PDB Chemical Component SCY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SCY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.446 |
1.469 |
| N |
H |
1.021 |
1.009 |
| N |
H2 |
1.020 |
1.010 |
| CA |
CB |
1.593 |
1.529 |
| CA |
C |
1.497 |
1.507 |
| CA |
HA |
1.115 |
1.090 |
| CB |
SG |
1.799 |
1.809 |
| CB |
HB2 |
1.115 |
1.090 |
| CB |
HB3 |
1.115 |
1.090 |
| SG |
CD |
1.833 |
1.711 |
| CD |
OCD |
1.202 |
1.214 |
| CD |
CE |
1.543 |
1.507 |
| CE |
HE1 |
1.116 |
1.088 |
| CE |
HE2 |
1.114 |
1.090 |
| CE |
HE3 |
1.116 |
1.089 |
| C |
O |
1.227 |
1.207 |
| C |
OXT |
1.329 |
1.342 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for SCY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
110.6 |
106.7 |
| CA |
N |
H2 |
111.8 |
106.7 |
| N |
CA |
CB |
110.6 |
109.5 |
| N |
CA |
C |
113.3 |
109.4 |
| N |
CA |
HA |
104.8 |
109.5 |
| H |
N |
H2 |
111.8 |
106.7 |
| CB |
CA |
C |
105.5 |
109.5 |
| CB |
CA |
HA |
112.8 |
109.4 |
| CA |
CB |
SG |
103.8 |
109.5 |
| CA |
CB |
HB2 |
114.3 |
109.5 |
| CA |
CB |
HB3 |
114.3 |
109.4 |
| C |
CA |
HA |
110.0 |
109.5 |
| CA |
C |
O |
119.5 |
120.0 |
| CA |
C |
OXT |
122.0 |
120.0 |
| SG |
CB |
HB2 |
114.4 |
109.5 |
| SG |
CB |
HB3 |
114.4 |
109.5 |
| CB |
SG |
CD |
95.3 |
100.0 |
| HB2 |
CB |
HB3 |
96.2 |
109.4 |
| SG |
CD |
OCD |
118.0 |
120.0 |
| SG |
CD |
CE |
120.8 |
120.1 |
| OCD |
CD |
CE |
121.1 |
120.0 |
| CD |
CE |
HE1 |
120.9 |
109.6 |
| CD |
CE |
HE2 |
108.2 |
109.4 |
| CD |
CE |
HE3 |
108.2 |
109.5 |
| HE1 |
CE |
HE2 |
108.1 |
109.4 |
| HE1 |
CE |
HE3 |
108.1 |
109.5 |
| HE2 |
CE |
HE3 |
101.8 |
109.5 |
| O |
C |
OXT |
118.4 |
120.0 |
| C |
OXT |
HXT |
122.0 |
120.1 |
Torsion Angles for SCY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.3 |
113.7 |
| CB |
CA |
N |
C |
241.8 |
239.9 |
| CB |
CA |
N |
HA |
121.9 |
120.0 |
| N |
CA |
CB |
SG |
296.4 |
300.0 |
| N |
CA |
CB |
HB2 |
61.7 |
180.0 |
| N |
CA |
CB |
HB3 |
171.1 |
60.0 |
| C |
CA |
N |
HA |
240.0 |
240.0 |
| N |
CA |
C |
O |
162.1 |
330.0 |
| N |
CA |
C |
OXT |
345.6 |
150.0 |
| CA |
N |
H |
H2 |
234.7 |
246.3 |
| H |
N |
CA |
CB |
180.0 |
53.7 |
| H |
N |
CA |
C |
298.2 |
173.8 |
| H |
N |
CA |
HA |
58.2 |
293.8 |
| CA |
N |
H2 |
H |
124.7 |
113.7 |
| H2 |
N |
CA |
CB |
54.7 |
300.0 |
| H2 |
N |
CA |
C |
172.9 |
60.0 |
| H2 |
N |
CA |
HA |
292.8 |
180.0 |
| CB |
CA |
N |
H |
180.0 |
53.7 |
| CB |
CA |
N |
H2 |
54.7 |
300.0 |
| N |
CA |
CB |
C |
122.9 |
120.0 |
| N |
CA |
CB |
HA |
243.0 |
240.0 |
| C |
CA |
CB |
HA |
120.1 |
120.0 |
| CB |
CA |
C |
O |
283.2 |
90.0 |
| CB |
CA |
C |
OXT |
106.7 |
270.0 |
| SG |
CB |
CA |
HB2 |
234.7 |
120.1 |
| SG |
CB |
CA |
HB3 |
125.3 |
240.0 |
| CA |
CB |
SG |
CD |
111.1 |
180.0 |
| HB2 |
CB |
CA |
HB3 |
250.5 |
119.9 |
| C |
CA |
N |
H |
298.2 |
173.8 |
| C |
CA |
N |
H2 |
172.9 |
60.0 |
| N |
CA |
C |
CB |
238.9 |
240.0 |
| N |
CA |
C |
HA |
117.0 |
120.0 |
| CB |
CA |
C |
HA |
238.1 |
240.0 |
| C |
CA |
CB |
SG |
173.5 |
180.0 |
| C |
CA |
CB |
HB2 |
298.8 |
60.0 |
| C |
CA |
CB |
HB3 |
48.2 |
300.0 |
| O |
C |
CA |
OXT |
176.5 |
180.0 |
| CA |
C |
OXT |
HXT |
180.0 |
179.9 |
| HA |
CA |
N |
H |
58.2 |
293.8 |
| HA |
CA |
N |
H2 |
292.8 |
180.0 |
| N |
CA |
HA |
CB |
120.4 |
120.0 |
| N |
CA |
HA |
C |
237.8 |
240.0 |
| CB |
CA |
HA |
C |
117.4 |
120.1 |
| HA |
CA |
CB |
SG |
53.4 |
60.0 |
| HA |
CA |
CB |
HB2 |
178.7 |
299.9 |
| HA |
CA |
CB |
HB3 |
288.2 |
180.0 |
| HA |
CA |
C |
O |
45.1 |
210.0 |
| HA |
CA |
C |
OXT |
228.7 |
30.0 |
| SG |
CB |
CA |
C |
173.5 |
180.0 |
| SG |
CB |
CA |
HA |
53.4 |
60.0 |
| CA |
CB |
SG |
HB2 |
125.2 |
240.0 |
| CA |
CB |
SG |
HB3 |
234.8 |
120.0 |
| HB2 |
CB |
SG |
HB3 |
109.5 |
240.0 |
| CB |
SG |
CD |
OCD |
71.3 |
0.0 |
| CB |
SG |
CD |
CE |
250.9 |
180.0 |
| HB2 |
CB |
CA |
C |
298.8 |
60.0 |
| HB2 |
CB |
CA |
HA |
178.7 |
299.9 |
| CA |
CB |
HB2 |
SG |
240.5 |
120.1 |
| CA |
CB |
HB2 |
HB3 |
120.2 |
240.1 |
| SG |
CB |
HB2 |
HB3 |
239.7 |
120.0 |
| HB2 |
CB |
SG |
CD |
345.8 |
300.0 |
| HB3 |
CB |
CA |
C |
48.2 |
300.0 |
| HB3 |
CB |
CA |
HA |
288.2 |
180.0 |
| CA |
CB |
HB3 |
SG |
119.5 |
240.0 |
| CA |
CB |
HB3 |
HB2 |
239.8 |
119.9 |
| SG |
CB |
HB3 |
HB2 |
120.3 |
240.0 |
| HB3 |
CB |
SG |
CD |
236.3 |
60.0 |
| CD |
SG |
CB |
HB2 |
345.8 |
300.0 |
| CD |
SG |
CB |
HB3 |
236.3 |
60.0 |
| OCD |
CD |
SG |
CE |
180.4 |
180.0 |
| SG |
CD |
CE |
HE1 |
180.0 |
180.0 |
| SG |
CD |
CE |
HE2 |
305.3 |
300.0 |
| SG |
CD |
CE |
HE3 |
54.8 |
59.9 |
| SG |
CD |
OCD |
CE |
179.6 |
180.0 |
| OCD |
CD |
CE |
HE1 |
359.6 |
0.0 |
| OCD |
CD |
CE |
HE2 |
124.8 |
120.0 |
| OCD |
CD |
CE |
HE3 |
234.4 |
239.9 |
| SG |
CD |
CE |
OCD |
180.4 |
180.0 |
| HE1 |
CE |
CD |
HE2 |
234.7 |
240.1 |
| HE1 |
CE |
CD |
HE3 |
125.2 |
120.1 |
| HE2 |
CE |
CD |
HE3 |
250.5 |
240.0 |
| CD |
CE |
HE1 |
HE2 |
125.3 |
120.0 |
| CD |
CE |
HE1 |
HE3 |
234.8 |
239.9 |
| HE2 |
CE |
HE1 |
HE3 |
109.5 |
120.0 |
| CD |
CE |
HE2 |
HE1 |
227.5 |
239.9 |
| CD |
CE |
HE2 |
HE3 |
113.8 |
119.9 |
| HE1 |
CE |
HE2 |
HE3 |
246.3 |
240.0 |
| CD |
CE |
HE3 |
HE1 |
132.5 |
120.1 |
| CD |
CE |
HE3 |
HE2 |
246.2 |
240.1 |
| HE1 |
CE |
HE3 |
HE2 |
113.7 |
119.9 |
| O |
C |
CA |
HA |
45.1 |
210.0 |
| CA |
C |
O |
OXT |
183.4 |
180.0 |
| O |
C |
OXT |
HXT |
3.5 |
359.9 |
| OXT |
C |
CA |
HA |
228.7 |
30.0 |
| CA |
C |
OXT |
O |
176.5 |
180.0 |