PDB Chemical Component SCS
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SCS
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.461 |
1.469 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| CA |
C |
1.523 |
1.507 |
| CA |
CB |
1.538 |
1.530 |
| C |
O |
1.228 |
1.208 |
| C |
OXT |
1.323 |
1.342 |
| CB |
SG |
1.835 |
1.815 |
| CB |
H3 |
1.100 |
1.090 |
| CB |
H4 |
1.100 |
1.090 |
| SG |
SD |
2.033 |
2.050 |
| SD |
CZ |
1.820 |
1.814 |
| CE |
CZ |
1.509 |
1.530 |
| CE |
H5 |
1.100 |
1.090 |
| CE |
H6 |
1.100 |
1.089 |
| CE |
H7 |
1.100 |
1.090 |
| CZ |
H8 |
1.100 |
1.090 |
| CZ |
H9 |
1.100 |
1.091 |
| OXT |
HXT |
0.950 |
0.967 |
| CA |
HA |
1.100 |
1.090 |
Bond Angles for SCS
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
109.5 |
110.9 |
| CA |
N |
H2 |
109.5 |
111.0 |
| N |
CA |
C |
110.8 |
109.5 |
| N |
CA |
CB |
110.6 |
109.5 |
| N |
CA |
HA |
107.7 |
109.5 |
| H |
N |
H2 |
109.5 |
111.1 |
| C |
CA |
CB |
109.0 |
109.4 |
| CA |
C |
O |
121.4 |
120.0 |
| CA |
C |
OXT |
115.9 |
120.0 |
| C |
CA |
HA |
109.3 |
109.5 |
| CA |
CB |
SG |
115.0 |
109.5 |
| CA |
CB |
H3 |
107.7 |
109.5 |
| CA |
CB |
H4 |
106.4 |
109.5 |
| CB |
CA |
HA |
109.5 |
109.4 |
| O |
C |
OXT |
122.8 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| SG |
CB |
H3 |
107.7 |
109.4 |
| SG |
CB |
H4 |
106.4 |
109.5 |
| CB |
SG |
SD |
103.6 |
103.0 |
| H3 |
CB |
H4 |
113.9 |
109.5 |
| SG |
SD |
CZ |
102.9 |
103.0 |
| SD |
CZ |
CE |
113.1 |
109.5 |
| SD |
CZ |
H8 |
108.3 |
109.4 |
| SD |
CZ |
H9 |
107.5 |
109.4 |
| CZ |
CE |
H5 |
109.5 |
109.4 |
| CZ |
CE |
H6 |
109.5 |
109.5 |
| CZ |
CE |
H7 |
109.4 |
109.5 |
| CE |
CZ |
H8 |
108.3 |
109.5 |
| CE |
CZ |
H9 |
107.4 |
109.5 |
| H5 |
CE |
H6 |
109.5 |
109.5 |
| H5 |
CE |
H7 |
109.5 |
109.4 |
| H6 |
CE |
H7 |
109.5 |
109.5 |
| H8 |
CZ |
H9 |
112.4 |
109.5 |
Torsion Angles for SCS
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| C |
CA |
N |
CB |
121.0 |
120.0 |
| N |
CA |
C |
O |
345.3 |
340.0 |
| N |
CA |
C |
OXT |
165.9 |
160.0 |
| C |
CA |
N |
HA |
240.6 |
240.0 |
| N |
CA |
CB |
SG |
61.4 |
294.8 |
| N |
CA |
CB |
H3 |
181.4 |
54.7 |
| N |
CA |
CB |
H4 |
303.9 |
174.8 |
| CB |
CA |
N |
HA |
119.6 |
120.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H |
N |
CA |
C |
337.2 |
68.1 |
| H |
N |
CA |
CB |
216.2 |
308.1 |
| H |
N |
CA |
HA |
96.6 |
188.2 |
| CA |
N |
H2 |
H |
240.0 |
236.1 |
| H2 |
N |
CA |
C |
97.2 |
192.1 |
| H2 |
N |
CA |
CB |
336.2 |
72.1 |
| H2 |
N |
CA |
HA |
216.6 |
312.2 |
| C |
CA |
N |
H |
337.2 |
68.1 |
| C |
CA |
N |
H2 |
97.2 |
192.1 |
| N |
CA |
C |
CB |
238.1 |
239.9 |
| N |
CA |
C |
HA |
118.5 |
120.0 |
| C |
CA |
CB |
SG |
299.3 |
174.8 |
| C |
CA |
CB |
H3 |
59.3 |
294.7 |
| C |
CA |
CB |
H4 |
181.8 |
54.8 |
| CB |
CA |
C |
HA |
240.3 |
240.1 |
| O |
C |
CA |
OXT |
179.4 |
180.1 |
| CA |
C |
OXT |
HXT |
179.3 |
180.0 |
| CB |
CA |
N |
H |
216.2 |
308.1 |
| CB |
CA |
N |
H2 |
336.2 |
72.1 |
| N |
CA |
CB |
C |
122.0 |
120.1 |
| N |
CA |
CB |
HA |
241.5 |
240.0 |
| CB |
CA |
C |
O |
107.2 |
100.1 |
| CB |
CA |
C |
OXT |
287.8 |
280.0 |
| C |
CA |
CB |
HA |
119.5 |
119.9 |
| SG |
CB |
CA |
H3 |
240.0 |
240.1 |
| SG |
CB |
CA |
H4 |
117.5 |
120.0 |
| CA |
CB |
SG |
SD |
203.9 |
77.1 |
| H3 |
CB |
CA |
H4 |
237.5 |
239.9 |
| O |
C |
CA |
CB |
107.2 |
100.1 |
| CA |
C |
O |
OXT |
180.7 |
179.9 |
| O |
C |
CA |
HA |
226.8 |
220.0 |
| O |
C |
OXT |
HXT |
360.0 |
359.9 |
| OXT |
C |
CA |
CB |
287.8 |
280.0 |
| CA |
C |
OXT |
O |
179.3 |
180.1 |
| OXT |
C |
CA |
HA |
47.5 |
39.9 |
| CA |
CB |
SG |
H3 |
120.0 |
119.9 |
| CA |
CB |
SG |
H4 |
242.5 |
240.0 |
| SG |
CB |
CA |
HA |
179.8 |
54.8 |
| H3 |
CB |
SG |
H4 |
122.5 |
120.0 |
| CB |
SG |
SD |
CZ |
87.6 |
85.0 |
| CA |
CB |
H3 |
SG |
235.5 |
240.0 |
| CA |
CB |
H3 |
H4 |
117.7 |
120.1 |
| H3 |
CB |
CA |
HA |
299.8 |
174.7 |
| SG |
CB |
H3 |
H4 |
242.3 |
240.0 |
| H3 |
CB |
SG |
SD |
83.9 |
317.2 |
| CA |
CB |
H4 |
SG |
123.1 |
120.0 |
| CA |
CB |
H4 |
H3 |
241.5 |
240.0 |
| H4 |
CB |
CA |
HA |
62.3 |
294.8 |
| SG |
CB |
H4 |
H3 |
118.5 |
119.9 |
| H4 |
CB |
SG |
SD |
321.5 |
197.2 |
| SD |
SG |
CB |
H3 |
83.9 |
317.2 |
| SD |
SG |
CB |
H4 |
321.5 |
197.2 |
| SG |
SD |
CZ |
CE |
7.7 |
70.0 |
| SG |
SD |
CZ |
H8 |
127.7 |
190.0 |
| SG |
SD |
CZ |
H9 |
249.3 |
310.0 |
| SD |
CZ |
CE |
H5 |
238.2 |
300.0 |
| SD |
CZ |
CE |
H6 |
358.2 |
60.0 |
| SD |
CZ |
CE |
H7 |
118.2 |
180.1 |
| CE |
CZ |
SD |
H8 |
240.0 |
240.0 |
| CE |
CZ |
SD |
H9 |
118.4 |
120.0 |
| H8 |
CZ |
SD |
H9 |
238.4 |
240.1 |
| SD |
CZ |
CE |
H8 |
120.0 |
120.0 |
| SD |
CZ |
CE |
H9 |
241.6 |
240.0 |
| H5 |
CE |
CZ |
H6 |
240.0 |
240.0 |
| H5 |
CE |
CZ |
H7 |
120.0 |
119.9 |
| H6 |
CE |
CZ |
H7 |
240.0 |
239.9 |
| H8 |
CZ |
CE |
H9 |
121.6 |
120.0 |
| CZ |
CE |
H5 |
H6 |
120.0 |
120.0 |
| CZ |
CE |
H5 |
H7 |
240.0 |
240.1 |
| H5 |
CE |
CZ |
H8 |
118.2 |
180.0 |
| H5 |
CE |
CZ |
H9 |
356.6 |
60.0 |
| H6 |
CE |
H5 |
H7 |
120.0 |
120.1 |
| CZ |
CE |
H6 |
H5 |
240.0 |
240.0 |
| CZ |
CE |
H6 |
H7 |
120.0 |
120.0 |
| H6 |
CE |
CZ |
H8 |
238.2 |
300.0 |
| H6 |
CE |
CZ |
H9 |
116.6 |
180.0 |
| H5 |
CE |
H6 |
H7 |
240.0 |
240.0 |
| CZ |
CE |
H7 |
H5 |
120.0 |
119.9 |
| CZ |
CE |
H7 |
H6 |
240.0 |
240.0 |
| H7 |
CE |
CZ |
H8 |
358.2 |
60.1 |
| H7 |
CE |
CZ |
H9 |
236.6 |
300.1 |
| H5 |
CE |
H7 |
H6 |
120.0 |
120.0 |
| SD |
CZ |
H8 |
CE |
237.0 |
240.0 |
| SD |
CZ |
H8 |
H9 |
118.5 |
119.9 |
| H8 |
CZ |
CE |
H5 |
118.2 |
180.0 |
| H8 |
CZ |
CE |
H6 |
238.2 |
300.0 |
| H8 |
CZ |
CE |
H7 |
358.2 |
60.1 |
| CE |
CZ |
H8 |
H9 |
241.5 |
240.0 |
| SD |
CZ |
H9 |
CE |
122.0 |
120.0 |
| SD |
CZ |
H9 |
H8 |
241.0 |
240.1 |
| H9 |
CZ |
CE |
H5 |
356.6 |
60.0 |
| H9 |
CZ |
CE |
H6 |
116.6 |
180.0 |
| H9 |
CZ |
CE |
H7 |
236.6 |
300.1 |
| CE |
CZ |
H9 |
H8 |
119.0 |
120.0 |
| HA |
CA |
N |
H |
96.6 |
188.2 |
| HA |
CA |
N |
H2 |
216.6 |
312.2 |
| N |
CA |
HA |
C |
239.6 |
239.9 |
| N |
CA |
HA |
CB |
120.2 |
120.0 |
| C |
CA |
HA |
CB |
240.6 |
240.1 |
| HA |
CA |
C |
O |
226.8 |
220.0 |
| HA |
CA |
C |
OXT |
47.5 |
39.9 |
| HA |
CA |
CB |
SG |
179.8 |
54.8 |
| HA |
CA |
CB |
H3 |
299.8 |
174.7 |
| HA |
CA |
CB |
H4 |
62.3 |
294.8 |