PDB Chemical Component SGX
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SGX
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
CA |
H1 |
1.100 |
1.095 |
N |
H2 |
1.000 |
1.006 |
N |
CA |
1.502 |
1.442 |
CA |
C |
1.570 |
1.514 |
C |
O |
1.230 |
1.225 |
CA |
CB |
1.536 |
1.521 |
CB |
OG |
1.436 |
1.417 |
OG |
P2 |
1.598 |
1.623 |
O1 |
P2 |
1.581 |
1.505 |
P2 |
N3 |
1.724 |
1.693 |
P2 |
O2 |
1.569 |
1.623 |
O2 |
C1 |
1.403 |
1.418 |
C |
OXT |
|
1.359 |
N |
H |
1.019 |
1.005 |
CB |
HA1 |
1.114 |
1.096 |
CB |
HB2 |
1.115 |
1.095 |
N3 |
H3N1 |
1.020 |
1.010 |
N3 |
H3N2 |
1.020 |
1.010 |
C1 |
H1C1 |
1.115 |
1.092 |
C1 |
H1C2 |
1.115 |
1.093 |
C1 |
H1C3 |
1.115 |
1.093 |
OXT |
HA |
|
0.980 |
Bond Angles for SGX
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N |
CA |
H1 |
104.8 |
105.3 |
C |
CA |
H1 |
102.2 |
110.0 |
CB |
CA |
H1 |
107.6 |
111.8 |
CA |
N |
H2 |
90.0 |
118.9 |
H |
N |
H2 |
90.0 |
120.7 |
N |
CA |
C |
115.9 |
107.3 |
N |
CA |
CB |
111.5 |
111.7 |
CA |
N |
H |
180.0 |
119.0 |
CA |
C |
O |
120.1 |
125.1 |
C |
CA |
CB |
113.6 |
110.6 |
CA |
C |
OXT |
|
112.0 |
O |
C |
OXT |
|
122.8 |
CA |
CB |
OG |
113.1 |
109.2 |
CA |
CB |
HA1 |
110.9 |
111.0 |
CA |
CB |
HB2 |
110.8 |
111.6 |
CB |
OG |
P2 |
108.1 |
118.7 |
OG |
CB |
HA1 |
110.9 |
107.8 |
OG |
CB |
HB2 |
110.9 |
108.7 |
OG |
P2 |
O1 |
93.4 |
113.2 |
OG |
P2 |
N3 |
155.2 |
105.7 |
OG |
P2 |
O2 |
75.0 |
103.4 |
O1 |
P2 |
N3 |
109.7 |
114.2 |
O1 |
P2 |
O2 |
101.8 |
112.7 |
N3 |
P2 |
O2 |
107.5 |
106.8 |
P2 |
N3 |
H3N1 |
97.2 |
120.2 |
P2 |
N3 |
H3N2 |
155.2 |
120.2 |
P2 |
O2 |
C1 |
111.6 |
120.0 |
O2 |
C1 |
H1C1 |
111.4 |
109.5 |
O2 |
C1 |
H1C2 |
111.4 |
109.5 |
O2 |
C1 |
H1C3 |
111.7 |
109.0 |
C |
OXT |
HA |
|
115.3 |
HA1 |
CB |
HB2 |
99.5 |
108.4 |
H3N1 |
N3 |
H3N2 |
97.2 |
119.6 |
H1C1 |
C1 |
H1C2 |
99.0 |
110.1 |
H1C1 |
C1 |
H1C3 |
111.4 |
109.4 |
H1C2 |
C1 |
H1C3 |
111.4 |
109.4 |
Torsion Angles for SGX
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
H1 |
CA |
N |
H2 |
24.0 |
108.4 |
N |
CA |
H1 |
C |
238.7 |
244.6 |
N |
CA |
H1 |
CB |
118.8 |
121.5 |
H1 |
CA |
N |
H |
264.2 |
274.9 |
H1 |
CA |
C |
O |
316.0 |
210.0 |
C |
CA |
H1 |
CB |
240.1 |
236.8 |
H1 |
CA |
C |
OXT |
|
32.3 |
H1 |
CA |
CB |
OG |
304.2 |
295.9 |
H1 |
CA |
CB |
HA1 |
178.9 |
177.1 |
H1 |
CA |
CB |
HB2 |
69.4 |
56.1 |
H2 |
N |
CA |
H1 |
24.0 |
108.4 |
H2 |
N |
CA |
C |
272.2 |
351.2 |
H2 |
N |
CA |
CB |
140.1 |
229.9 |
CA |
N |
H2 |
H |
180.0 |
166.3 |
C |
CA |
N |
H1 |
248.2 |
242.9 |
CB |
CA |
N |
H1 |
116.1 |
121.5 |
H |
N |
CA |
H2 |
240.2 |
166.6 |
N |
CA |
C |
O |
69.3 |
324.0 |
C |
CA |
N |
CB |
132.0 |
121.3 |
N |
CA |
C |
OXT |
|
146.4 |
N |
CA |
CB |
OG |
189.8 |
178.2 |
N |
CA |
CB |
HA1 |
64.5 |
59.4 |
N |
CA |
CB |
HB2 |
315.0 |
298.4 |
N |
CA |
C |
H1 |
113.3 |
114.1 |
CB |
CA |
C |
H1 |
244.4 |
236.1 |
C |
CA |
N |
H2 |
272.2 |
351.2 |
N |
CA |
C |
CB |
229.0 |
238.0 |
C |
CA |
N |
H |
152.3 |
157.8 |
O |
C |
CA |
OXT |
|
177.7 |
C |
CA |
CB |
OG |
56.6 |
58.7 |
C |
CA |
CB |
HA1 |
291.3 |
300.0 |
C |
CA |
CB |
HB2 |
181.9 |
178.9 |
CA |
C |
OXT |
HA |
|
177.8 |
O |
C |
CA |
H1 |
316.0 |
210.0 |
O |
C |
CA |
CB |
200.4 |
86.1 |
CA |
C |
O |
OXT |
|
182.6 |
O |
C |
OXT |
HA |
|
0.1 |
N |
CA |
CB |
H1 |
245.6 |
242.3 |
C |
CA |
CB |
H1 |
112.4 |
122.8 |
CB |
CA |
N |
H2 |
140.1 |
229.9 |
N |
CA |
CB |
C |
133.2 |
119.4 |
CB |
CA |
N |
H |
20.3 |
36.4 |
CB |
CA |
C |
O |
200.4 |
86.1 |
CB |
CA |
C |
OXT |
|
268.4 |
CA |
CB |
OG |
P2 |
207.9 |
180.0 |
OG |
CB |
CA |
HA1 |
125.3 |
118.8 |
OG |
CB |
CA |
HB2 |
234.7 |
239.8 |
HA1 |
CB |
CA |
HB2 |
109.5 |
121.0 |
OG |
CB |
CA |
H1 |
304.2 |
295.9 |
CA |
CB |
OG |
HA1 |
234.7 |
239.3 |
CA |
CB |
OG |
HB2 |
125.2 |
122.0 |
CB |
OG |
P2 |
O1 |
67.9 |
305.7 |
CB |
OG |
P2 |
N3 |
268.6 |
180.0 |
CB |
OG |
P2 |
O2 |
169.3 |
68.0 |
HA1 |
CB |
OG |
HB2 |
250.5 |
242.7 |
P2 |
OG |
CB |
HA1 |
333.2 |
300.7 |
P2 |
OG |
CB |
HB2 |
82.6 |
58.0 |
O1 |
P2 |
OG |
N3 |
159.3 |
125.7 |
O1 |
P2 |
OG |
O2 |
258.7 |
237.7 |
N3 |
P2 |
OG |
O2 |
99.4 |
112.0 |
OG |
P2 |
N3 |
H3N1 |
54.7 |
189.9 |
OG |
P2 |
N3 |
H3N2 |
180.0 |
8.8 |
OG |
P2 |
O2 |
C1 |
106.3 |
51.2 |
OG |
P2 |
O1 |
N3 |
189.0 |
239.0 |
OG |
P2 |
O1 |
O2 |
75.4 |
117.0 |
N3 |
P2 |
O1 |
O2 |
246.4 |
237.9 |
O1 |
P2 |
N3 |
H3N1 |
256.8 |
64.8 |
O1 |
P2 |
N3 |
H3N2 |
22.0 |
243.7 |
O1 |
P2 |
O2 |
C1 |
196.7 |
173.8 |
OG |
P2 |
N3 |
O1 |
158.0 |
125.1 |
OG |
P2 |
N3 |
O2 |
267.9 |
250.3 |
O1 |
P2 |
N3 |
O2 |
109.9 |
125.2 |
N3 |
P2 |
O2 |
C1 |
312.0 |
300.0 |
H3N1 |
N3 |
P2 |
H3N2 |
234.8 |
181.1 |
OG |
P2 |
O2 |
O1 |
269.6 |
237.4 |
OG |
P2 |
O2 |
N3 |
154.3 |
111.2 |
O1 |
P2 |
O2 |
N3 |
244.7 |
233.8 |
O2 |
P2 |
N3 |
H3N1 |
146.8 |
299.5 |
O2 |
P2 |
N3 |
H3N2 |
272.0 |
118.4 |
P2 |
O2 |
C1 |
H1C1 |
54.7 |
103.7 |
P2 |
O2 |
C1 |
H1C2 |
305.2 |
342.9 |
P2 |
O2 |
C1 |
H1C3 |
180.0 |
223.3 |
H1C1 |
C1 |
O2 |
H1C2 |
109.5 |
120.8 |
H1C1 |
C1 |
O2 |
H1C3 |
234.7 |
240.4 |
H1C2 |
C1 |
O2 |
H1C3 |
125.2 |
119.6 |
OXT |
C |
CA |
H1 |
|
32.3 |
CA |
C |
OXT |
O |
|
177.7 |
OXT |
C |
CA |
CB |
|
268.4 |
H |
N |
CA |
H1 |
264.2 |
274.9 |
CA |
N |
H |
H2 |
119.8 |
193.7 |
H |
N |
CA |
C |
152.3 |
157.8 |
H |
N |
CA |
CB |
20.3 |
36.4 |
HA1 |
CB |
CA |
H1 |
178.9 |
177.1 |
CA |
CB |
HA1 |
OG |
126.5 |
119.6 |
CA |
CB |
HA1 |
HB2 |
243.3 |
237.1 |
HA1 |
CB |
OG |
P2 |
333.2 |
300.7 |
OG |
CB |
HA1 |
HB2 |
116.7 |
117.5 |
HB2 |
CB |
CA |
H1 |
69.4 |
56.1 |
CA |
CB |
HB2 |
OG |
233.5 |
239.5 |
CA |
CB |
HB2 |
HA1 |
116.7 |
122.6 |
HB2 |
CB |
OG |
P2 |
82.6 |
58.0 |
OG |
CB |
HB2 |
HA1 |
243.3 |
243.1 |
H3N1 |
N3 |
P2 |
O2 |
146.8 |
299.5 |
P2 |
N3 |
H3N1 |
H3N2 |
159.8 |
178.9 |
H3N2 |
N3 |
P2 |
O2 |
272.0 |
118.4 |
P2 |
N3 |
H3N2 |
H3N1 |
234.8 |
181.1 |
O2 |
C1 |
H1C1 |
H1C2 |
242.7 |
239.5 |
O2 |
C1 |
H1C1 |
H1C3 |
125.4 |
119.4 |
H1C2 |
C1 |
H1C1 |
H1C3 |
242.7 |
239.8 |
O2 |
C1 |
H1C2 |
H1C1 |
117.3 |
120.4 |
O2 |
C1 |
H1C2 |
H1C3 |
234.6 |
240.6 |
H1C1 |
C1 |
H1C2 |
H1C3 |
117.3 |
120.2 |
O2 |
C1 |
H1C3 |
H1C1 |
234.7 |
240.3 |
O2 |
C1 |
H1C3 |
H1C2 |
125.3 |
119.7 |
H1C1 |
C1 |
H1C3 |
H1C2 |
250.6 |
239.3 |