PDB Chemical Component SEE
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SEE
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.460 |
1.469 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| CA |
CB |
1.510 |
1.530 |
| CA |
C |
1.532 |
1.507 |
| CA |
HA |
1.100 |
1.091 |
| CB |
OG |
1.398 |
1.429 |
| CB |
HB2 |
1.100 |
1.090 |
| CB |
HB3 |
1.100 |
1.090 |
| OG |
B |
1.496 |
1.367 |
| B |
O1B |
1.417 |
1.366 |
| B |
O2B |
1.426 |
1.367 |
| B |
O3B |
1.422 |
1.367 |
| C |
O |
1.196 |
1.208 |
| C |
OXT |
1.430 |
1.342 |
| O1B |
H6 |
0.950 |
0.967 |
| O2B |
H7 |
0.950 |
0.966 |
| O3B |
H8 |
0.950 |
0.967 |
| OXT |
HXT |
0.950 |
0.966 |
Bond Angles for SEE
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.4 |
111.0 |
| N |
CA |
CB |
108.0 |
109.5 |
| N |
CA |
C |
113.2 |
109.5 |
| N |
CA |
HA |
107.7 |
109.5 |
| H |
N |
H2 |
109.5 |
111.0 |
| CB |
CA |
C |
108.8 |
109.5 |
| CB |
CA |
HA |
112.3 |
109.4 |
| CA |
CB |
OG |
115.8 |
109.5 |
| CA |
CB |
HB2 |
107.4 |
109.5 |
| CA |
CB |
HB3 |
105.9 |
109.5 |
| C |
CA |
HA |
107.0 |
109.5 |
| CA |
C |
O |
119.8 |
120.0 |
| CA |
C |
OXT |
120.1 |
120.0 |
| OG |
CB |
HB2 |
107.4 |
109.4 |
| OG |
CB |
HB3 |
106.0 |
109.5 |
| CB |
OG |
B |
119.6 |
114.0 |
| HB2 |
CB |
HB3 |
114.6 |
109.4 |
| OG |
B |
O1B |
111.3 |
109.5 |
| OG |
B |
O2B |
108.4 |
109.4 |
| OG |
B |
O3B |
111.0 |
109.5 |
| O1B |
B |
O2B |
108.5 |
109.5 |
| O1B |
B |
O3B |
107.1 |
109.5 |
| B |
O1B |
H6 |
109.5 |
114.0 |
| O2B |
B |
O3B |
110.5 |
109.5 |
| B |
O2B |
H7 |
109.5 |
114.1 |
| B |
O3B |
H8 |
109.5 |
114.0 |
| O |
C |
OXT |
120.1 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.1 |
Torsion Angles for SEE
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
240.0 |
236.1 |
| CB |
CA |
N |
C |
239.5 |
239.9 |
| CB |
CA |
N |
HA |
121.5 |
120.0 |
| N |
CA |
CB |
OG |
279.0 |
295.0 |
| N |
CA |
CB |
HB2 |
38.9 |
55.0 |
| N |
CA |
CB |
HB3 |
161.8 |
175.0 |
| C |
CA |
N |
HA |
241.9 |
240.0 |
| N |
CA |
C |
O |
171.1 |
340.0 |
| N |
CA |
C |
OXT |
351.1 |
160.0 |
| CA |
N |
H |
H2 |
120.0 |
123.9 |
| H |
N |
CA |
CB |
164.9 |
300.0 |
| H |
N |
CA |
C |
285.4 |
60.0 |
| H |
N |
CA |
HA |
43.5 |
180.0 |
| CA |
N |
H2 |
H |
240.0 |
236.1 |
| H2 |
N |
CA |
CB |
284.9 |
63.9 |
| H2 |
N |
CA |
C |
45.4 |
183.9 |
| H2 |
N |
CA |
HA |
163.5 |
303.9 |
| CB |
CA |
N |
H |
164.9 |
300.0 |
| CB |
CA |
N |
H2 |
284.9 |
63.9 |
| N |
CA |
CB |
C |
123.2 |
120.0 |
| N |
CA |
CB |
HA |
241.4 |
240.0 |
| C |
CA |
CB |
HA |
118.2 |
120.0 |
| CB |
CA |
C |
O |
291.2 |
100.0 |
| CB |
CA |
C |
OXT |
111.1 |
280.0 |
| OG |
CB |
CA |
HB2 |
240.0 |
240.0 |
| OG |
CB |
CA |
HB3 |
117.1 |
120.1 |
| CA |
CB |
OG |
B |
74.2 |
180.0 |
| HB2 |
CB |
CA |
HB3 |
237.1 |
240.0 |
| C |
CA |
N |
H |
285.4 |
60.0 |
| C |
CA |
N |
H2 |
45.4 |
183.9 |
| N |
CA |
C |
CB |
240.0 |
240.0 |
| N |
CA |
C |
HA |
118.5 |
120.0 |
| CB |
CA |
C |
HA |
238.5 |
240.0 |
| C |
CA |
CB |
OG |
155.7 |
175.0 |
| C |
CA |
CB |
HB2 |
275.7 |
295.0 |
| C |
CA |
CB |
HB3 |
38.6 |
55.0 |
| O |
C |
CA |
OXT |
180.0 |
180.0 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| HA |
CA |
N |
H |
43.5 |
180.0 |
| HA |
CA |
N |
H2 |
163.5 |
303.9 |
| N |
CA |
HA |
CB |
118.7 |
120.0 |
| N |
CA |
HA |
C |
238.0 |
240.0 |
| CB |
CA |
HA |
C |
119.2 |
120.0 |
| HA |
CA |
CB |
OG |
37.6 |
55.0 |
| HA |
CA |
CB |
HB2 |
157.5 |
175.0 |
| HA |
CA |
CB |
HB3 |
280.4 |
295.0 |
| HA |
CA |
C |
O |
52.6 |
220.0 |
| HA |
CA |
C |
OXT |
232.6 |
40.0 |
| OG |
CB |
CA |
C |
155.7 |
175.0 |
| OG |
CB |
CA |
HA |
37.6 |
55.0 |
| CA |
CB |
OG |
HB2 |
120.0 |
120.0 |
| CA |
CB |
OG |
HB3 |
242.9 |
240.0 |
| HB2 |
CB |
OG |
HB3 |
122.9 |
119.9 |
| CB |
OG |
B |
O1B |
267.0 |
60.0 |
| CB |
OG |
B |
O2B |
147.7 |
180.0 |
| CB |
OG |
B |
O3B |
26.1 |
300.0 |
| HB2 |
CB |
CA |
C |
275.7 |
295.0 |
| HB2 |
CB |
CA |
HA |
157.5 |
175.0 |
| CA |
CB |
HB2 |
OG |
234.8 |
240.0 |
| CA |
CB |
HB2 |
HB3 |
117.4 |
120.0 |
| OG |
CB |
HB2 |
HB3 |
242.6 |
240.0 |
| HB2 |
CB |
OG |
B |
314.2 |
60.0 |
| HB3 |
CB |
CA |
C |
38.6 |
55.0 |
| HB3 |
CB |
CA |
HA |
280.4 |
295.0 |
| CA |
CB |
HB3 |
OG |
123.6 |
120.1 |
| CA |
CB |
HB3 |
HB2 |
241.8 |
240.0 |
| OG |
CB |
HB3 |
HB2 |
118.2 |
119.9 |
| HB3 |
CB |
OG |
B |
191.3 |
300.1 |
| B |
OG |
CB |
HB2 |
314.2 |
60.0 |
| B |
OG |
CB |
HB3 |
191.3 |
300.1 |
| O1B |
B |
OG |
O2B |
119.3 |
240.0 |
| O1B |
B |
OG |
O3B |
240.9 |
120.0 |
| OG |
B |
O1B |
H6 |
323.9 |
300.0 |
| O2B |
B |
OG |
O3B |
121.6 |
240.0 |
| OG |
B |
O2B |
H7 |
219.1 |
60.0 |
| OG |
B |
O3B |
H8 |
161.3 |
180.0 |
| OG |
B |
O1B |
O2B |
240.8 |
120.0 |
| OG |
B |
O1B |
O3B |
121.5 |
240.0 |
| O2B |
B |
O1B |
O3B |
240.7 |
120.0 |
| O1B |
B |
O2B |
H7 |
98.1 |
180.0 |
| O1B |
B |
O3B |
H8 |
283.0 |
60.0 |
| OG |
B |
O2B |
O1B |
121.0 |
240.0 |
| OG |
B |
O2B |
O3B |
238.1 |
120.0 |
| O1B |
B |
O2B |
O3B |
117.1 |
240.0 |
| O2B |
B |
O1B |
H6 |
83.2 |
180.0 |
| O2B |
B |
O3B |
H8 |
41.0 |
300.0 |
| OG |
B |
O3B |
O1B |
238.4 |
120.0 |
| OG |
B |
O3B |
O2B |
120.3 |
240.1 |
| O1B |
B |
O3B |
O2B |
242.0 |
120.0 |
| O3B |
B |
O1B |
H6 |
202.5 |
60.0 |
| O3B |
B |
O2B |
H7 |
341.0 |
300.0 |
| O |
C |
CA |
HA |
52.6 |
220.0 |
| CA |
C |
O |
OXT |
180.0 |
180.0 |
| O |
C |
OXT |
HXT |
0.0 |
360.0 |
| OXT |
C |
CA |
HA |
232.6 |
40.0 |
| CA |
C |
OXT |
O |
180.0 |
180.0 |
| H6 |
O1B |
B |
O2B |
83.2 |
180.0 |
| H6 |
O1B |
B |
O3B |
202.5 |
60.0 |
| H7 |
O2B |
B |
O3B |
341.0 |
300.0 |