PDB Chemical Component SC1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SC1

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.430 1.317
C1 C6 1.526 1.501
C1 C7 1.486 1.470
C2 C3 1.514 1.501
C2 H2 1.104 1.080
C3 C4 1.620 1.530
C3 O1 1.603 1.429
C3 H3 1.114 1.090
C4 C5 1.560 1.534
C4 O2 1.431 1.429
C4 H4 1.115 1.090
C5 C6 1.591 1.530
C5 O3 1.433 1.430
C5 H5 1.115 1.090
C6 H61 1.115 1.090
C6 H62 1.114 1.090
C7 O4 1.222 1.215
C7 O5 1.201 1.348
O1 P1 1.690 1.611
O2 HO2 0.950 0.967
O3 C8 1.491 1.429
O5 HO5 0.950 0.967
P1 O6 1.541 1.480
P1 O7 1.575 1.610
P1 O8 1.535 1.610
O7 HO7 0.951 0.966
O8 HO8 0.951 0.967
C8 C9 1.612 1.530
C8 C10 1.529 1.506
C8 P2 1.902 1.823
C9 H91 1.115 1.089
C9 H92 1.115 1.090
C9 H93 1.116 1.090
C10 O9 1.277 1.208
C10 O10 1.261 1.342
O10 H10 0.950 0.967
P2 O11 1.552 1.610
P2 O12 1.506 1.479
P2 O13 1.564 1.610
O11 H11 0.950 0.967
O13 H13 0.950 0.967

Bond Angles for SC1

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C6 121.9 123.8
C2 C1 C7 119.7 118.1
C1 C2 C3 120.1 123.8
C1 C2 H2 117.2 118.1
C6 C1 C7 118.4 118.1
C1 C6 C5 115.9 110.1
C1 C6 H61 109.9 109.4
C1 C6 H62 109.8 109.4
C1 C7 O4 118.3 120.0
C1 C7 O5 116.2 120.0
C3 C2 H2 122.8 118.1
C2 C3 C4 113.0 110.3
C2 C3 O1 108.2 109.3
C2 C3 H3 109.1 109.3
C4 C3 O1 112.5 109.1
C4 C3 H3 104.4 109.4
C3 C4 C5 107.9 108.5
C3 C4 O2 104.8 109.6
C3 C4 H4 115.3 109.6
O1 C3 H3 109.6 109.4
C3 O1 P1 126.1 106.8
C5 C4 O2 114.6 110.1
C5 C4 H4 105.7 109.3
C4 C5 C6 105.4 108.7
C4 C5 O3 110.4 109.6
C4 C5 H5 111.4 109.6
O2 C4 H4 108.7 109.6
C4 O2 HO2 104.9 106.8
C6 C5 O3 108.9 109.6
C6 C5 H5 112.8 109.7
C5 C6 H61 109.8 109.4
C5 C6 H62 109.9 109.3
O3 C5 H5 108.0 109.6
C5 O3 C8 120.8 106.8
H61 C6 H62 100.4 109.2
O4 C7 O5 125.5 120.0
C7 O5 HO5 116.2 120.0
O1 P1 O6 105.4 109.5
O1 P1 O7 104.3 109.5
O1 P1 O8 99.7 109.5
O3 C8 C9 117.8 109.5
O3 C8 C10 108.4 109.5
O3 C8 P2 106.3 109.5
O6 P1 O7 114.1 109.5
O6 P1 O8 112.9 109.5
O7 P1 O8 118.1 109.5
P1 O7 HO7 104.2 106.8
P1 O8 HO8 99.7 106.8
C9 C8 C10 112.7 109.5
C9 C8 P2 99.0 109.5
C8 C9 H91 117.9 109.5
C8 C9 H92 109.2 109.5
C8 C9 H93 109.2 109.5
C10 C8 P2 112.2 109.5
C8 C10 O9 120.8 120.0
C8 C10 O10 113.0 120.0
C8 P2 O11 106.8 109.5
C8 P2 O12 108.1 109.5
C8 P2 O13 109.6 109.4
H91 C9 H92 109.2 109.5
H91 C9 H93 109.1 109.5
H92 C9 H93 100.9 109.4
O9 C10 O10 125.8 119.9
C10 O10 H10 113.0 120.0
O11 P2 O12 108.7 109.5
O11 P2 O13 109.3 109.5
P2 O11 H11 106.8 106.8
O12 P2 O13 114.0 109.5
P2 O13 H13 109.7 106.9

Torsion Angles for SC1

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 C1 C2 C7 179.0 180.0
C2 C1 C6 C5 14.5 17.2
C2 C1 C6 H61 139.7 256.9
C2 C1 C6 H62 249.2 137.4
C2 C1 C7 O4 326.0 360.0
C2 C1 C7 O5 145.5 180.0
C3 C2 C1 H2 180.0 180.1
C1 C2 C3 C4 20.5 17.0
C1 C2 C3 O1 255.2 257.1
C1 C2 C3 H3 136.2 137.3
C2 C1 C6 C7 181.0 180.0
C6 C1 C2 C3 359.8 359.6
C6 C1 C2 H2 179.8 179.5
C6 C1 C7 O4 146.9 180.0
C6 C1 C7 O5 326.5 0.0
C4 C5 C6 C1 312.5 310.3
C1 C6 C5 O3 194.1 190.5
C1 C6 C5 H5 74.2 70.2
C5 C6 C1 H61 234.8 120.2
C5 C6 C1 H62 125.2 239.8
H61 C6 C1 H62 250.5 119.6
C2 C1 C7 C6 179.1 180.0
C7 C1 C2 C3 180.8 179.6
C7 C1 C2 H2 0.8 359.5
C7 C1 C6 C5 193.5 197.2
C7 C1 C6 H61 318.8 76.9
C7 C1 C6 H62 68.3 317.3
O4 C7 C1 O5 180.5 180.0
C1 C7 O5 HO5 180.0 180.0
C3 C2 C1 C6 359.8 359.6
C3 C2 C1 C7 180.8 179.6
C1 C2 C3 H2 180.0 179.9
C4 C3 C2 O1 125.2 119.9
C4 C3 C2 H3 244.3 239.7
C2 C3 C4 C5 304.9 310.6
C2 C3 C4 O2 182.3 190.3
C2 C3 C4 H4 62.8 70.0
O1 C3 C2 H3 119.1 119.8
C2 C3 O1 P1 262.4 240.0
H2 C2 C1 C6 179.8 179.5
H2 C2 C1 C7 0.8 359.5
C1 C2 H2 C3 180.0 180.1
H2 C2 C3 C4 200.5 197.1
H2 C2 C3 O1 75.2 77.2
H2 C2 C3 H3 316.1 317.4
C4 C3 C2 H2 200.5 197.1
C2 C3 C4 O1 237.1 240.0
C2 C3 C4 H3 118.4 120.3
O1 C3 C4 H3 241.3 240.3
C4 C3 O1 P1 136.8 119.4
C5 C4 C3 O2 122.6 120.2
C5 C4 C3 H4 242.1 240.6
C3 C4 C5 C6 66.1 67.8
C3 C4 C5 O3 183.6 187.6
C3 C4 C5 H5 303.5 307.9
O2 C4 C3 H4 119.5 120.4
C3 C4 O2 HO2 180.0 300.0
O1 C3 C2 H2 75.2 77.2
C2 C3 O1 C4 125.5 120.6
C2 C3 O1 H3 241.2 240.3
C4 C3 O1 H3 115.7 119.7
O1 C3 C4 C5 67.8 70.6
O1 C3 C4 O2 305.2 310.4
O1 C3 C4 H4 185.7 190.0
C3 O1 P1 O6 65.0 305.0
C3 O1 P1 O7 304.6 65.0
C3 O1 P1 O8 182.2 185.0
H3 C3 C2 H2 316.1 317.4
C2 C3 H3 C4 238.9 239.2
C2 C3 H3 O1 118.2 119.7
C4 C3 H3 O1 239.3 240.6
H3 C3 C4 C5 186.5 190.3
H3 C3 C4 O2 63.9 70.1
H3 C3 C4 H4 304.4 309.7
H3 C3 O1 P1 21.2 359.7
C1 C6 C5 C4 312.5 310.3
C5 C4 C3 O1 67.8 70.6
C5 C4 C3 H3 186.5 190.3
C3 C4 C5 O2 243.6 240.0
C3 C4 C5 H4 123.9 119.5
O2 C4 C5 H4 240.3 239.5
C5 C4 O2 HO2 61.9 180.7
C6 C5 C4 O3 242.6 240.2
C6 C5 C4 H5 122.6 119.9
C4 C5 C6 H61 187.3 70.6
C4 C5 C6 H62 77.7 190.1
O3 C5 C4 H5 240.0 239.7
C4 C5 O3 C8 116.5 140.2
O2 C4 C3 O1 305.2 310.4
O2 C4 C3 H3 63.9 70.1
C3 C4 O2 C5 118.1 119.3
C3 C4 O2 H4 236.2 239.6
C5 C4 O2 H4 118.0 120.3
O2 C4 C5 C6 182.5 187.8
O2 C4 C5 O3 299.9 307.6
O2 C4 C5 H5 59.9 67.9
H4 C4 C3 O1 185.7 190.0
H4 C4 C3 H3 304.4 309.7
C3 C4 H4 C5 240.9 241.1
C3 C4 H4 O2 117.4 120.4
C5 C4 H4 O2 236.5 239.3
H4 C4 C5 C6 302.2 308.2
H4 C4 C5 O3 59.6 68.0
H4 C4 C5 H5 179.6 188.3
H4 C4 O2 HO2 303.8 60.4
C5 C6 C1 C7 193.5 197.2
C1 C6 C5 H61 125.2 239.8
C1 C6 C5 H62 234.8 120.2
C6 C5 C4 O2 182.5 187.8
C6 C5 C4 H4 302.2 308.2
C4 C5 C6 O3 118.4 119.8
C4 C5 C6 H5 238.3 240.1
O3 C5 C6 H5 119.9 120.4
C6 C5 O3 C8 231.7 259.4
H61 C6 C5 H62 109.5 240.4
O3 C5 C4 O2 299.9 307.6
O3 C5 C4 H4 59.6 68.0
C4 C5 O3 C6 244.8 240.8
C4 C5 O3 H5 122.0 120.3
C6 C5 O3 H5 237.2 239.6
O3 C5 C6 H61 68.8 310.8
O3 C5 C6 H62 319.3 70.4
C5 O3 C8 C9 311.7 53.8
C5 O3 C8 C10 182.3 293.8
C5 O3 C8 P2 61.5 173.8
H5 C5 C4 O2 59.9 67.9
H5 C5 C4 H4 179.6 188.3
C4 C5 H5 C6 118.2 119.3
C4 C5 H5 O3 238.6 239.7
C6 C5 H5 O3 120.4 120.4
H5 C5 C6 H61 308.9 190.4
H5 C5 C6 H62 199.4 310.0
H5 C5 O3 C8 354.5 19.9
H61 C6 C1 C7 318.8 76.9
C1 C6 H61 C5 231.3 120.7
C1 C6 H61 H62 115.7 240.3
H61 C6 C5 O3 68.8 310.8
H61 C6 C5 H5 308.9 190.4
C5 C6 H61 H62 244.3 119.6
H62 C6 C1 C7 68.3 317.3
C1 C6 H62 C5 128.7 239.4
C1 C6 H62 H61 244.3 119.7
H62 C6 C5 O3 319.3 70.4
H62 C6 C5 H5 199.4 310.0
C5 C6 H62 H61 115.7 240.3
C1 C7 O4 O5 179.5 180.0
O4 C7 O5 HO5 359.5 360.0
C1 C7 O5 O4 180.5 180.0
P1 O1 C3 H3 21.2 359.7
O6 P1 O1 O7 120.4 240.0
O6 P1 O1 O8 242.8 120.0
O7 P1 O1 O8 122.4 240.0
O1 P1 O7 HO7 180.0 60.0
O1 P1 O8 HO8 180.0 180.0
HO2 O2 C4 H4 303.8 60.4
C8 O3 C5 H5 354.5 19.9
C9 C8 O3 C10 129.5 120.0
C9 C8 O3 P2 250.2 240.0
O3 C8 C9 H91 180.0 53.1
O3 C8 C9 H92 305.3 173.1
O3 C8 C9 H93 54.8 293.0
C10 C8 O3 P2 120.7 120.0
O3 C8 C10 O9 323.6 0.0
O3 C8 C10 O10 136.4 180.0
O3 C8 P2 O11 160.1 178.7
O3 C8 P2 O12 43.3 58.6
O3 C8 P2 O13 278.4 298.6
O1 P1 O6 O7 246.3 120.0
O1 P1 O6 O8 107.8 240.0
O7 P1 O6 O8 221.6 120.0
O6 P1 O7 HO7 65.6 180.0
O6 P1 O8 HO8 291.4 60.1
O1 P1 O7 O6 114.4 240.0
O1 P1 O7 O8 250.6 120.0
O6 P1 O7 O8 136.2 240.0
O7 P1 O8 HO8 68.0 300.0
O1 P1 O8 O6 248.6 120.0
O1 P1 O8 O7 112.0 240.0
O6 P1 O8 O7 223.4 120.0
O8 P1 O7 HO7 289.4 300.0
HO7 O7 P1 O8 289.4 300.0
O3 C8 C9 C10 232.6 240.0
O3 C8 C9 P2 113.9 120.0
C10 C8 C9 P2 241.3 240.0
C9 C8 C10 O9 191.3 240.0
C9 C8 C10 O10 4.2 59.9
C9 C8 P2 O11 282.7 298.7
C9 C8 P2 O12 165.9 178.6
C9 C8 P2 O13 41.0 58.6
H91 C9 C8 H92 234.7 240.0
H91 C9 C8 H93 125.2 120.0
H92 C9 C8 H93 250.5 240.1
O3 C8 C10 C9 132.2 120.0
O3 C8 C10 P2 243.0 240.0
C9 C8 C10 P2 110.7 120.0
C10 C8 C9 H91 307.4 173.1
C10 C8 C9 H92 72.7 293.1
C10 C8 C9 H93 182.2 53.0
C10 C8 P2 O11 41.8 58.6
C10 C8 P2 O12 285.0 298.6
C10 C8 P2 O13 160.1 178.6
O9 C10 C8 O10 187.2 180.0
C8 C10 O10 H10 180.0 180.0
O3 C8 P2 C9 237.4 240.0
O3 C8 P2 C10 118.3 120.0
C9 C8 P2 C10 240.9 240.0
P2 C8 C9 H91 66.1 293.1
P2 C8 C9 H92 191.4 53.1
P2 C8 C9 H93 300.9 173.0
P2 C8 C10 O9 80.6 120.0
P2 C8 C10 O10 253.4 300.0
O11 P2 C8 O12 116.8 120.0
O11 P2 C8 O13 241.7 240.1
C8 P2 O11 H11 179.9 180.0
O12 P2 C8 O13 124.9 120.0
C8 P2 O13 H13 180.0 300.0
H91 C9 C8 C10 307.4 173.1
H91 C9 C8 P2 66.1 293.1
C8 C9 H91 H92 125.4 120.0
C8 C9 H91 H93 234.7 240.0
H92 C9 H91 H93 109.4 119.9
H92 C9 C8 C10 72.7 293.1
H92 C9 C8 P2 191.4 53.1
C8 C9 H92 H91 229.8 239.9
C8 C9 H92 H93 115.0 120.0
H91 C9 H92 H93 245.2 240.0
H93 C9 C8 C10 182.2 53.0
H93 C9 C8 P2 300.9 173.0
C8 C9 H93 H91 130.1 120.1
C8 C9 H93 H92 245.0 240.0
H91 C9 H93 H92 114.9 120.0
O9 C10 C8 P2 80.6 120.0
C8 C10 O9 O10 171.8 180.0
O9 C10 O10 H10 352.4 359.9
O10 C10 C8 P2 253.4 300.0
C8 C10 O10 O9 187.6 180.0
C8 P2 O11 O12 243.5 240.0
C8 P2 O11 O13 118.5 119.9
O12 P2 O11 O13 235.0 239.9
O11 P2 O13 H13 296.8 59.9
C8 P2 O12 O11 115.6 120.0
C8 P2 O12 O13 237.8 240.0
O11 P2 O12 O13 122.2 120.0
O12 P2 O11 H11 296.4 300.0
O12 P2 O13 H13 58.6 180.0
C8 P2 O13 O11 243.3 240.1
C8 P2 O13 O12 121.4 120.0
O11 P2 O13 O12 238.1 239.9
O13 P2 O11 H11 61.4 60.0
H11 O11 P2 O12 296.4 300.0
H11 O11 P2 O13 61.4 60.0