PDB Chemical Component SGN

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SGN

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.539	1.531
C1	O1	1.434	1.430
C1	O5	1.436	1.424
C1	H1	1.115	1.090
C2	C3	1.522	1.531
C2	N2	1.461	1.465
C2	H2	1.115	1.090
C3	C4	1.534	1.531
C3	O3	1.396	1.428
C3	H3	1.115	1.090
C4	C5	1.537	1.530
C4	O4	1.453	1.429
C4	H4	1.115	1.090
C5	C6	1.511	1.530
C5	O5	1.445	1.425
C5	H5	1.115	1.090
C6	O6	1.423	1.428
C6	H61	1.115	1.090
C6	H62	1.116	1.090
N2	S1	1.786	1.656
N2	HN21	1.020	0.970
O1	HO1	0.951	0.967
O3	HO3	0.951	0.966
O4	HO4	0.951	0.968
O6	S2	1.768	1.522
S1	O1S	1.428	1.421
S1	O2S	1.433	1.421
S1	O3S	1.436	1.521
O3S	HOS3	0.949	0.967
S2	O4S	1.440	1.420
S2	O5S	1.442	1.420
S2	O6S	1.444	1.522
O6S	HOS6	0.950	0.967

Bond Angles for SGN

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	114.4	109.4
C2	C1	O5	110.7	109.7
C2	C1	H1	106.6	109.4
C1	C2	C3	110.9	109.1
C1	C2	N2	109.3	109.5
C1	C2	H2	107.9	109.5
O1	C1	O5	113.5	109.4
O1	C1	H1	103.3	109.4
C1	O1	HO1	114.4	106.8
O5	C1	H1	107.7	109.5
C1	O5	C5	113.8	107.7
C3	C2	N2	107.1	109.6
C3	C2	H2	110.0	109.6
C2	C3	C4	111.8	108.6
C2	C3	O3	108.0	109.8
C2	C3	H3	108.8	109.6
N2	C2	H2	111.6	109.5
C2	N2	S1	120.8	120.0
C2	N2	HN21	108.1	120.0
C4	C3	O3	109.0	109.6
C4	C3	H3	107.7	109.6
C3	C4	C5	105.5	109.0
C3	C4	O4	108.1	109.6
C3	C4	H4	113.8	109.5
O3	C3	H3	111.5	109.6
C3	O3	HO3	108.0	106.9
C5	C4	O4	111.7	109.6
C5	C4	H4	110.2	109.5
C4	C5	C6	114.4	109.4
C4	C5	O5	109.8	109.8
C4	C5	H5	105.9	109.4
O4	C4	H4	107.7	109.5
C4	O4	HO4	108.1	106.8
C6	C5	O5	109.8	109.4
C6	C5	H5	105.9	109.4
C5	C6	O6	107.4	109.6
C5	C6	H61	113.0	109.5
C5	C6	H62	113.0	109.5
O5	C5	H5	110.9	109.4
O6	C6	H61	113.0	109.5
O6	C6	H62	113.0	109.4
C6	O6	S2	118.3	106.9
H61	C6	H62	97.5	109.4
S1	N2	HN21	108.2	120.0
N2	S1	O1S	108.7	105.8
N2	S1	O2S	109.7	105.8
N2	S1	O3S	110.8	107.4
O6	S2	O4S	105.6	105.8
O6	S2	O5S	110.7	105.8
O6	S2	O6S	110.0	107.4
O1S	S1	O2S	109.9	125.3
O1S	S1	O3S	108.7	105.7
O2S	S1	O3S	109.0	105.7
S1	O3S	HOS3	110.8	106.9
O4S	S2	O5S	110.3	125.4
O4S	S2	O6S	111.5	105.8
O5S	S2	O6S	108.8	105.7
S2	O6S	HOS6	110.0	106.8

Torsion Angles for SGN

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	O5	230.3	240.0
O1	C1	C2	H1	113.5	119.8
C2	C1	O1	HO1	179.9	180.2
O5	C1	C2	H1	243.2	239.8
C2	C1	O5	C5	303.6	292.5
C3	C2	C1	N2	242.1	240.1
C3	C2	C1	H2	120.5	119.9
C1	C2	C3	C4	306.5	306.3
C1	C2	C3	O3	186.6	186.4
C1	C2	C3	H3	65.4	66.0
N2	C2	C1	H2	238.4	239.9
C1	C2	N2	S1	111.0	120.4
C1	C2	N2	HN21	345.7	300.3
C2	C1	O1	O5	128.3	120.2
C2	C1	O1	H1	244.6	240.1
O1	C1	C2	C3	280.2	301.2
O1	C1	C2	N2	38.1	61.1
O1	C1	C2	H2	159.7	181.3
O5	C1	O1	H1	116.3	119.9
O1	C1	O5	C5	73.8	52.5
C2	C1	O5	O1	229.8	240.0
C2	C1	O5	H1	116.1	120.1
O5	C1	C2	C3	49.9	61.2
O5	C1	C2	N2	167.8	181.2
O5	C1	C2	H2	289.4	301.3
O1	C1	O5	H1	246.3	240.2
O5	C1	O1	HO1	51.6	59.9
C4	C5	O5	C1	64.1	67.6
C6	C5	O5	C1	190.7	187.7
C1	O5	C5	H5	307.4	307.5
C2	C1	H1	O1	120.9	119.8
C2	C1	H1	O5	241.2	239.7
H1	C1	C2	C3	166.7	181.4
H1	C1	C2	N2	284.6	301.3
H1	C1	C2	H2	46.2	61.5
O1	C1	H1	O5	120.3	119.9
H1	C1	O1	HO1	295.3	300.0
H1	C1	O5	C5	187.5	172.4
C3	C2	C1	O1	280.2	301.2
C3	C2	C1	O5	49.9	61.2
C3	C2	C1	H1	166.7	181.4
C1	C2	C3	N2	119.2	119.9
C1	C2	C3	H2	240.7	240.1
N2	C2	C3	H2	121.5	120.2
C3	C2	N2	S1	231.2	240.0
C3	C2	N2	HN21	106.0	59.9
C4	C3	C2	O3	120.0	119.9
C4	C3	C2	H3	241.2	240.3
C2	C3	C4	C5	58.2	53.7
C2	C3	C4	O4	177.7	173.7
C2	C3	C4	H4	297.3	293.9
O3	C3	C2	H3	121.2	120.4
C2	C3	O3	HO3	179.9	179.2
N2	C2	C1	O1	38.1	61.1
N2	C2	C1	O5	167.8	181.2
N2	C2	C1	H1	284.6	301.3
C1	C2	N2	C3	239.8	240.4
C1	C2	N2	H2	119.3	120.1
C3	C2	N2	H2	239.5	239.7
N2	C2	C3	C4	187.3	186.4
N2	C2	C3	O3	67.4	66.5
N2	C2	C3	H3	306.1	306.1
S1	N2	C2	HN21	125.3	180.1
C2	N2	S1	O1S	279.2	172.6
C2	N2	S1	O2S	159.0	307.4
C2	N2	S1	O3S	38.6	60.0
H2	C2	C1	O1	159.7	181.3
H2	C2	C1	O5	289.4	301.3
H2	C2	C1	H1	46.2	61.5
C1	C2	H2	C3	121.1	119.6
C1	C2	H2	N2	239.9	239.9
C3	C2	H2	N2	118.8	120.2
H2	C2	C3	C4	65.8	66.1
H2	C2	C3	O3	305.9	306.3
H2	C2	C3	H3	184.6	185.9
H2	C2	N2	S1	351.7	0.3
H2	C2	N2	HN21	226.5	180.2
C4	C3	C2	N2	187.3	186.4
C4	C3	C2	H2	65.8	66.1
C2	C3	C4	O3	240.6	240.0
C2	C3	C4	H3	119.5	119.7
O3	C3	C4	H3	238.8	239.7
C4	C3	O3	HO3	58.2	59.9
C5	C4	C3	O4	240.5	240.0
C5	C4	C3	H4	120.9	119.9
C3	C4	C5	C6	174.2	178.7
C3	C4	C5	O5	298.1	298.8
C3	C4	C5	H5	57.9	58.8
O4	C4	C3	H4	240.4	239.8
C3	C4	O4	HO4	180.0	180.4
O3	C3	C2	N2	67.4	66.5
O3	C3	C2	H2	305.9	306.3
C2	C3	O3	C4	121.7	119.2
C2	C3	O3	H3	240.5	239.6
C4	C3	O3	H3	118.8	120.3
O3	C3	C4	C5	177.5	173.7
O3	C3	C4	O4	297.1	293.6
O3	C3	C4	H4	56.6	53.8
H3	C3	C2	N2	306.1	306.1
H3	C3	C2	H2	184.6	185.9
C2	C3	H3	C4	238.6	240.9
C2	C3	H3	O3	119.0	120.5
C4	C3	H3	O3	240.4	239.6
H3	C3	C4	C5	298.7	294.0
H3	C3	C4	O4	58.2	53.9
H3	C3	C4	H4	177.8	174.1
H3	C3	O3	HO3	299.4	299.6
C1	O5	C5	C4	64.1	67.6
C5	C4	C3	O3	177.5	173.7
C5	C4	C3	H3	298.7	294.0
C3	C4	C5	O4	117.1	120.0
C3	C4	C5	H4	236.8	240.1
O4	C4	C5	H4	119.7	120.2
C5	C4	O4	HO4	295.5	300.1
C6	C5	C4	O5	236.1	239.9
C6	C5	C4	H5	116.2	119.8
C4	C5	C6	O6	99.7	180.3
C4	C5	C6	H61	225.0	300.4
C4	C5	C6	H62	334.4	60.3
O5	C5	C4	H5	240.2	239.9
O4	C4	C3	O3	297.1	293.6
O4	C4	C3	H3	58.2	53.9
C3	C4	O4	C5	244.5	240.4
C3	C4	O4	H4	123.3	120.2
C5	C4	O4	H4	238.8	239.8
O4	C4	C5	C6	57.1	58.7
O4	C4	C5	O5	181.0	178.8
O4	C4	C5	H5	300.8	298.9
H4	C4	C3	O3	56.6	53.8
H4	C4	C3	H3	177.8	174.1
C3	C4	H4	C5	118.2	119.6
C3	C4	H4	O4	240.2	239.7
C5	C4	H4	O4	122.0	120.2
H4	C4	C5	C6	297.4	298.5
H4	C4	C5	O5	61.3	58.6
H4	C4	C5	H5	181.1	178.7
H4	C4	O4	HO4	56.7	60.2
C1	O5	C5	C6	190.7	187.7
C6	C5	C4	O4	57.1	58.7
C6	C5	C4	H4	297.4	298.5
C4	C5	C6	O5	123.9	120.3
C4	C5	C6	H5	243.8	240.2
O5	C5	C6	H5	119.8	119.8
O6	C6	C5	H61	234.7	239.9
O6	C6	C5	H62	125.3	120.0
C5	C6	O6	S2	260.9	180.0
H61	C6	C5	H62	250.6	240.1
C5	O5	C1	H1	187.5	172.4
O5	C5	C4	O4	181.0	178.8
O5	C5	C4	H4	61.3	58.6
C4	C5	O5	C6	233.4	239.9
C4	C5	O5	H5	116.7	120.1
C6	C5	O5	H5	243.3	240.2
O5	C5	C6	O6	335.7	60.0
O5	C5	C6	H61	101.0	180.1
O5	C5	C6	H62	210.5	299.9
H5	C5	C4	O4	300.8	298.9
H5	C5	C4	H4	181.1	178.7
C4	C5	H5	C6	121.9	119.8
C4	C5	H5	O5	240.9	239.7
C6	C5	H5	O5	119.1	119.8
H5	C5	C6	O6	215.9	300.1
H5	C5	C6	H61	341.2	60.2
H5	C5	C6	H62	90.6	180.1
O6	C6	C5	O5	335.7	60.0
O6	C6	C5	H5	215.9	300.1
C5	C6	O6	H61	125.3	120.1
C5	C6	O6	H62	234.8	240.0
H61	C6	O6	H62	109.5	119.8
C6	O6	S2	O4S	274.9	202.6
C6	O6	S2	O5S	155.5	337.5
C6	O6	S2	O6S	35.3	90.0
H61	C6	C5	O5	101.0	180.1
H61	C6	C5	H5	341.2	60.2
C5	C6	H61	O6	237.8	239.9
C5	C6	H61	H62	118.9	120.0
O6	C6	H61	H62	241.1	240.1
H61	C6	O6	S2	135.6	59.9
H62	C6	C5	O5	210.5	299.9
H62	C6	C5	H5	90.6	180.1
C5	C6	H62	O6	122.1	120.1
C5	C6	H62	H61	241.1	240.0
O6	C6	H62	H61	119.0	119.9
H62	C6	O6	S2	26.2	300.0
S1	N2	C2	H2	351.7	0.3
C2	N2	S1	HN21	234.8	179.9
O1S	S1	N2	O2S	120.2	225.2
O1S	S1	N2	O3S	240.6	112.6
O2S	S1	N2	O3S	120.4	247.4
N2	S1	O3S	HOS3	180.0	180.0
HN21	N2	C2	H2	226.5	180.2
C2	N2	HN21	S1	132.4	180.1
HN21	N2	S1	O1S	44.4	352.6
HN21	N2	S1	O2S	284.3	127.5
HN21	N2	S1	O3S	163.8	240.1
HO1	O1	C1	O5	51.6	59.9
HO1	O1	C1	H1	295.3	300.0
HO3	O3	C3	H3	299.4	299.6
HO4	O4	C4	H4	56.7	60.2
S2	O6	C6	H61	135.6	59.9
S2	O6	C6	H62	26.2	300.0
O4S	S2	O6	O5S	119.4	225.2
O4S	S2	O6	O6S	239.6	112.6
O5S	S2	O6	O6S	120.2	247.4
O6	S2	O6S	HOS6	180.0	180.0
O1S	S1	N2	HN21	44.4	352.6
N2	S1	O1S	O2S	240.0	123.2
N2	S1	O1S	O3S	120.7	246.2
O2S	S1	O1S	O3S	240.7	123.0
O1S	S1	O3S	HOS3	299.4	67.3
O2S	S1	N2	HN21	284.3	127.5
N2	S1	O2S	O1S	119.4	236.8
N2	S1	O2S	O3S	238.5	113.8
O1S	S1	O2S	O3S	119.1	237.0
O2S	S1	O3S	HOS3	59.2	292.6
O3S	S1	N2	HN21	163.8	240.1
N2	S1	O3S	O1S	240.6	112.7
N2	S1	O3S	O2S	120.8	247.4
O1S	S1	O3S	O2S	240.2	134.7
O6	S2	O4S	O5S	240.4	123.2
O6	S2	O4S	O6S	119.4	246.3
O5S	S2	O4S	O6S	239.1	123.1
O4S	S2	O6S	HOS6	296.8	67.4
O6	S2	O5S	O4S	116.5	236.8
O6	S2	O5S	O6S	239.1	113.7
O4S	S2	O5S	O6S	122.6	236.9
O5S	S2	O6S	HOS6	58.6	292.6
O6	S2	O6S	O4S	243.2	112.6
O6	S2	O6S	O5S	121.4	247.4
O4S	S2	O6S	O5S	238.2	134.8