PDB Chemical Component SDA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SDA
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| S1 |
N13 |
1.486 |
1.656 |
| S1 |
O12 |
1.463 |
1.421 |
| S1 |
O11 |
1.458 |
1.421 |
| S1 |
C2 |
1.777 |
1.762 |
| N13 |
H131 |
1.000 |
0.970 |
| N13 |
H132 |
1.000 |
0.970 |
| C2 |
C7 |
1.396 |
1.383 |
| C2 |
C3 |
1.414 |
1.383 |
| C7 |
C6 |
1.389 |
1.382 |
| C7 |
H7 |
1.081 |
1.081 |
| C6 |
CL8 |
1.752 |
1.737 |
| C6 |
C5 |
1.399 |
1.390 |
| C5 |
N10 |
1.411 |
1.397 |
| C5 |
C4 |
1.379 |
1.390 |
| N10 |
H101 |
1.000 |
0.970 |
| N10 |
H102 |
1.000 |
0.970 |
| C4 |
CL9 |
1.724 |
1.737 |
| C4 |
C3 |
1.395 |
1.381 |
| C3 |
H3 |
1.080 |
1.080 |
Bond Angles for SDA
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N13 |
S1 |
O12 |
110.5 |
105.8 |
| N13 |
S1 |
O11 |
111.3 |
105.7 |
| N13 |
S1 |
C2 |
106.0 |
107.4 |
| S1 |
N13 |
H131 |
109.4 |
120.0 |
| S1 |
N13 |
H132 |
109.5 |
120.0 |
| O12 |
S1 |
O11 |
116.3 |
125.4 |
| O12 |
S1 |
C2 |
103.8 |
105.8 |
| O11 |
S1 |
C2 |
108.2 |
105.8 |
| S1 |
C2 |
C7 |
123.6 |
119.9 |
| S1 |
C2 |
C3 |
118.2 |
119.9 |
| H131 |
N13 |
H132 |
109.5 |
120.0 |
| C7 |
C2 |
C3 |
118.2 |
120.1 |
| C2 |
C7 |
C6 |
121.8 |
120.1 |
| C2 |
C7 |
H7 |
119.1 |
119.9 |
| C2 |
C3 |
C4 |
119.4 |
120.1 |
| C2 |
C3 |
H3 |
120.3 |
119.9 |
| C6 |
C7 |
H7 |
119.1 |
119.9 |
| C7 |
C6 |
CL8 |
125.4 |
120.0 |
| C7 |
C6 |
C5 |
119.6 |
119.9 |
| CL8 |
C6 |
C5 |
115.0 |
120.0 |
| C6 |
C5 |
N10 |
119.7 |
120.1 |
| C6 |
C5 |
C4 |
119.2 |
119.8 |
| N10 |
C5 |
C4 |
121.1 |
120.1 |
| C5 |
N10 |
H101 |
109.5 |
120.0 |
| C5 |
N10 |
H102 |
109.5 |
120.0 |
| C5 |
C4 |
CL9 |
117.5 |
120.0 |
| C5 |
C4 |
C3 |
121.8 |
120.0 |
| H101 |
N10 |
H102 |
109.5 |
120.0 |
| CL9 |
C4 |
C3 |
120.7 |
120.0 |
| C4 |
C3 |
H3 |
120.3 |
120.0 |
Torsion Angles for SDA
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O12 |
S1 |
N13 |
O11 |
130.8 |
225.2 |
| O12 |
S1 |
N13 |
C2 |
248.2 |
112.6 |
| O11 |
S1 |
N13 |
C2 |
117.4 |
247.4 |
| N13 |
S1 |
C2 |
C7 |
306.0 |
270.0 |
| N13 |
S1 |
C2 |
C3 |
125.9 |
90.0 |
| H131 |
N13 |
S1 |
H132 |
120.0 |
179.9 |
| N13 |
S1 |
O12 |
O11 |
231.9 |
123.1 |
| N13 |
S1 |
O12 |
C2 |
113.2 |
246.3 |
| O12 |
S1 |
N13 |
H131 |
336.0 |
112.5 |
| O12 |
S1 |
N13 |
H132 |
216.0 |
292.6 |
| O11 |
S1 |
O12 |
C2 |
241.3 |
123.2 |
| O12 |
S1 |
C2 |
C7 |
62.4 |
157.4 |
| O12 |
S1 |
C2 |
C3 |
242.3 |
337.4 |
| N13 |
S1 |
O11 |
O12 |
127.7 |
236.9 |
| N13 |
S1 |
O11 |
C2 |
244.0 |
113.7 |
| O11 |
S1 |
N13 |
H131 |
205.2 |
247.3 |
| O11 |
S1 |
N13 |
H132 |
85.2 |
67.4 |
| O12 |
S1 |
O11 |
C2 |
116.3 |
236.8 |
| O11 |
S1 |
C2 |
C7 |
186.6 |
22.5 |
| O11 |
S1 |
C2 |
C3 |
6.5 |
202.6 |
| N13 |
S1 |
C2 |
O12 |
243.6 |
112.6 |
| N13 |
S1 |
C2 |
O11 |
119.4 |
247.5 |
| C2 |
S1 |
N13 |
H131 |
87.8 |
359.9 |
| C2 |
S1 |
N13 |
H132 |
327.8 |
180.0 |
| O12 |
S1 |
C2 |
O11 |
235.8 |
134.9 |
| C7 |
C2 |
S1 |
C3 |
180.1 |
179.9 |
| S1 |
C2 |
C7 |
C6 |
180.1 |
179.8 |
| S1 |
C2 |
C7 |
H7 |
0.1 |
0.0 |
| S1 |
C2 |
C3 |
C4 |
179.9 |
180.0 |
| S1 |
C2 |
C3 |
H3 |
359.9 |
359.9 |
| H131 |
N13 |
S1 |
O12 |
336.0 |
112.5 |
| H131 |
N13 |
S1 |
O11 |
205.2 |
247.3 |
| H131 |
N13 |
S1 |
C2 |
87.8 |
359.9 |
| S1 |
N13 |
H131 |
H132 |
240.0 |
180.1 |
| H132 |
N13 |
S1 |
O12 |
216.0 |
292.6 |
| H132 |
N13 |
S1 |
O11 |
85.2 |
67.4 |
| H132 |
N13 |
S1 |
C2 |
327.8 |
180.0 |
| S1 |
N13 |
H132 |
H131 |
120.0 |
179.9 |
| S1 |
C2 |
C7 |
C3 |
179.9 |
180.1 |
| C7 |
C2 |
C3 |
C4 |
359.8 |
0.0 |
| C7 |
C2 |
C3 |
H3 |
179.9 |
180.0 |
| C6 |
C7 |
C2 |
H7 |
180.0 |
179.7 |
| C2 |
C7 |
C6 |
CL8 |
179.7 |
180.0 |
| C2 |
C7 |
C6 |
C5 |
0.0 |
0.6 |
| S1 |
C2 |
C3 |
C7 |
180.1 |
179.9 |
| C3 |
C2 |
C7 |
C6 |
0.1 |
359.7 |
| C3 |
C2 |
C7 |
H7 |
180.1 |
179.9 |
| C5 |
C4 |
C3 |
C2 |
0.0 |
360.0 |
| CL9 |
C4 |
C3 |
C2 |
179.9 |
180.0 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
| C6 |
C7 |
C2 |
C3 |
0.1 |
359.7 |
| C2 |
C7 |
C6 |
H7 |
180.0 |
180.3 |
| CL8 |
C6 |
C7 |
C5 |
179.6 |
179.5 |
| C7 |
C6 |
C5 |
N10 |
180.3 |
179.7 |
| C7 |
C6 |
C5 |
C4 |
359.8 |
359.5 |
| H7 |
C7 |
C2 |
C3 |
180.1 |
179.9 |
| C2 |
C7 |
H7 |
C6 |
180.0 |
179.7 |
| H7 |
C7 |
C6 |
CL8 |
359.7 |
359.8 |
| H7 |
C7 |
C6 |
C5 |
180.0 |
180.3 |
| CL8 |
C6 |
C7 |
H7 |
359.7 |
359.8 |
| C7 |
C6 |
CL8 |
C5 |
180.3 |
180.5 |
| CL8 |
C6 |
C5 |
N10 |
0.6 |
0.2 |
| CL8 |
C6 |
C5 |
C4 |
180.1 |
180.0 |
| C5 |
C6 |
C7 |
H7 |
180.0 |
180.3 |
| C7 |
C6 |
C5 |
CL8 |
179.7 |
179.5 |
| N10 |
C5 |
C6 |
C4 |
180.5 |
180.2 |
| C6 |
C5 |
N10 |
H101 |
22.8 |
179.8 |
| C6 |
C5 |
N10 |
H102 |
262.8 |
359.5 |
| C6 |
C5 |
C4 |
CL9 |
180.3 |
180.3 |
| C6 |
C5 |
C4 |
C3 |
0.1 |
0.3 |
| C6 |
C5 |
N10 |
C4 |
179.5 |
179.8 |
| N10 |
C5 |
C4 |
CL9 |
359.8 |
0.0 |
| N10 |
C5 |
C4 |
C3 |
179.7 |
180.0 |
| H101 |
N10 |
C5 |
H102 |
120.0 |
180.3 |
| C2 |
C3 |
C4 |
C5 |
0.0 |
360.0 |
| C6 |
C5 |
C4 |
N10 |
180.5 |
180.2 |
| C4 |
C5 |
N10 |
H101 |
203.3 |
0.0 |
| C4 |
C5 |
N10 |
H102 |
83.3 |
179.7 |
| CL9 |
C4 |
C5 |
C3 |
180.2 |
180.0 |
| C5 |
C4 |
C3 |
H3 |
180.0 |
180.0 |
| H101 |
N10 |
C5 |
C4 |
203.3 |
0.0 |
| C5 |
N10 |
H101 |
H102 |
240.0 |
179.7 |
| H102 |
N10 |
C5 |
C4 |
83.3 |
179.7 |
| C5 |
N10 |
H102 |
H101 |
120.0 |
180.3 |
| C2 |
C3 |
C4 |
CL9 |
179.9 |
180.0 |
| C5 |
C4 |
CL9 |
C3 |
179.8 |
180.0 |
| CL9 |
C4 |
C3 |
H3 |
359.8 |
0.0 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
| C5 |
C4 |
C3 |
CL9 |
180.2 |
180.0 |
| C2 |
C3 |
H3 |
C4 |
180.0 |
180.0 |