PDB Chemical Component SDH

Ideal Model

Chemical Description

Name (5S)-7-amino-1-[2-deoxy-5-O-(trihydroxy-lambda~5~-phosphanyl)-beta-D-erythro-pentofuranosyl]-1,3,6,8-tetraazaspiro[4.4]non-7-ene-2,4,9-trione
Formula C10 H16 N5 O9 P
Formal charge 0
Molecular weight 381.236 g/mol
Component type DNA LINKING
Nonstandard Parent Id DG

Chemical features

Atom count 41
Chiral atom count 4
Chiral atoms C4 C4' C1' C3'
Observed leaving atoms H14 OP3 H16
Bond count 43
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) (5S)-7-amino-1-[2-deoxy-5-O-(trihydroxy-lambda~5~-phosphanyl)-beta-D-erythro-pentofuranosyl]-1,3,6,8-tetraazaspiro[4.4]non-7-ene-2,4,9-trione
Systematic name (OpenEye OEToolkits) (5S)-7-azanyl-1-[(2R,4S,5R)-4-oxidanyl-5-[[tris(oxidanyl)-$l^{5}-phosphanyl]oxymethyl]oxolan-2-yl]-1,3,6,8-tetrazaspiro[4.4]non-7-ene-2,4,9-trione

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)[C@@]2(N1)N([C@H]3C[C@H](O)[C@@H](CO[PH](O)(O)O)O3)C(=O)NC2=O
SMILES (CACTVS) NC1=NC(=O)[C]2(N1)N([CH]3C[CH](O)[CH](CO[PH](O)(O)O)O3)C(=O)NC2=O
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1N2C(=O)NC(=O)[C@@]23C(=O)N=C(N3)N)COP(O)(O)O)O
InChI descriptor InChI=1S/C10H16N5O9P/c11-8-12-6(17)10(14-8)7(18)13-9(19)15(10)5-1-3(16)4(24-5)2-23-25(20,21)22/h3-5,16,20-22,25H,1-2H2,(H,13,18,19)(H3,11,12,14,17)/t3-,4+,5+,10+/m0/s1
InChIKey descriptor BTPRAWLYZNCXOI-XPCBYELVSA-N

Status Information

Last modified 2014-03-28
Created 2014-02-28
Release status REL
Model PDB code 4PPX
Processing site RCSB