PDB Chemical Component SD3
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SD3
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C |
O |
1.226 |
1.342 |
| C |
CA |
1.455 |
1.507 |
| C |
OXT |
1.222 |
1.208 |
| N |
CA |
1.472 |
1.469 |
| N |
HN |
1.000 |
1.009 |
| N |
HNA |
1.000 |
1.008 |
| CA |
CB |
1.557 |
1.530 |
| CA |
HA |
1.100 |
1.090 |
| CB |
CG |
1.453 |
1.507 |
| CB |
HB |
1.100 |
1.090 |
| CB |
HBA |
1.100 |
1.090 |
| CG |
OD1 |
1.223 |
1.213 |
| CG |
ND2 |
1.284 |
1.347 |
| OAD |
ND2 |
1.267 |
1.416 |
| OAD |
HOAD |
0.950 |
0.967 |
| ND2 |
HND2 |
1.000 |
0.970 |
| O |
H8 |
0.950 |
0.967 |
Bond Angles for SD3
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
CA |
121.1 |
120.0 |
| O |
C |
OXT |
117.9 |
120.0 |
| C |
O |
H8 |
109.5 |
117.0 |
| CA |
C |
OXT |
121.0 |
120.0 |
| C |
CA |
N |
108.8 |
109.5 |
| C |
CA |
CB |
111.9 |
109.4 |
| C |
CA |
HA |
108.8 |
109.5 |
| CA |
N |
HN |
109.5 |
111.0 |
| CA |
N |
HNA |
109.5 |
111.0 |
| N |
CA |
CB |
110.9 |
109.5 |
| N |
CA |
HA |
109.8 |
109.5 |
| HN |
N |
HNA |
109.5 |
111.0 |
| CB |
CA |
HA |
106.6 |
109.5 |
| CA |
CB |
CG |
113.1 |
109.5 |
| CA |
CB |
HB |
108.3 |
109.5 |
| CA |
CB |
HBA |
108.3 |
109.5 |
| CG |
CB |
HB |
108.3 |
109.5 |
| CG |
CB |
HBA |
108.3 |
109.5 |
| CB |
CG |
OD1 |
120.7 |
120.0 |
| CB |
CG |
ND2 |
121.2 |
120.0 |
| HB |
CB |
HBA |
110.6 |
109.4 |
| OD1 |
CG |
ND2 |
118.1 |
120.0 |
| CG |
ND2 |
OAD |
120.4 |
120.0 |
| CG |
ND2 |
HND2 |
119.8 |
120.0 |
| ND2 |
OAD |
HOAD |
109.5 |
114.0 |
| OAD |
ND2 |
HND2 |
119.8 |
120.0 |
Torsion Angles for SD3
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
C |
O |
OXT |
180.1 |
180.2 |
| O |
C |
CA |
N |
59.5 |
200.0 |
| O |
C |
CA |
CB |
296.5 |
80.0 |
| O |
C |
CA |
HA |
179.0 |
320.1 |
| O |
C |
CA |
OXT |
179.9 |
179.8 |
| CA |
C |
O |
H8 |
180.1 |
180.0 |
| C |
CA |
N |
HN |
180.0 |
176.1 |
| C |
CA |
N |
HNA |
300.0 |
300.0 |
| N |
CA |
C |
CB |
122.9 |
120.0 |
| N |
CA |
C |
HA |
240.5 |
240.0 |
| CB |
CA |
C |
HA |
117.5 |
120.0 |
| C |
CA |
CB |
CG |
183.2 |
185.0 |
| C |
CA |
CB |
HB |
303.2 |
305.0 |
| C |
CA |
CB |
HBA |
63.2 |
65.0 |
| O |
C |
OXT |
CA |
180.1 |
180.2 |
| OXT |
C |
O |
H8 |
360.0 |
359.8 |
| OXT |
C |
CA |
N |
239.6 |
20.2 |
| OXT |
C |
CA |
CB |
116.6 |
260.2 |
| OXT |
C |
CA |
HA |
359.1 |
140.2 |
| N |
CA |
C |
OXT |
239.6 |
20.2 |
| C |
CA |
N |
CB |
236.5 |
240.0 |
| C |
CA |
N |
HA |
118.9 |
120.0 |
| HN |
N |
CA |
HNA |
240.0 |
236.0 |
| CB |
CA |
N |
HA |
242.4 |
240.0 |
| N |
CA |
CB |
CG |
61.5 |
65.0 |
| N |
CA |
CB |
HB |
181.5 |
185.0 |
| N |
CA |
CB |
HBA |
301.5 |
305.0 |
| CA |
N |
HN |
HNA |
120.0 |
123.9 |
| HN |
N |
CA |
CB |
303.5 |
296.0 |
| HN |
N |
CA |
HA |
61.0 |
56.0 |
| CA |
N |
HNA |
HN |
240.0 |
236.1 |
| HNA |
N |
CA |
CB |
63.5 |
60.0 |
| HNA |
N |
CA |
HA |
181.1 |
180.0 |
| CB |
CA |
C |
OXT |
116.6 |
260.2 |
| C |
CA |
CB |
N |
121.7 |
120.0 |
| C |
CA |
CB |
HA |
241.2 |
240.0 |
| CB |
CA |
N |
HN |
303.5 |
296.0 |
| CB |
CA |
N |
HNA |
63.5 |
60.0 |
| N |
CA |
CB |
HA |
119.5 |
120.0 |
| CG |
CB |
CA |
HB |
240.0 |
240.0 |
| CG |
CB |
CA |
HBA |
120.0 |
120.0 |
| CA |
CB |
CG |
OD1 |
261.9 |
360.0 |
| CA |
CB |
CG |
ND2 |
80.9 |
180.0 |
| HB |
CB |
CA |
HBA |
240.0 |
240.0 |
| HA |
CA |
C |
OXT |
359.1 |
140.2 |
| C |
CA |
HA |
N |
241.0 |
240.0 |
| C |
CA |
HA |
CB |
120.8 |
120.0 |
| HA |
CA |
N |
HN |
61.0 |
56.0 |
| HA |
CA |
N |
HNA |
181.1 |
180.0 |
| N |
CA |
HA |
CB |
239.8 |
240.0 |
| HA |
CA |
CB |
CG |
302.0 |
305.0 |
| HA |
CA |
CB |
HB |
62.0 |
65.0 |
| HA |
CA |
CB |
HBA |
182.0 |
185.0 |
| CG |
CB |
CA |
HA |
302.0 |
305.0 |
| CA |
CB |
CG |
HB |
120.0 |
120.0 |
| CA |
CB |
CG |
HBA |
240.0 |
240.0 |
| HB |
CB |
CG |
HBA |
120.0 |
120.0 |
| OD1 |
CG |
CB |
ND2 |
181.0 |
180.0 |
| CB |
CG |
ND2 |
OAD |
93.2 |
180.0 |
| CB |
CG |
ND2 |
HND2 |
273.2 |
360.0 |
| HB |
CB |
CA |
HA |
62.0 |
65.0 |
| CA |
CB |
HB |
CG |
237.0 |
240.0 |
| CA |
CB |
HB |
HBA |
118.5 |
120.0 |
| CG |
CB |
HB |
HBA |
241.5 |
240.0 |
| HB |
CB |
CG |
OD1 |
141.8 |
240.0 |
| HB |
CB |
CG |
ND2 |
320.8 |
60.0 |
| HBA |
CB |
CA |
HA |
182.0 |
185.0 |
| CA |
CB |
HBA |
CG |
123.0 |
120.0 |
| CA |
CB |
HBA |
HB |
241.5 |
240.0 |
| CG |
CB |
HBA |
HB |
118.5 |
120.0 |
| HBA |
CB |
CG |
OD1 |
21.9 |
120.0 |
| HBA |
CB |
CG |
ND2 |
200.9 |
300.1 |
| OD1 |
CG |
CB |
HB |
141.8 |
240.0 |
| OD1 |
CG |
CB |
HBA |
21.9 |
120.0 |
| CB |
CG |
OD1 |
ND2 |
179.0 |
180.0 |
| OD1 |
CG |
ND2 |
OAD |
272.2 |
360.0 |
| OD1 |
CG |
ND2 |
HND2 |
92.2 |
180.0 |
| ND2 |
CG |
CB |
HB |
320.8 |
60.0 |
| ND2 |
CG |
CB |
HBA |
200.9 |
300.1 |
| CB |
CG |
ND2 |
OD1 |
181.0 |
180.0 |
| CG |
ND2 |
OAD |
HOAD |
33.6 |
180.0 |
| OAD |
ND2 |
CG |
HND2 |
180.0 |
180.0 |
| CG |
ND2 |
OAD |
HND2 |
180.0 |
180.0 |
| HOAD |
OAD |
ND2 |
HND2 |
213.6 |
360.0 |
| CG |
ND2 |
HND2 |
OAD |
180.0 |
180.0 |
| HND2 |
ND2 |
OAD |
HOAD |
213.6 |
360.0 |
| H8 |
O |
C |
CA |
180.1 |
180.0 |
| H8 |
O |
C |
OXT |
360.0 |
359.8 |