PDB Chemical Component SC9
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SC9
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C01 |
C05 |
1.378 |
1.355 |
| C01 |
N02 |
1.379 |
1.361 |
| C05 |
N04 |
1.355 |
1.333 |
| F24 |
C19 |
1.316 |
1.351 |
| N02 |
C06 |
1.355 |
1.369 |
| N02 |
C03 |
1.348 |
1.372 |
| C06 |
C07 |
1.391 |
1.360 |
| N04 |
C03 |
1.349 |
1.322 |
| C19 |
C20 |
1.396 |
1.382 |
| C19 |
C18 |
1.438 |
1.396 |
| C03 |
C09 |
1.454 |
1.418 |
| C07 |
C18 |
1.499 |
1.483 |
| C07 |
N08 |
1.380 |
1.345 |
| C20 |
C21 |
1.401 |
1.383 |
| C18 |
C23 |
1.405 |
1.394 |
| C09 |
N08 |
1.319 |
1.317 |
| C09 |
N10 |
1.366 |
1.386 |
| C21 |
C22 |
1.399 |
1.383 |
| C23 |
C22 |
1.407 |
1.380 |
| N10 |
C11 |
1.467 |
1.465 |
| C15 |
C14 |
1.400 |
1.382 |
| C15 |
N16 |
1.354 |
1.319 |
| C14 |
C13 |
1.404 |
1.387 |
| N16 |
C17 |
1.339 |
1.318 |
| C13 |
C12 |
1.407 |
1.387 |
| C17 |
C12 |
1.404 |
1.382 |
| C12 |
C11 |
1.497 |
1.507 |
| C01 |
H01 |
1.080 |
1.080 |
| C05 |
H05 |
1.080 |
1.080 |
| C06 |
H06 |
1.081 |
1.080 |
| N10 |
HN10 |
1.000 |
0.969 |
| C11 |
H111 |
1.100 |
1.090 |
| C11 |
H112 |
1.101 |
1.091 |
| C13 |
H13 |
1.080 |
1.080 |
| C14 |
H14 |
1.080 |
1.080 |
| C15 |
H15 |
1.080 |
1.080 |
| C17 |
H17 |
1.080 |
1.079 |
| C20 |
H20 |
1.080 |
1.080 |
| C21 |
H21 |
1.080 |
1.080 |
| C22 |
H22 |
1.080 |
1.080 |
| C23 |
H23 |
1.080 |
1.080 |
Bond Angles for SC9
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N02 |
C01 |
C05 |
104.9 |
107.2 |
| C01 |
C05 |
N04 |
111.3 |
108.5 |
| C05 |
C01 |
H01 |
127.6 |
126.4 |
| C01 |
C05 |
H05 |
124.3 |
125.7 |
| C01 |
N02 |
C06 |
131.3 |
133.6 |
| C01 |
N02 |
C03 |
107.7 |
107.1 |
| N02 |
C01 |
H01 |
127.6 |
126.4 |
| C03 |
N02 |
C06 |
120.8 |
119.3 |
| N02 |
C06 |
C07 |
120.1 |
119.8 |
| N02 |
C06 |
H06 |
120.0 |
120.1 |
| N02 |
C03 |
C09 |
119.0 |
118.9 |
| C06 |
C07 |
C18 |
124.5 |
119.5 |
| C06 |
C07 |
N08 |
119.6 |
121.1 |
| C07 |
C06 |
H06 |
120.0 |
120.1 |
| N04 |
C03 |
C09 |
129.7 |
133.1 |
| C19 |
C20 |
C21 |
120.8 |
120.1 |
| C19 |
C20 |
H20 |
119.6 |
119.9 |
| C19 |
C18 |
C23 |
117.3 |
119.7 |
| C03 |
C09 |
N08 |
119.2 |
119.7 |
| C03 |
C09 |
N10 |
116.8 |
120.1 |
| N08 |
C07 |
C18 |
115.9 |
119.5 |
| C07 |
C18 |
C23 |
117.7 |
120.2 |
| C20 |
C21 |
C22 |
119.3 |
120.3 |
| C21 |
C20 |
H20 |
119.6 |
120.0 |
| C20 |
C21 |
H21 |
120.3 |
119.8 |
| C18 |
C23 |
C22 |
121.6 |
119.9 |
| C18 |
C23 |
H23 |
119.2 |
120.0 |
| C09 |
N10 |
C11 |
115.7 |
120.0 |
| C09 |
N10 |
HN10 |
107.4 |
120.0 |
| C22 |
C21 |
H21 |
120.4 |
119.8 |
| C21 |
C22 |
H22 |
119.8 |
120.0 |
| C23 |
C22 |
H22 |
119.9 |
119.9 |
| C11 |
N10 |
HN10 |
107.4 |
120.0 |
| N10 |
C11 |
H111 |
109.5 |
109.5 |
| N10 |
C11 |
H112 |
109.6 |
109.5 |
| C15 |
C14 |
H14 |
120.8 |
120.4 |
| C15 |
N16 |
C17 |
117.0 |
121.8 |
| N16 |
C15 |
H15 |
118.3 |
119.7 |
| C14 |
C13 |
H13 |
120.6 |
120.8 |
| N16 |
C17 |
H17 |
117.7 |
119.7 |
| C12 |
C11 |
H111 |
109.5 |
109.5 |
| C12 |
C11 |
H112 |
109.6 |
109.5 |
| H111 |
C11 |
H112 |
109.3 |
109.4 |
Torsion Angles for SC9
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C05 |
C01 |
N02 |
C06 |
184.4 |
179.9 |
| C05 |
C01 |
N02 |
C03 |
359.9 |
0.0 |
| N02 |
C01 |
C05 |
H01 |
180.0 |
179.7 |
| N02 |
C01 |
C05 |
N04 |
0.7 |
360.0 |
| C05 |
C01 |
N02 |
H01 |
180.0 |
180.3 |
| N02 |
C01 |
C05 |
H05 |
180.7 |
180.0 |
| C03 |
N02 |
C01 |
C06 |
175.5 |
180.1 |
| C01 |
N02 |
C06 |
C07 |
179.6 |
180.1 |
| C01 |
N02 |
C06 |
H06 |
359.6 |
0.2 |
| C01 |
N02 |
C03 |
C09 |
180.7 |
179.9 |
| N04 |
C05 |
C01 |
H01 |
180.7 |
180.3 |
| C01 |
C05 |
N04 |
H05 |
180.0 |
180.0 |
| C05 |
N04 |
C03 |
C09 |
179.6 |
180.1 |
| F24 |
C19 |
C20 |
H20 |
0.4 |
360.0 |
| C06 |
N02 |
C01 |
C05 |
184.4 |
179.9 |
| C01 |
N02 |
C06 |
C03 |
175.1 |
180.1 |
| C06 |
N02 |
C01 |
H01 |
4.4 |
359.6 |
| C06 |
N02 |
C03 |
C09 |
356.8 |
0.0 |
| N02 |
C06 |
C07 |
C18 |
173.1 |
180.0 |
| N02 |
C06 |
C07 |
N08 |
356.5 |
0.1 |
| C07 |
C06 |
N02 |
H06 |
180.0 |
179.9 |
| C03 |
N02 |
C01 |
C05 |
359.9 |
0.0 |
| C01 |
N02 |
C03 |
C06 |
183.9 |
179.9 |
| C03 |
N02 |
C01 |
H01 |
179.9 |
179.7 |
| C03 |
N02 |
C06 |
C07 |
4.6 |
359.9 |
| C03 |
N02 |
C06 |
H06 |
184.6 |
180.0 |
| N04 |
C03 |
N02 |
C09 |
178.7 |
180.1 |
| N02 |
C03 |
C09 |
N08 |
0.9 |
360.0 |
| N02 |
C03 |
C09 |
N10 |
180.9 |
180.0 |
| N02 |
C06 |
C07 |
H06 |
180.0 |
180.1 |
| N08 |
C07 |
C06 |
C18 |
183.4 |
180.1 |
| C06 |
C07 |
C18 |
C23 |
169.1 |
354.1 |
| C01 |
C05 |
N04 |
C03 |
358.9 |
0.0 |
| N04 |
C03 |
N02 |
C06 |
175.5 |
180.1 |
| N02 |
C03 |
N04 |
C09 |
181.5 |
179.9 |
| N04 |
C03 |
C09 |
N08 |
182.4 |
179.9 |
| N04 |
C03 |
C09 |
N10 |
2.4 |
359.9 |
| C20 |
C19 |
C18 |
C23 |
358.5 |
0.3 |
| C19 |
C20 |
C21 |
C22 |
357.8 |
359.9 |
| C21 |
C20 |
C19 |
H20 |
180.0 |
180.1 |
| C19 |
C20 |
C21 |
H21 |
177.9 |
180.0 |
| C07 |
C18 |
C19 |
C23 |
186.0 |
179.7 |
| C19 |
C18 |
C23 |
C22 |
1.7 |
359.5 |
| C19 |
C18 |
C23 |
H23 |
181.8 |
179.7 |
| C09 |
C03 |
N02 |
C06 |
356.8 |
0.0 |
| C03 |
C09 |
N10 |
C11 |
173.3 |
180.0 |
| C03 |
C09 |
N10 |
HN10 |
293.3 |
0.1 |
| C06 |
C07 |
C18 |
N08 |
183.3 |
180.1 |
| C18 |
C07 |
C06 |
H06 |
353.1 |
360.0 |
| C19 |
C18 |
C07 |
C23 |
174.0 |
180.3 |
| C07 |
C18 |
C23 |
C22 |
176.2 |
179.7 |
| C07 |
C18 |
C23 |
H23 |
356.2 |
360.0 |
| C06 |
C07 |
N08 |
C18 |
176.9 |
179.9 |
| N08 |
C07 |
C06 |
H06 |
176.5 |
180.0 |
| C03 |
C09 |
N08 |
C07 |
0.1 |
0.1 |
| N08 |
C07 |
C18 |
C23 |
345.9 |
174.0 |
| C19 |
C20 |
C21 |
H20 |
180.0 |
179.9 |
| C22 |
C21 |
C20 |
H21 |
180.0 |
179.9 |
| C20 |
C21 |
C22 |
H22 |
182.3 |
180.0 |
| C18 |
C23 |
C22 |
H22 |
177.8 |
180.3 |
| C03 |
C09 |
N08 |
N10 |
180.0 |
180.0 |
| C09 |
N08 |
C07 |
C18 |
184.2 |
180.0 |
| C03 |
C09 |
N10 |
N08 |
180.0 |
180.0 |
| C11 |
N10 |
C09 |
HN10 |
240.0 |
180.0 |
| C09 |
N10 |
C11 |
H111 |
213.4 |
300.0 |
| C09 |
N10 |
C11 |
H112 |
333.4 |
60.0 |
| C22 |
C21 |
C20 |
H20 |
177.8 |
180.0 |
| C20 |
C21 |
C22 |
H21 |
180.0 |
180.1 |
| C18 |
C23 |
C22 |
C21 |
357.8 |
0.5 |
| C23 |
C22 |
C21 |
H22 |
180.0 |
179.8 |
| C18 |
C23 |
C22 |
H23 |
180.0 |
180.2 |
| C23 |
C22 |
C21 |
H21 |
182.3 |
179.7 |
| C21 |
C22 |
C23 |
H22 |
180.0 |
180.2 |
| C09 |
N10 |
C11 |
HN10 |
120.0 |
180.0 |
| C12 |
C11 |
N10 |
H111 |
240.0 |
239.9 |
| C12 |
C11 |
N10 |
H112 |
120.1 |
120.0 |
| H111 |
C11 |
N10 |
H112 |
240.1 |
240.0 |
| C15 |
C14 |
C13 |
H13 |
180.7 |
180.0 |
| N16 |
C15 |
C14 |
H14 |
178.4 |
180.0 |
| C15 |
N16 |
C17 |
H17 |
179.5 |
180.0 |
| C17 |
N16 |
C15 |
H15 |
181.5 |
179.7 |
| C13 |
C12 |
C11 |
H111 |
305.3 |
330.0 |
| C13 |
C12 |
C11 |
H112 |
185.4 |
210.0 |
| C17 |
C12 |
C11 |
H111 |
125.7 |
149.7 |
| C17 |
C12 |
C11 |
H112 |
5.7 |
29.7 |
| C12 |
C11 |
N10 |
HN10 |
333.5 |
360.0 |
| N10 |
C11 |
C12 |
H111 |
120.0 |
120.0 |
| N10 |
C11 |
C12 |
H112 |
239.9 |
240.0 |
| H111 |
C11 |
C12 |
H112 |
119.9 |
120.0 |
| N02 |
C01 |
H01 |
C05 |
180.0 |
180.3 |
| H01 |
C01 |
C05 |
N04 |
180.7 |
180.3 |
| H01 |
C01 |
C05 |
H05 |
0.7 |
0.3 |
| H01 |
C01 |
N02 |
C06 |
4.4 |
359.6 |
| H01 |
C01 |
N02 |
C03 |
179.9 |
179.7 |
| C01 |
C05 |
H05 |
N04 |
180.0 |
180.0 |
| H05 |
C05 |
C01 |
H01 |
0.7 |
0.3 |
| N02 |
C06 |
H06 |
C07 |
180.0 |
179.9 |
| H06 |
C06 |
C07 |
C18 |
353.1 |
360.0 |
| H06 |
C06 |
C07 |
N08 |
176.5 |
180.0 |
| C09 |
N10 |
HN10 |
C11 |
234.9 |
180.0 |
| HN10 |
N10 |
C11 |
H111 |
93.4 |
120.0 |
| HN10 |
N10 |
C11 |
H112 |
213.4 |
240.0 |
| H111 |
C11 |
N10 |
HN10 |
93.4 |
120.0 |
| N10 |
C11 |
H111 |
H112 |
120.1 |
120.0 |
| C12 |
C11 |
H111 |
H112 |
239.9 |
240.0 |
| H112 |
C11 |
N10 |
HN10 |
213.4 |
240.0 |
| N10 |
C11 |
H112 |
H111 |
239.9 |
240.0 |
| C12 |
C11 |
H112 |
H111 |
120.0 |
120.0 |
| H14 |
C14 |
C13 |
H13 |
0.7 |
0.0 |
| H15 |
C15 |
C14 |
H14 |
358.4 |
360.0 |
| H15 |
C15 |
N16 |
C17 |
181.5 |
179.7 |
| C19 |
C20 |
H20 |
C21 |
180.0 |
180.1 |
| H20 |
C20 |
C21 |
C22 |
177.8 |
180.0 |
| H20 |
C20 |
C21 |
H21 |
357.8 |
0.1 |
| C20 |
C21 |
H21 |
C22 |
180.0 |
179.9 |
| H21 |
C21 |
C20 |
H20 |
357.8 |
0.1 |
| H21 |
C21 |
C22 |
H22 |
2.3 |
359.9 |
| H22 |
C22 |
C21 |
H21 |
2.3 |
359.9 |
| C18 |
C23 |
H23 |
C22 |
180.0 |
179.8 |
| H23 |
C23 |
C22 |
H22 |
357.8 |
0.1 |