PDB Chemical Component SFG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SFG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.456 1.469
N HN1 1.000 1.009
N HN2 1.000 1.009
CA C 1.535 1.508
CA CB 1.533 1.530
CA HA 1.100 1.090
C O 1.247 1.208
C OXT 1.246 1.342
OXT HXT 0.951 0.966
CB CG 1.513 1.530
CB HB1 1.100 1.090
CB HB2 1.100 1.091
CG CD 1.531 1.530
CG HG1 1.100 1.090
CG HG2 1.099 1.090
CD NE 1.492 1.470
CD C5' 1.530 1.530
CD HD 1.100 1.090
NE HNE1 1.000 1.009
NE HNE2 1.000 1.008
C5' C4' 1.521 1.530
C5' H5'1 1.100 1.091
C5' H5'2 1.100 1.089
C4' O4' 1.443 1.438
C4' C3' 1.522 1.542
C4' H4' 1.100 1.091
O4' C1' 1.435 1.443
C3' O3' 1.437 1.429
C3' C2' 1.504 1.547
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.967
C2' O2' 1.426 1.429
C2' C1' 1.511 1.550
C2' H2' 1.100 1.090
O2' HO2' 0.950 0.967
C1' N9 1.470 1.465
C1' H1' 1.100 1.090
N9 C8 1.351 1.363
N9 C4 1.371 1.372
C8 N7 1.290 1.301
C8 H8 1.080 1.080
N7 C5 1.390 1.355
C5 C6 1.387 1.405
C5 C4 1.374 1.405
C6 N6 1.323 1.384
C6 N1 1.344 1.329
N6 HN61 1.000 0.970
N6 HN62 1.000 0.970
N1 C2 1.325 1.320
C2 N3 1.320 1.317
C2 H2 1.080 1.080
N3 C4 1.342 1.329

Bond Angles for SFG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N HN1 109.5 111.0
CA N HN2 109.4 111.0
N CA C 110.0 109.5
N CA CB 110.0 109.4
N CA HA 109.1 109.5
HN1 N HN2 109.4 111.1
C CA CB 110.6 109.5
C CA HA 108.6 109.5
CA C O 118.2 120.0
CA C OXT 119.0 120.0
CB CA HA 108.5 109.5
CA CB CG 113.7 109.5
CA CB HB1 108.1 109.5
CA CB HB2 108.1 109.5
O C OXT 122.7 120.0
C OXT HXT 109.5 117.0
CG CB HB1 108.1 109.5
CG CB HB2 108.1 109.5
CB CG CD 115.4 109.5
CB CG HG1 107.5 109.5
CB CG HG2 107.6 109.4
HB1 CB HB2 110.8 109.4
CD CG HG1 107.6 109.4
CD CG HG2 107.5 109.5
CG CD NE 110.7 109.5
CG CD C5' 106.2 109.5
CG CD HD 111.6 109.5
HG1 CG HG2 111.3 109.5
NE CD C5' 111.8 109.4
NE CD HD 106.1 109.5
CD NE HNE1 109.5 111.0
CD NE HNE2 109.5 111.0
C5' CD HD 110.5 109.5
CD C5' C4' 120.3 109.5
CD C5' H5'1 106.0 109.5
CD C5' H5'2 106.0 109.5
HNE1 NE HNE2 109.5 111.0
C4' C5' H5'1 106.0 109.4
C4' C5' H5'2 106.0 109.5
C5' C4' O4' 111.2 109.9
C5' C4' C3' 110.5 109.9
C5' C4' H4' 107.1 109.8
H5'1 C5' H5'2 112.7 109.5
O4' C4' C3' 107.8 107.3
O4' C4' H4' 109.7 109.9
C4' O4' C1' 108.6 107.0
C3' C4' H4' 110.5 110.0
C4' C3' O3' 109.7 110.5
C4' C3' C2' 105.0 104.2
C4' C3' H3' 112.4 110.5
O4' C1' C2' 106.4 103.5
O4' C1' N9 111.5 110.6
O4' C1' H1' 110.9 110.6
O3' C3' C2' 109.9 110.5
O3' C3' H3' 107.7 110.5
C3' O3' HO3' 109.5 114.0
C2' C3' H3' 112.2 110.6
C3' C2' O2' 110.6 110.9
C3' C2' C1' 104.4 102.1
C3' C2' H2' 112.7 110.9
O2' C2' C1' 111.1 110.9
O2' C2' H2' 106.0 110.8
C2' O2' HO2' 109.5 114.0
C1' C2' H2' 112.1 110.9
C2' C1' N9 111.5 110.6
C2' C1' H1' 110.9 110.6
N9 C1' H1' 105.7 110.7
C1' N9 C8 129.7 126.3
C1' N9 C4 126.3 126.3
C8 N9 C4 103.8 107.4
N9 C8 N7 117.0 110.0
N9 C8 H8 121.5 125.0
N9 C4 C5 106.5 106.0
N9 C4 N3 126.3 134.9
N7 C8 H8 121.5 125.0
C8 N7 C5 102.1 109.5
N7 C5 C6 132.2 134.7
N7 C5 C4 110.5 107.1
C6 C5 C4 117.0 118.2
C5 C6 N6 122.8 120.8
C5 C6 N1 117.5 118.5
C5 C4 N3 127.0 119.1
N6 C6 N1 119.7 120.7
C6 N6 HN61 109.5 120.0
C6 N6 HN62 109.5 120.0
C6 N1 C2 119.1 121.2
HN61 N6 HN62 109.5 120.0
N1 C2 N3 129.2 122.4
N1 C2 H2 115.4 118.8
N3 C2 H2 115.4 118.7
C2 N3 C4 110.2 120.6

Torsion Angles for SFG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
HN1 N CA HN2 240.0 235.9
C CA N CB 122.0 120.0
C CA N HA 241.0 240.0
N CA C O 355.8 340.0
N CA C OXT 175.4 160.0
CB CA N HA 119.0 120.0
N CA CB CG 198.9 295.0
N CA CB HB1 318.9 55.0
N CA CB HB2 78.9 175.0
CA N HN1 HN2 120.0 124.0
HN1 N CA C 180.0 59.9
HN1 N CA CB 58.0 300.0
HN1 N CA HA 299.0 180.0
CA N HN2 HN1 240.0 236.0
HN2 N CA C 300.0 184.0
HN2 N CA CB 178.0 64.0
HN2 N CA HA 59.0 304.0
C CA N HN1 180.0 59.9
C CA N HN2 300.0 184.0
N CA C CB 238.3 240.0
N CA C HA 119.3 120.1
CB CA C HA 241.1 240.0
C CA CB CG 77.2 175.0
C CA CB HB1 197.2 295.0
C CA CB HB2 317.2 55.0
O C CA OXT 180.4 180.0
CA C OXT HXT 180.4 180.0
CB CA N HN1 58.0 300.0
CB CA N HN2 178.0 64.0
N CA CB C 121.7 120.0
N CA CB HA 240.7 240.0
C CA CB HA 119.0 120.0
CB CA C O 117.5 100.0
CB CA C OXT 297.1 280.0
CG CB CA HB1 240.0 239.9
CG CB CA HB2 120.0 120.0
CA CB CG CD 198.4 180.0
CA CB CG HG1 318.4 300.0
CA CB CG HG2 78.4 60.0
HB1 CB CA HB2 240.0 240.1
HA CA N HN1 299.0 180.0
HA CA N HN2 59.0 304.0
N CA HA C 240.1 240.0
N CA HA CB 119.9 120.0
C CA HA CB 239.8 240.0
HA CA C O 236.5 220.0
HA CA C OXT 56.1 40.0
HA CA CB CG 318.2 55.0
HA CA CB HB1 78.2 175.1
HA CA CB HB2 198.2 295.0
O C CA CB 117.5 100.0
O C CA HA 236.5 220.0
CA C O OXT 179.6 180.0
O C OXT HXT 0.0 0.0
OXT C CA CB 297.1 280.0
OXT C CA HA 56.1 40.0
CA C OXT O 180.4 180.0
CG CB CA HA 318.2 55.0
CA CB CG HB1 120.0 120.1
CA CB CG HB2 240.0 240.0
HB1 CB CG HB2 120.0 119.9
CD CG CB HG1 240.0 240.0
CD CG CB HG2 120.0 120.0
CB CG CD NE 279.6 295.0
CB CG CD C5' 158.1 175.0
CB CG CD HD 37.5 55.0
HG1 CG CB HG2 240.0 240.0
HB1 CB CA HA 78.2 175.1
CA CB HB1 CG 236.5 240.0
CA CB HB1 HB2 118.2 120.0
CG CB HB1 HB2 241.7 240.1
HB1 CB CG CD 78.4 59.9
HB1 CB CG HG1 198.4 179.9
HB1 CB CG HG2 318.4 300.0
HB2 CB CA HA 198.2 295.0
CA CB HB2 CG 123.5 120.0
CA CB HB2 HB1 241.8 240.0
CG CB HB2 HB1 118.3 120.0
HB2 CB CG CD 318.4 300.0
HB2 CB CG HG1 78.4 60.0
HB2 CB CG HG2 198.4 180.0
CD CG CB HB1 78.4 59.9
CD CG CB HB2 318.4 300.0
CB CG CD HG1 120.0 120.0
CB CG CD HG2 240.0 240.0
HG1 CG CD HG2 120.0 120.0
NE CD CG C5' 121.5 120.0
NE CD CG HD 242.1 240.0
CG CD NE HNE1 180.0 176.0
CG CD NE HNE2 300.0 300.0
C5' CD CG HD 120.5 120.0
CG CD C5' C4' 166.4 185.0
CG CD C5' H5'1 286.4 305.0
CG CD C5' H5'2 46.4 65.0
HG1 CG CB HB1 198.4 179.9
HG1 CG CB HB2 78.4 60.0
CB CG HG1 CD 235.2 240.0
CB CG HG1 HG2 117.6 120.0
CD CG HG1 HG2 242.4 240.0
HG1 CG CD NE 159.6 175.0
HG1 CG CD C5' 38.1 55.0
HG1 CG CD HD 277.6 295.0
HG2 CG CB HB1 318.4 300.0
HG2 CG CB HB2 198.4 180.0
CB CG HG2 CD 124.9 120.0
CB CG HG2 HG1 242.4 240.0
CD CG HG2 HG1 117.6 120.0
HG2 CG CD NE 39.6 55.0
HG2 CG CD C5' 278.1 295.0
HG2 CG CD HD 157.5 174.9
NE CD CG HG1 159.6 175.0
NE CD CG HG2 39.6 55.0
CG CD NE C5' 241.8 240.0
CG CD NE HD 121.3 120.0
C5' CD NE HD 239.5 240.0
NE CD C5' C4' 45.6 65.0
NE CD C5' H5'1 165.6 185.0
NE CD C5' H5'2 285.6 305.0
HNE1 NE CD HNE2 240.0 236.0
C5' CD CG HG1 38.1 55.0
C5' CD CG HG2 278.1 295.0
CG CD C5' NE 120.8 120.0
CG CD C5' HD 238.7 239.9
NE CD C5' HD 117.9 120.0
C5' CD NE HNE1 298.2 296.0
C5' CD NE HNE2 58.2 60.0
C4' C5' CD H5'1 240.0 240.0
C4' C5' CD H5'2 120.0 120.0
CD C5' C4' O4' 42.1 66.4
CD C5' C4' C3' 161.8 184.3
CD C5' C4' H4' 282.2 305.4
H5'1 C5' CD H5'2 240.0 240.0
HD CD CG HG1 277.6 295.0
HD CD CG HG2 157.5 174.9
CG CD HD NE 239.3 240.0
CG CD HD C5' 118.0 120.1
NE CD HD C5' 238.7 240.1
HD CD NE HNE1 58.7 56.0
HD CD NE HNE2 178.7 180.0
HD CD C5' C4' 287.7 305.1
HD CD C5' H5'1 47.6 65.0
HD CD C5' H5'2 167.7 185.0
HNE1 NE CD C5' 298.2 296.0
HNE1 NE CD HD 58.7 56.0
CD NE HNE1 HNE2 120.0 124.0
HNE2 NE CD C5' 58.2 60.0
HNE2 NE CD HD 178.7 180.0
CD NE HNE2 HNE1 240.0 236.0
C4' C5' CD HD 287.7 305.1
CD C5' C4' H5'1 120.0 120.0
CD C5' C4' H5'2 240.0 239.9
H5'1 C5' C4' H5'2 120.0 120.0
O4' C4' C5' C3' 240.3 242.1
O4' C4' C5' H4' 119.9 121.0
C5' C4' O4' C1' 131.9 146.0
C3' C4' C5' H4' 239.6 238.9
C5' C4' C3' O3' 127.8 119.9
C5' C4' C3' C2' 245.8 238.5
C5' C4' C3' H3' 8.0 357.3
H5'1 C5' CD HD 47.6 65.0
CD C5' H5'1 C4' 231.1 240.0
CD C5' H5'1 H5'2 115.5 120.0
C4' C5' H5'1 H5'2 244.5 240.0
H5'1 C5' C4' O4' 282.1 306.4
H5'1 C5' C4' C3' 41.8 64.3
H5'1 C5' C4' H4' 162.2 185.4
H5'2 C5' CD HD 167.7 185.0
CD C5' H5'2 C4' 128.9 120.1
CD C5' H5'2 H5'1 244.4 240.0
C4' C5' H5'2 H5'1 115.5 119.9
H5'2 C5' C4' O4' 162.1 186.4
H5'2 C5' C4' C3' 281.8 304.3
H5'2 C5' C4' H4' 42.2 65.5
O4' C4' C5' H5'1 282.1 306.4
O4' C4' C5' H5'2 162.1 186.4
C5' C4' O4' C3' 121.3 119.5
C5' C4' O4' H4' 241.7 239.0
C3' C4' O4' H4' 120.4 119.6
O4' C4' C3' O3' 249.5 239.3
O4' C4' C3' C2' 7.5 358.0
O4' C4' C3' H3' 129.8 116.8
C4' O4' C1' C2' 335.4 320.0
C4' O4' C1' N9 213.6 201.5
C4' O4' C1' H1' 96.1 78.4
C3' C4' C5' H5'1 41.8 64.3
C3' C4' C5' H5'2 281.8 304.3
C5' C4' C3' O4' 238.3 240.5
C5' C4' C3' H4' 118.3 121.0
O4' C4' C3' H4' 240.1 240.5
C3' C4' O4' C1' 10.6 26.5
O3' C3' C4' C2' 242.0 241.3
O3' C3' C4' H3' 119.7 122.5
C4' C3' O3' HO3' 180.0 180.0
C2' C3' C4' H3' 237.8 241.2
C4' C3' C2' O2' 218.8 220.9
C4' C3' C2' C1' 338.4 339.1
C4' C3' C2' H2' 100.3 97.4
H4' C4' C5' H5'1 162.2 185.4
H4' C4' C5' H5'2 42.2 65.5
C5' C4' H4' O4' 120.8 121.0
C5' C4' H4' C3' 239.6 238.9
O4' C4' H4' C3' 118.8 117.9
H4' C4' O4' C1' 250.2 266.9
H4' C4' C3' O3' 9.4 358.8
H4' C4' C3' C2' 127.5 117.5
H4' C4' C3' H3' 249.7 236.3
C1' O4' C4' C3' 10.6 26.5
C1' O4' C4' H4' 250.2 266.9
C3' C2' C1' O4' 28.7 37.0
O2' C2' C1' O4' 147.9 155.2
O4' C1' C2' H2' 266.4 278.8
C2' C1' O4' N9 121.8 118.5
C2' C1' O4' H1' 239.3 241.5
N9 C1' O4' H1' 117.5 123.1
O4' C1' N9 C8 84.8 23.5
O4' C1' N9 C4 260.0 203.3
O3' C3' C4' H4' 9.4 358.8
C4' C3' O3' C2' 114.9 114.7
C4' C3' O3' H3' 237.4 237.5
C2' C3' O3' H3' 122.5 122.7
O3' C3' C2' O2' 336.6 339.6
O3' C3' C2' C1' 96.2 97.8
O3' C3' C2' H2' 218.1 216.0
C2' C3' C4' H4' 127.5 117.5
C4' C3' C2' O3' 242.1 241.3
C4' C3' C2' H3' 122.4 118.7
O4' C1' C2' C3' 28.7 37.0
O3' C3' C2' H3' 240.2 237.3
C2' C3' O3' HO3' 65.1 65.3
O2' C2' C3' C1' 240.4 241.8
O2' C2' C3' H2' 118.5 123.5
C3' C2' O2' HO2' 180.0 298.5
C1' C2' C3' H2' 238.1 241.8
C3' C2' C1' N9 150.5 155.5
C3' C2' C1' H1' 268.0 278.5
H3' C3' C4' H4' 249.7 236.3
C4' C3' H3' O3' 120.9 122.5
C4' C3' H3' C2' 242.0 245.2
O3' C3' H3' C2' 121.1 122.7
H3' C3' O3' HO3' 302.6 302.5
H3' C3' C2' O2' 96.4 102.2
H3' C3' C2' C1' 216.0 220.4
H3' C3' C2' H2' 337.9 338.7
HO3' O3' C3' C2' 65.1 65.3
HO3' O3' C3' H3' 302.6 302.5
O4' C1' C2' O2' 147.9 155.2
O2' C2' C3' H3' 96.4 102.2
C3' C2' O2' C1' 115.4 112.7
C3' C2' O2' H2' 237.5 236.4
C1' C2' O2' H2' 122.1 123.6
O2' C2' C1' N9 269.8 273.7
O2' C2' C1' H1' 27.3 36.7
O4' C1' C2' N9 238.2 241.5
O4' C1' C2' H1' 120.6 118.5
C1' C2' C3' H3' 216.0 220.4
C3' C2' C1' O2' 240.8 241.8
C3' C2' C1' H2' 122.3 118.2
O2' C2' C1' H2' 241.5 236.4
C1' C2' O2' HO2' 64.6 185.8
N9 C1' C2' H1' 242.5 237.0
C2' C1' N9 C8 326.0 269.4
C2' C1' N9 C4 141.2 89.2
H2' C2' C3' H3' 337.9 338.7
C3' C2' H2' O2' 121.1 123.6
C3' C2' H2' C1' 242.6 247.2
O2' C2' H2' C1' 121.5 123.6
H2' C2' O2' HO2' 302.5 62.1
H2' C2' C1' N9 28.3 37.3
H2' C2' C1' H1' 145.8 160.3
HO2' O2' C2' C1' 64.6 185.8
HO2' O2' C2' H2' 302.5 62.1
O4' C1' N9 C2' 118.8 114.1
O4' C1' N9 H1' 239.4 237.0
N9 C1' C2' H2' 28.3 37.3
C2' C1' N9 H1' 120.6 122.9
C8 N9 C1' C4 184.8 180.2
C1' N9 C8 N7 175.6 180.1
C1' N9 C8 H8 355.6 0.1
C1' N9 C4 C5 184.3 179.8
C1' N9 C4 N3 359.2 0.8
O4' C1' H1' C2' 242.0 245.9
O4' C1' H1' N9 121.0 123.0
H1' C1' C2' H2' 145.8 160.3
C2' C1' H1' N9 239.0 237.1
H1' C1' N9 C8 205.3 146.5
H1' C1' N9 C4 20.6 326.3
C8 N9 C1' H1' 205.3 146.5
C1' N9 C8 C4 176.0 179.8
C8 N9 C4 C5 0.5 359.6
C8 N9 C4 N3 175.4 180.6
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 0.2 360.0
C4 N9 C1' H1' 20.6 326.3
C1' N9 C4 C8 183.8 180.2
C4 N9 C8 N7 359.6 0.2
C4 N9 C8 H8 179.5 180.2
N7 C5 C4 N9 359.6 0.4
C6 C5 C4 N9 174.8 180.2
C5 C4 N9 N3 185.1 179.0
C2 N3 C4 N9 186.0 179.6
N7 C8 N9 C4 359.6 0.2
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 185.9 180.0
C8 N7 C5 C4 0.2 359.8
H8 C8 N9 C4 179.5 180.2
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 180.2 180.0
N9 C4 C5 N7 359.6 0.4
C5 N7 C8 H8 180.2 180.0
C6 C5 N7 C4 185.7 180.3
N7 C5 C6 N6 354.8 360.0
N7 C5 C6 N1 174.1 180.0
N7 C5 C4 N3 184.7 179.6
N9 C4 C5 C6 174.8 180.2
N7 C5 C6 C4 174.0 179.7
C6 C5 C4 N3 360.0 359.4
N6 C6 C5 N1 180.7 180.0
C5 C6 N6 HN61 179.3 0.0
C5 C6 N6 HN62 299.3 180.0
C5 C6 N1 C2 359.9 0.0
N9 C4 C5 N3 174.8 180.8
N7 C5 C4 C6 184.8 180.2
C4 C5 C6 N6 180.8 180.3
C4 C5 C6 N1 0.2 0.3
C2 N3 C4 C5 359.9 0.6
N6 C6 C5 C4 180.8 180.3
C5 C6 N6 N1 179.3 180.0
N6 C6 N1 C2 179.3 180.0
HN61 N6 C6 HN62 240.0 180.0
N1 C6 C5 C4 0.2 0.3
C5 C6 N1 N6 180.7 180.0
N1 C6 N6 HN61 0.0 180.0
N1 C6 N6 HN62 120.0 360.0
C6 N1 C2 N3 359.9 360.0
C6 N1 C2 H2 179.9 180.0
HN61 N6 C6 N1 0.0 180.0
C6 N6 HN61 HN62 120.0 180.0
HN62 N6 C6 N1 120.0 360.0
C6 N6 HN62 HN61 240.0 180.0
N3 C2 N1 H2 180.0 180.0
N1 C2 N3 C4 0.2 359.7
N9 C4 N3 C2 186.0 179.6
C5 C4 N3 C2 359.9 0.6
N1 C2 N3 H2 180.0 180.0
N1 C2 H2 N3 180.0 180.0
H2 C2 N3 C4 180.2 179.6
N9 C4 N3 C5 186.1 178.9
C4 N3 C2 H2 180.2 179.6