PDB Chemical Component SDG

Ideal Model

Chemical Description

Name 2-amino-9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-9H-purine-6-selenol
Formula C10 H14 N5 O6 P Se
Formal charge 0
Molecular weight 410.182 g/mol
Component type DNA LINKING
Nonstandard Parent Id DG

Chemical features

Atom count 37
Chiral atom count 3
Chiral atoms C4' C1' C3'
Observed leaving atoms O3P HO3'
Bond count 39
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 2-amino-9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-9H-purine-6-selenol
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-(2-amino-6-selanyl-purin-9-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) Nc1nc([SeH])c2ncn([C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3)c2n1
SMILES (CACTVS) Nc1nc([SeH])c2ncn([CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3)c2n1
Stereo SMILES (OpenEye) c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)nc(nc2[SeH])N
InChI descriptor InChI=1S/C10H14N5O6PSe/c11-10-13-8-7(9(23)14-10)12-3-15(8)6-1-4(16)5(21-6)2-20-22(17,18)19/h3-6,16H,1-2H2,(H2,17,18,19)(H3,11,13,14,23)/t4-,5+,6+/m0/s1
InChIKey descriptor RNSTWFSCXYEWJZ-KVQBGUIXSA-N

Status Information

Last modified 2011-06-04
Created 2007-12-07
Release status REL
Model PDB code 2R7Y
Processing site RCSB