Atom Nomenclature for SF8

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for SF8

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
N6 N6
C7 C7
C8 C8
C9 C9
C10 C10
N11 N11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
O17 O17
O18 O18
O19 O19
C20 C20
O21 O21
O22 O22
O23 O23
C24 C24
O25 O25
O26 O26
O27 O27
C28 C28
O29 O29
O30 O30
O31 O31
O32 O32
O33 O33
H2 H2
H2A H2A
H4 H4
H4A H4A
HN6 HN6
H7 H7
H8 H8
H8A H8A
H9 H9
H9A H9A
H10 H10
H10A H10A
HN11 HN11
H13 H13
H13A H13A
H15 H15
H15A H15A
HO18 HO18
HO19 HO19
HO22 HO22
HO25 HO25
HO29 HO29
HO31 HO31
HO33 HO33