PDB Chemical Component SB7
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for SB7
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.420 |
1.382 |
| C1 |
C6 |
1.406 |
1.382 |
| C1 |
H1 |
1.103 |
1.081 |
| C2 |
C3 |
1.432 |
1.382 |
| C2 |
H2 |
1.103 |
1.081 |
| C3 |
C4 |
1.421 |
1.382 |
| C3 |
C7 |
1.508 |
1.507 |
| C4 |
C5 |
1.403 |
1.382 |
| C4 |
H4 |
1.103 |
1.080 |
| C5 |
C6 |
1.562 |
1.382 |
| C5 |
H5 |
1.103 |
1.081 |
| C6 |
H6 |
1.102 |
1.081 |
| C7 |
C8 |
1.535 |
1.530 |
| C7 |
H71 |
1.116 |
1.090 |
| C7 |
H72 |
1.115 |
1.090 |
| C8 |
C11 |
1.536 |
1.531 |
| C8 |
H81 |
1.114 |
1.091 |
| C8 |
H82 |
1.115 |
1.090 |
| C11 |
N14 |
1.468 |
1.469 |
| C11 |
H111 |
1.115 |
1.091 |
| C11 |
H112 |
1.116 |
1.090 |
| N14 |
O22 |
1.394 |
1.463 |
| N14 |
C24 |
1.358 |
1.469 |
| O22 |
H22 |
0.949 |
0.967 |
| C24 |
O25 |
1.416 |
1.430 |
| C24 |
H241 |
1.116 |
1.090 |
| C24 |
H242 |
1.115 |
1.090 |
| O25 |
H25 |
0.950 |
0.967 |
Bond Angles for SB7
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
120.1 |
120.0 |
| C2 |
C1 |
H1 |
120.4 |
120.0 |
| C1 |
C2 |
C3 |
121.9 |
120.0 |
| C1 |
C2 |
H2 |
118.6 |
120.0 |
| C6 |
C1 |
H1 |
119.5 |
120.0 |
| C1 |
C6 |
C5 |
118.4 |
120.0 |
| C1 |
C6 |
H6 |
115.7 |
120.0 |
| C3 |
C2 |
H2 |
119.4 |
120.0 |
| C2 |
C3 |
C4 |
120.1 |
120.0 |
| C2 |
C3 |
C7 |
121.1 |
120.0 |
| C4 |
C3 |
C7 |
118.8 |
120.0 |
| C3 |
C4 |
C5 |
121.2 |
120.0 |
| C3 |
C4 |
H4 |
120.0 |
120.0 |
| C3 |
C7 |
C8 |
112.7 |
109.4 |
| C3 |
C7 |
H71 |
111.0 |
109.5 |
| C3 |
C7 |
H72 |
111.0 |
109.5 |
| C5 |
C4 |
H4 |
118.8 |
120.0 |
| C4 |
C5 |
C6 |
118.2 |
120.0 |
| C4 |
C5 |
H5 |
115.7 |
120.0 |
| C6 |
C5 |
H5 |
126.0 |
120.0 |
| C5 |
C6 |
H6 |
125.8 |
120.0 |
| C8 |
C7 |
H71 |
111.0 |
109.5 |
| C8 |
C7 |
H72 |
111.1 |
109.5 |
| C7 |
C8 |
C11 |
111.9 |
109.5 |
| C7 |
C8 |
H81 |
111.3 |
109.5 |
| C7 |
C8 |
H82 |
111.3 |
109.5 |
| H71 |
C7 |
H72 |
99.3 |
109.5 |
| C11 |
C8 |
H81 |
111.3 |
109.4 |
| C11 |
C8 |
H82 |
111.3 |
109.5 |
| C8 |
C11 |
N14 |
109.4 |
109.5 |
| C8 |
C11 |
H111 |
112.3 |
109.4 |
| C8 |
C11 |
H112 |
112.3 |
109.5 |
| H81 |
C8 |
H82 |
99.1 |
109.5 |
| N14 |
C11 |
H111 |
112.3 |
109.5 |
| N14 |
C11 |
H112 |
112.3 |
109.5 |
| C11 |
N14 |
O22 |
120.4 |
106.7 |
| C11 |
N14 |
C24 |
118.3 |
106.7 |
| H111 |
C11 |
H112 |
98.1 |
109.5 |
| O22 |
N14 |
C24 |
121.3 |
106.7 |
| N14 |
O22 |
H22 |
120.3 |
106.8 |
| N14 |
C24 |
O25 |
124.9 |
109.5 |
| N14 |
C24 |
H241 |
106.7 |
109.4 |
| N14 |
C24 |
H242 |
106.8 |
109.5 |
| O25 |
C24 |
H241 |
106.8 |
109.5 |
| O25 |
C24 |
H242 |
106.8 |
109.5 |
| C24 |
O25 |
H25 |
124.9 |
106.8 |
| H241 |
C24 |
H242 |
102.8 |
109.5 |
Torsion Angles for SB7
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
H1 |
180.0 |
180.2 |
| C2 |
C1 |
C6 |
C5 |
360.0 |
359.8 |
| C2 |
C1 |
C6 |
H6 |
180.0 |
179.8 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
180.4 |
| C1 |
C2 |
C3 |
C4 |
360.0 |
359.5 |
| C1 |
C2 |
C3 |
C7 |
180.1 |
179.8 |
| C2 |
C1 |
C6 |
H1 |
180.0 |
179.8 |
| C6 |
C1 |
C2 |
C3 |
0.0 |
0.5 |
| C6 |
C1 |
C2 |
H2 |
180.1 |
180.0 |
| C4 |
C5 |
C6 |
C1 |
360.0 |
0.0 |
| C1 |
C6 |
C5 |
H5 |
179.9 |
180.0 |
| C5 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
| C2 |
C1 |
H1 |
C6 |
180.0 |
180.2 |
| H1 |
C1 |
C2 |
C3 |
180.0 |
180.2 |
| H1 |
C1 |
C2 |
H2 |
0.0 |
359.8 |
| H1 |
C1 |
C6 |
C5 |
180.0 |
180.0 |
| H1 |
C1 |
C6 |
H6 |
0.0 |
0.0 |
| C3 |
C2 |
C1 |
C6 |
0.0 |
0.5 |
| C3 |
C2 |
C1 |
H1 |
180.0 |
180.2 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
179.6 |
| C4 |
C3 |
C2 |
C7 |
179.8 |
179.7 |
| C2 |
C3 |
C4 |
C5 |
0.0 |
0.3 |
| C2 |
C3 |
C4 |
H4 |
180.1 |
180.2 |
| C2 |
C3 |
C7 |
C8 |
301.6 |
269.7 |
| C2 |
C3 |
C7 |
H71 |
66.8 |
149.7 |
| C2 |
C3 |
C7 |
H72 |
176.2 |
29.7 |
| H2 |
C2 |
C1 |
C6 |
180.1 |
180.0 |
| H2 |
C2 |
C1 |
H1 |
0.0 |
359.8 |
| C1 |
C2 |
H2 |
C3 |
180.0 |
180.4 |
| H2 |
C2 |
C3 |
C4 |
179.9 |
179.9 |
| H2 |
C2 |
C3 |
C7 |
0.1 |
0.2 |
| C4 |
C3 |
C2 |
H2 |
179.9 |
179.9 |
| C2 |
C3 |
C4 |
C7 |
180.2 |
180.3 |
| C4 |
C3 |
C7 |
C8 |
121.7 |
90.0 |
| C4 |
C3 |
C7 |
H71 |
247.0 |
330.0 |
| C4 |
C3 |
C7 |
H72 |
356.4 |
210.0 |
| C5 |
C4 |
C3 |
H4 |
179.9 |
180.1 |
| C3 |
C4 |
C5 |
C6 |
0.0 |
359.9 |
| C3 |
C4 |
C5 |
H5 |
180.1 |
179.9 |
| C7 |
C3 |
C2 |
H2 |
0.1 |
0.2 |
| C2 |
C3 |
C7 |
C4 |
179.8 |
179.7 |
| C7 |
C3 |
C4 |
C5 |
179.9 |
180.0 |
| C7 |
C3 |
C4 |
H4 |
359.9 |
359.9 |
| C8 |
C7 |
C3 |
H71 |
234.8 |
120.0 |
| C8 |
C7 |
C3 |
H72 |
125.3 |
240.0 |
| C3 |
C7 |
C8 |
C11 |
181.1 |
180.0 |
| C3 |
C7 |
C8 |
H81 |
306.3 |
60.1 |
| C3 |
C7 |
C8 |
H82 |
55.9 |
300.0 |
| H71 |
C7 |
C3 |
H72 |
250.6 |
120.0 |
| C1 |
C6 |
C5 |
C4 |
360.0 |
0.0 |
| C5 |
C4 |
C3 |
C7 |
179.9 |
180.0 |
| C3 |
C4 |
C5 |
H4 |
180.1 |
179.9 |
| C6 |
C5 |
C4 |
H5 |
179.9 |
180.0 |
| C4 |
C5 |
C6 |
H6 |
180.0 |
180.0 |
| H4 |
C4 |
C3 |
C7 |
359.9 |
359.9 |
| C3 |
C4 |
H4 |
C5 |
179.9 |
180.1 |
| H4 |
C4 |
C5 |
C6 |
180.0 |
180.0 |
| H4 |
C4 |
C5 |
H5 |
0.0 |
0.0 |
| C5 |
C6 |
C1 |
H1 |
180.0 |
180.0 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
H4 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
H5 |
180.1 |
180.0 |
| H5 |
C5 |
C4 |
H4 |
0.0 |
0.0 |
| C4 |
C5 |
H5 |
C6 |
179.9 |
180.0 |
| H5 |
C5 |
C6 |
H6 |
359.9 |
360.0 |
| H6 |
C6 |
C1 |
H1 |
0.0 |
0.0 |
| C1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
H5 |
359.9 |
360.0 |
| C3 |
C7 |
C8 |
H71 |
125.3 |
240.0 |
| C3 |
C7 |
C8 |
H72 |
234.7 |
120.0 |
| H71 |
C7 |
C8 |
H72 |
109.4 |
240.0 |
| C11 |
C8 |
C7 |
H81 |
234.8 |
119.9 |
| C11 |
C8 |
C7 |
H82 |
125.2 |
240.0 |
| C7 |
C8 |
C11 |
N14 |
101.2 |
180.0 |
| C7 |
C8 |
C11 |
H111 |
226.5 |
60.0 |
| C7 |
C8 |
C11 |
H112 |
335.9 |
300.0 |
| H81 |
C8 |
C7 |
H82 |
250.5 |
120.1 |
| C3 |
C7 |
H71 |
C8 |
233.8 |
120.0 |
| C3 |
C7 |
H71 |
H72 |
116.9 |
240.0 |
| C8 |
C7 |
H71 |
H72 |
243.1 |
120.0 |
| H71 |
C7 |
C8 |
C11 |
55.8 |
300.0 |
| H71 |
C7 |
C8 |
H81 |
181.0 |
180.1 |
| H71 |
C7 |
C8 |
H82 |
290.6 |
60.0 |
| C3 |
C7 |
H72 |
C8 |
126.2 |
240.0 |
| C3 |
C7 |
H72 |
H71 |
243.1 |
120.0 |
| C8 |
C7 |
H72 |
H71 |
116.9 |
240.0 |
| H72 |
C7 |
C8 |
C11 |
306.4 |
60.0 |
| H72 |
C7 |
C8 |
H81 |
71.6 |
300.1 |
| H72 |
C7 |
C8 |
H82 |
181.1 |
180.0 |
| C11 |
C8 |
C7 |
H71 |
55.8 |
300.0 |
| C11 |
C8 |
C7 |
H72 |
306.4 |
60.0 |
| C7 |
C8 |
C11 |
H81 |
125.3 |
240.0 |
| C7 |
C8 |
C11 |
H82 |
234.8 |
120.0 |
| H81 |
C8 |
C11 |
H82 |
109.5 |
240.0 |
| N14 |
C11 |
C8 |
H111 |
234.7 |
120.1 |
| N14 |
C11 |
C8 |
H112 |
125.3 |
240.0 |
| C8 |
C11 |
N14 |
O22 |
88.7 |
288.8 |
| C8 |
C11 |
N14 |
C24 |
269.1 |
175.0 |
| H111 |
C11 |
C8 |
H112 |
250.6 |
119.9 |
| H81 |
C8 |
C7 |
H71 |
181.0 |
180.1 |
| H81 |
C8 |
C7 |
H72 |
71.6 |
300.1 |
| C7 |
C8 |
H81 |
C11 |
234.4 |
120.0 |
| C7 |
C8 |
H81 |
H82 |
117.2 |
239.9 |
| C11 |
C8 |
H81 |
H82 |
242.8 |
120.0 |
| H81 |
C8 |
C11 |
N14 |
335.9 |
300.0 |
| H81 |
C8 |
C11 |
H111 |
101.2 |
180.0 |
| H81 |
C8 |
C11 |
H112 |
210.6 |
60.0 |
| H82 |
C8 |
C7 |
H71 |
290.6 |
60.0 |
| H82 |
C8 |
C7 |
H72 |
181.1 |
180.0 |
| C7 |
C8 |
H82 |
C11 |
125.6 |
240.0 |
| C7 |
C8 |
H82 |
H81 |
242.8 |
120.1 |
| C11 |
C8 |
H82 |
H81 |
117.2 |
240.1 |
| H82 |
C8 |
C11 |
N14 |
226.4 |
60.0 |
| H82 |
C8 |
C11 |
H111 |
351.7 |
299.9 |
| H82 |
C8 |
C11 |
H112 |
101.1 |
180.0 |
| N14 |
C11 |
C8 |
H81 |
335.9 |
300.0 |
| N14 |
C11 |
C8 |
H82 |
226.4 |
60.0 |
| C8 |
C11 |
N14 |
H111 |
125.3 |
240.0 |
| C8 |
C11 |
N14 |
H112 |
234.7 |
120.0 |
| H111 |
C11 |
N14 |
H112 |
109.4 |
240.0 |
| O22 |
N14 |
C11 |
C24 |
179.6 |
113.8 |
| C11 |
N14 |
O22 |
H22 |
179.9 |
66.2 |
| C11 |
N14 |
C24 |
O25 |
179.6 |
290.0 |
| C11 |
N14 |
C24 |
H241 |
304.8 |
170.0 |
| C11 |
N14 |
C24 |
H242 |
54.3 |
50.0 |
| H111 |
C11 |
C8 |
H81 |
101.2 |
180.0 |
| H111 |
C11 |
C8 |
H82 |
351.7 |
299.9 |
| C8 |
C11 |
H111 |
N14 |
236.3 |
120.0 |
| C8 |
C11 |
H111 |
H112 |
118.1 |
240.1 |
| N14 |
C11 |
H111 |
H112 |
241.8 |
120.0 |
| H111 |
C11 |
N14 |
O22 |
323.4 |
48.8 |
| H111 |
C11 |
N14 |
C24 |
143.8 |
295.0 |
| H112 |
C11 |
C8 |
H81 |
210.6 |
60.0 |
| H112 |
C11 |
C8 |
H82 |
101.1 |
180.0 |
| C8 |
C11 |
H112 |
N14 |
123.7 |
240.0 |
| C8 |
C11 |
H112 |
H111 |
241.9 |
119.9 |
| N14 |
C11 |
H112 |
H111 |
118.2 |
239.9 |
| H112 |
C11 |
N14 |
O22 |
214.0 |
168.8 |
| H112 |
C11 |
N14 |
C24 |
34.4 |
55.0 |
| O22 |
N14 |
C11 |
H111 |
323.4 |
48.8 |
| O22 |
N14 |
C11 |
H112 |
214.0 |
168.8 |
| C11 |
N14 |
O22 |
C24 |
180.4 |
246.2 |
| O22 |
N14 |
C24 |
O25 |
360.0 |
176.2 |
| O22 |
N14 |
C24 |
H241 |
125.2 |
56.2 |
| O22 |
N14 |
C24 |
H242 |
234.7 |
296.2 |
| C24 |
N14 |
C11 |
H111 |
143.8 |
295.0 |
| C24 |
N14 |
C11 |
H112 |
34.4 |
55.0 |
| C11 |
N14 |
C24 |
O22 |
179.6 |
113.8 |
| C24 |
N14 |
O22 |
H22 |
359.5 |
179.9 |
| O25 |
C24 |
N14 |
H241 |
234.8 |
120.0 |
| O25 |
C24 |
N14 |
H242 |
125.3 |
240.0 |
| N14 |
C24 |
O25 |
H25 |
179.9 |
180.0 |
| H241 |
C24 |
N14 |
H242 |
250.5 |
120.0 |
| H22 |
O22 |
N14 |
C24 |
359.5 |
179.9 |
| N14 |
C24 |
O25 |
H241 |
125.2 |
240.0 |
| N14 |
C24 |
O25 |
H242 |
234.7 |
120.0 |
| H241 |
C24 |
O25 |
H242 |
109.4 |
240.0 |
| N14 |
C24 |
H241 |
O25 |
224.4 |
120.0 |
| N14 |
C24 |
H241 |
H242 |
112.2 |
240.0 |
| O25 |
C24 |
H241 |
H242 |
247.8 |
120.0 |
| H241 |
C24 |
O25 |
H25 |
54.7 |
300.0 |
| N14 |
C24 |
H242 |
O25 |
135.6 |
240.0 |
| N14 |
C24 |
H242 |
H241 |
247.8 |
120.0 |
| O25 |
C24 |
H242 |
H241 |
112.2 |
240.0 |
| H242 |
C24 |
O25 |
H25 |
305.2 |
60.0 |
| H25 |
O25 |
C24 |
H241 |
54.7 |
300.0 |
| H25 |
O25 |
C24 |
H242 |
305.2 |
60.0 |