Atom Nomenclature for SG1

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for SG1

Atom Name (V3) Atom Name (V2)
S1 S1
C2 C2
C3 C3
C4 C4
C5 C5
N6 N6
C7 C7
O8 O8
C9 C9
C10 C10
C11 C11
C12 C12
N13 N13
O14 O14
O15 O15
C16 C16
N17 N17
O18 O18
O19 O19
H31 1H3
H41 1H4
H91 1H9
H92 2H9
H101 1H10
H102 2H10
H111 1H11
H112 2H11
H161 1H16
H171 1H17
H172 2H17