 242.9
CB CA N H1 116.1 121.5
H N CA H2 240.2 166.6
N CA C O 69.3 324.0
C CA N CB 132.0 121.3
N CA C OXT   146.4
N CA CB OG 189.8 178.2
N CA CB HA1 64.5 59.4
N CA CB HB2 315.0 298.4
N CA C H1 113.3 114.1
CB CA C H1 244.4 236.1
C CA N H2 272.2 351.2
N CA C CB 229.0 238.0
C CA N H 152.3 157.8
O C CA OXT   177.7
C CA CB OG 56.6 58.7
C CA CB HA1 291.3 300.0
C CA CB HB2 181.9 178.9
CA C OXT HA   177.8
O C CA H1 316.0 210.0
O C CA CB 200.4 86.1
CA C O OXT   182.6
O C OXT HA   0.1
N CA CB H1 245.6 242.3
C CA CB H1 112.4 122.8
CB CA N H2 140.1 229.9
N CA CB C 133.2 119.4
CB CA N H 20.3 36.4
CB CA C O 200.4 86.1
CB CA C OXT   268.4
CA CB OG P2 207.9 180.0
OG CB CA HA1 125.3 118.8
OG CB CA HB2 234.7 239.8
HA1 CB CA HB2 109.5 121.0
OG CB CA H1 304.2 295.9
CA CB OG HA1 234.7 239.3
CA CB OG HB2 125.2 122.0
CB OG P2 O1 67.9 305.7
CB OG P2 N3 268.6 180.0
CB OG P2 O2 169.3 68.0
HA1 CB OG HB2 250.5 242.7
P2 OG CB HA1 333.2 300.7
P2 OG CB HB2 82.6 58.0
O1 P2 OG N3 159.3 125.7
O1 P2 OG O2 258.7 237.7
N3 P2 OG O2 99.4 112.0
OG P2 N3 H3N1 54.7 189.9
OG P2 N3 H3N2 180.0 8.8
OG P2 O2 C1 106.3 51.2
OG P2 O1 N3 189.0 239.0
OG P2 O1 O2 75.4 117.0
N3 P2 O1 O2 246.4 237.9
O1 P2 N3 H3N1 256.8 64.8
O1 P2 N3 H3N2 22.0 243.7
O1 P2 O2 C1 196.7 173.8
OG P2 N3 O1 158.0 125.1
OG P2 N3 O2 267.9 250.3
O1 P2 N3 O2 109.9 125.2
N3 P2 O2 C1 312.0 300.0
H3N1 N3 P2 H3N2 234.8 181.1
OG P2 O2 O1 269.6 237.4
OG P2 O2 N3 154.3 111.2
O1 P2 O2 N3 244.7 233.8
O2 P2 N3 H3N1 146.8 299.5
O2 P2 N3 H3N2 272.0 118.4
P2 O2 C1 H1C1 54.7 103.7
P2 O2 C1 H1C2 305.2 342.9
P2 O2 C1 H1C3 180.0 223.3
H1C1 C1 O2 H1C2 109.5 120.8
H1C1 C1 O2 H1C3 234.7 240.4
H1C2 C1 O2 H1C3 125.2 119.6
OXT C CA H1   32.3
CA C OXT O   177.7
OXT C CA CB   268.4
H N CA H1 264.2 274.9
CA N H H2 119.8 193.7
H N CA C 152.3 157.8
H N CA CB 20.3 36.4
HA1 CB CA H1 178.9 177.1
CA CB HA1 OG 126.5 119.6
CA CB HA1 HB2 243.3 237.1
HA1 CB OG P2 333.2 300.7
OG CB HA1 HB2 116.7 117.5
HB2 CB CA H1 69.4 56.1
CA CB HB2 OG 233.5 239.5
CA CB HB2 HA1 116.7 122.6
HB2 CB OG P2 82.6 58.0
OG CB HB2 HA1 243.3 243.1
H3N1 N3 P2 O2 146.8 299.5
P2 N3 H3N1 H3N2 159.8 178.9
H3N2 N3 P2 O2 272.0 118.4
P2 N3 H3N2 H3N1 234.8 181.1
O2 C1 H1C1 H1C2 242.7 239.5
O2 C1 H1C1 H1C3 125.4 119.4
H1C2 C1 H1C1 H1C3 242.7 239.8
O2 C1 H1C2 H1C1 117.3 120.4
O2 C1 H1C2 H1C3 234.6 240.6
H1C1 C1 H1C2 H1C3 117.3 120.2
O2 C1 H1C3 H1C1 234.7 240.3
O2 C1 H1C3 H1C2 125.3 119.7
H1C1 C1 H1C3 H1C2 250.6 239.3