PDB Chemical Component SB5

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for SB5

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
FA1 CA2 1.363 1.352
CA1 CA2 1.421 1.385
CA1 CA6 1.417 1.379
CA1 HCA1 1.103 1.080
CA2 CA3 1.416 1.385
CA3 CA4 1.408 1.380
CA3 HCA3 1.103 1.080
CA4 CA5 1.439 1.394
CA4 HCA4 1.103 1.080
CA5 CA6 1.430 1.394
CA5 CC3 1.427 1.482
CA6 HCA6 1.102 1.080
CB1 NB2 1.356 1.325
CB1 CB6 1.423 1.381
CB1 HCB1 1.103 1.080
NB2 CB3 1.325 1.324
CB3 NB4 1.331 1.323
CB3 NB7 1.305 1.384
NB4 CB5 1.377 1.334
CB5 CB6 1.456 1.402
CB5 CC2 1.459 1.473
CB6 HCB6 1.102 1.081
NB7 HN71 1.020 0.971
NB7 HN72 1.019 0.969
NC1 CC2 1.456 1.378
NC1 CC5 1.389 1.349
NC1 CD1 1.530 1.466
CC2 CC3 1.507 1.383
CC3 NC4 1.403 1.344
NC4 CC5 1.361 1.305
CC5 HCC5 1.103 1.080
CD1 CE1 1.553 1.530
CD1 HCD1 1.116 1.089
CD1 HCD2 1.115 1.090
CE1 CE2 1.532 1.530
CE1 CE3 1.535 1.530
CE1 HCE1 1.114 1.090
CE2 CE3 1.521 1.530
CE2 HC21 1.115 1.090
CE2 HC22 1.115 1.089
CE3 HC31 1.115 1.091
CE3 HC32 1.115 1.090

Bond Angles for SB5

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
FA1 CA2 CA1 120.0 119.9
FA1 CA2 CA3 119.6 119.9
CA2 CA1 CA6 119.9 120.1
CA2 CA1 HCA1 120.2 119.9
CA1 CA2 CA3 120.4 120.2
CA6 CA1 HCA1 119.9 119.9
CA1 CA6 CA5 120.7 119.9
CA1 CA6 HCA6 119.2 120.1
CA2 CA3 CA4 119.7 120.1
CA2 CA3 HCA3 120.5 120.0
CA4 CA3 HCA3 119.9 119.9
CA3 CA4 CA5 121.3 119.9
CA3 CA4 HCA4 118.2 120.0
CA5 CA4 HCA4 120.5 120.1
CA4 CA5 CA6 118.0 119.8
CA4 CA5 CC3 119.7 120.1
CA6 CA5 CC3 122.3 120.1
CA5 CA6 HCA6 120.1 120.0
CA5 CC3 CC2 130.8 126.3
CA5 CC3 NC4 119.9 126.3
NB2 CB1 CB6 121.7 119.3
NB2 CB1 HCB1 116.6 120.3
CB1 NB2 CB3 118.2 121.0
CB6 CB1 HCB1 121.6 120.3
CB1 CB6 CB5 116.0 118.4
CB1 CB6 HCB6 120.9 120.8
NB2 CB3 NB4 125.9 121.8
NB2 CB3 NB7 116.5 119.1
NB4 CB3 NB7 117.6 119.1
CB3 NB4 CB5 119.1 120.6
CB3 NB7 HN71 116.6 120.0
CB3 NB7 HN72 109.7 120.0
NB4 CB5 CB6 119.0 118.8
NB4 CB5 CC2 119.4 120.6
CB6 CB5 CC2 121.6 120.6
CB5 CB6 HCB6 123.1 120.8
CB5 CC2 NC1 122.9 127.0
CB5 CC2 CC3 128.4 127.0
HN71 NB7 HN72 109.7 120.0
CC2 NC1 CC5 99.0 107.4
CC2 NC1 CD1 133.2 126.3
NC1 CC2 CC3 107.9 106.1
CC5 NC1 CD1 127.1 126.3
NC1 CC5 NC4 122.7 109.6
NC1 CC5 HCC5 119.7 125.2
NC1 CD1 CE1 114.0 109.5
NC1 CD1 HCD1 110.5 109.5
NC1 CD1 HCD2 110.6 109.4
CC2 CC3 NC4 109.1 107.4
CC3 NC4 CC5 101.3 109.6
NC4 CC5 HCC5 117.6 125.2
CE1 CD1 HCD1 110.5 109.5
CE1 CD1 HCD2 110.5 109.5
CD1 CE1 CE2 118.4 117.5
CD1 CE1 CE3 117.7 117.5
CD1 CE1 HCE1 92.3 115.6
HCD1 CD1 HCD2 99.7 109.5
CE2 CE1 CE3 59.5 60.0
CE2 CE1 HCE1 135.0 117.5
CE1 CE2 CE3 60.3 60.0
CE1 CE2 HC21 134.8 117.5
CE1 CE2 HC22 134.8 117.5
CE3 CE1 HCE1 135.5 117.5
CE1 CE3 CE2 60.2 60.0
CE1 CE3 HC31 134.9 117.5
CE1 CE3 HC32 134.9 117.5
CE3 CE2 HC21 134.8 117.5
CE3 CE2 HC22 134.8 117.5
CE2 CE3 HC31 134.8 117.5
CE2 CE3 HC32 134.9 117.5
HC21 CE2 HC22 70.8 115.6
HC31 CE3 HC32 70.7 115.5

Torsion Angles for SB5

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
FA1 CA2 CA1 CA6 179.7 179.7
FA1 CA2 CA1 HCA1 359.7 0.0
CA1 CA2 FA1 CA3 180.1 180.0
FA1 CA2 CA3 CA4 180.3 180.0
FA1 CA2 CA3 HCA3 0.3 0.0
FA1 CA2 CA1 CA3 179.9 180.0
CA6 CA1 CA2 HCA1 180.0 179.7
CA2 CA1 CA6 CA5 0.1 0.6
CA2 CA1 CA6 HCA6 180.0 180.1
CA1 CA2 CA3 CA4 0.1 0.0
CA1 CA2 CA3 HCA3 180.2 180.0
CA2 CA1 CA6 HCA1 180.0 180.3
CA6 CA1 CA2 CA3 359.9 359.7
CA4 CA5 CA6 CA1 0.0 359.4
CA1 CA6 CA5 CC3 180.6 179.7
CA5 CA6 CA1 HCA6 180.0 180.5
CA2 CA1 HCA1 CA6 180.0 179.7
HCA1 CA1 CA2 CA3 179.8 180.0
HCA1 CA1 CA6 CA5 180.1 180.3
HCA1 CA1 CA6 HCA6 0.0 359.8
FA1 CA2 CA3 CA1 180.1 180.0
CA3 CA2 CA1 CA6 359.9 359.7
CA3 CA2 CA1 HCA1 179.8 180.0
CA4 CA3 CA2 HCA3 180.0 180.0
CA2 CA3 CA4 CA5 359.9 359.9
CA2 CA3 CA4 HCA4 180.0 180.1
CA2 CA3 CA4 HCA3 180.0 180.0
CA5 CA4 CA3 HCA4 179.9 179.9
CA3 CA4 CA5 CA6 360.0 0.3
CA3 CA4 CA5 CC3 179.4 180.0
CA2 CA3 HCA3 CA4 180.0 180.0
HCA3 CA3 CA4 CA5 179.9 180.0
HCA3 CA3 CA4 HCA4 360.0 0.1
CA1 CA6 CA5 CA4 0.0 359.4
CA5 CA4 CA3 HCA3 179.9 180.0
CA3 CA4 CA5 HCA4 180.1 180.1
CA6 CA5 CA4 CC3 180.5 180.3
CA4 CA5 CA6 HCA6 180.1 179.9
CA4 CA5 CC3 CC2 73.5 139.6
CA4 CA5 CC3 NC4 259.6 320.0
HCA4 CA4 CA3 HCA3 360.0 0.1
CA3 CA4 HCA4 CA5 179.9 179.9
HCA4 CA4 CA5 CA6 179.9 180.2
HCA4 CA4 CA5 CC3 359.4 359.9
CA5 CA6 CA1 HCA1 180.1 180.3
CA1 CA6 CA5 HCA6 180.0 179.5
CA6 CA5 CA4 HCA4 179.9 180.2
CA4 CA5 CA6 CC3 179.4 179.7
CA6 CA5 CC3 CC2 253.0 319.3
CA6 CA5 CC3 NC4 79.1 139.7
CC3 CA5 CA4 HCA4 359.4 359.9
CA4 CA5 CC3 CA6 180.6 180.3
CC3 CA5 CA6 HCA6 0.6 0.2
CB5 CC2 CC3 CA5 356.1 0.2
NC1 CC2 CC3 CA5 186.7 180.0
CC2 CC3 CA5 NC4 173.9 179.6
CA5 CC3 NC4 CC5 174.4 180.0
HCA6 CA6 CA1 HCA1 0.0 359.8
CA1 CA6 HCA6 CA5 180.0 180.5
HCA6 CA6 CA5 CC3 0.6 0.2
CB6 CB1 NB2 HCB1 180.0 180.0
NB2 CB1 CB6 CB5 359.6 359.9
NB2 CB1 CB6 HCB6 179.6 180.0
CB1 NB2 CB3 NB4 360.0 0.3
CB1 NB2 CB3 NB7 180.2 180.0
NB2 CB1 CB6 HCB1 180.0 180.0
CB6 CB1 NB2 CB3 0.2 0.0
NB4 CB5 CB6 CB1 0.4 359.8
CB1 CB6 CB5 CC2 179.7 180.0
CB5 CB6 CB1 HCB6 180.0 180.0
NB2 CB1 HCB1 CB6 180.0 180.0
HCB1 CB1 NB2 CB3 180.2 180.0
HCB1 CB1 CB6 CB5 179.6 180.0
HCB1 CB1 CB6 HCB6 359.6 0.0
CB3 NB2 CB1 CB6 0.2 0.0
CB3 NB2 CB1 HCB1 180.2 180.0
NB4 CB3 NB2 NB7 179.8 180.3
NB2 CB3 NB4 CB5 0.0 359.5
NB2 CB3 NB7 HN71 180.0 0.0
NB2 CB3 NB7 HN72 54.7 179.7
NB2 CB3 NB4 NB7 180.2 179.7
NB4 CB3 NB7 HN71 0.3 179.8
NB4 CB3 NB7 HN72 234.9 359.4
CB3 NB4 CB5 CB6 359.8 0.5
CB3 NB4 CB5 CC2 180.4 180.3
NB2 CB3 NB7 NB4 179.8 180.3
NB7 CB3 NB4 CB5 179.8 179.7
HN71 NB7 CB3 HN72 125.3 180.3
CB1 CB6 CB5 NB4 0.4 359.8
CB5 NB4 CB3 NB7 179.8 179.7
CB6 CB5 NB4 CC2 179.4 180.2
NB4 CB5 CB6 HCB6 180.4 179.8
NB4 CB5 CC2 NC1 28.8 140.2
NB4 CB5 CC2 CC3 220.8 320.0
CB5 CB6 CB1 HCB1 179.6 180.0
CB1 CB6 CB5 HCB6 180.0 180.0
NB4 CB5 CB6 CC2 180.6 179.8
CB6 CB5 CC2 NC1 209.4 320.0
CB6 CB5 CC2 CC3 41.4 139.7
CA5 CC3 CC2 CB5 356.1 0.2
NB4 CB5 CC2 CB6 179.4 180.2
CC2 CB5 CB6 HCB6 359.7 360.0
CB5 CC2 NC1 CC5 189.0 180.0
CB5 CC2 NC1 CD1 359.7 0.0
NC1 CC2 CB5 CC3 168.0 180.3
CB5 CC2 CC3 NC4 170.5 179.8
HCB6 CB6 CB1 HCB1 359.6 0.0
CB1 CB6 HCB6 CB5 180.0 180.0
HCB6 CB6 CB5 CC2 359.7 360.0
CB3 NB7 HN71 HN72 234.7 179.7
CB3 NB7 HN72 HN71 129.2 180.3
CA5 CC3 CC2 NC1 186.7 180.0
CB5 CC2 NC1 CC3 189.9 179.8
CC5 NC1 CC2 CD1 189.3 180.0
CC2 NC1 CC5 NC4 0.5 360.0
CC2 NC1 CC5 HCC5 180.4 180.0
CC2 NC1 CD1 CE1 211.7 270.0
CC2 NC1 CD1 HCD1 337.0 30.0
CC2 NC1 CD1 HCD2 86.5 150.0
NC1 CC2 CC3 NC4 1.1 359.6
CC2 NC1 CC5 CD1 171.5 180.0
CC5 NC1 CC2 CC3 359.1 0.3
CC5 NC1 CD1 CE1 20.2 90.0
CC5 NC1 CD1 HCD1 145.5 210.0
CC5 NC1 CD1 HCD2 254.9 330.0
CC3 NC4 CC5 NC1 0.1 359.8
NC4 CC5 NC1 HCC5 180.1 179.9
CC2 NC1 CD1 CC5 191.5 180.0
CD1 NC1 CC2 CC3 169.9 180.2
CD1 NC1 CC5 NC4 189.0 180.0
CD1 NC1 CC5 HCC5 8.9 0.0
CE1 CD1 NC1 HCD1 234.8 240.0
CE1 CD1 NC1 HCD2 125.3 120.0
NC1 CD1 CE1 CE2 144.5 180.0
NC1 CD1 CE1 CE3 76.1 248.6
NC1 CD1 CE1 HCE1 290.2 34.3
HCD1 CD1 NC1 HCD2 250.5 240.0
CA5 CC3 CC2 NC4 185.6 180.4
CB5 CC2 CC3 NC1 169.4 180.2
CC3 CC2 NC1 CC5 359.1 0.3
CC3 CC2 NC1 CD1 169.9 180.2
CC2 CC3 NC4 CC5 359.3 0.4
CA5 CC3 NC4 CC2 175.1 179.6
NC1 CC5 NC4 CC3 0.1 359.8
CC3 NC4 CC5 HCC5 180.2 179.7
NC4 CC5 NC1 CD1 189.0 180.0
NC1 CC5 NC4 HCC5 180.0 180.1
HCC5 CC5 NC1 CD1 8.9 0.0
NC1 CC5 HCC5 NC4 180.0 179.9
NC1 CD1 CE1 HCD1 125.2 120.0
NC1 CD1 CE1 HCD2 234.7 240.1
HCD1 CD1 CE1 HCD2 109.5 120.0
CE2 CE1 CD1 CE3 68.4 291.4
CE2 CE1 CD1 HCE1 214.3 145.8
CD1 CE1 CE2 CE3 252.9 107.5
CD1 CE1 CE2 HC21 18.1 214.9
CD1 CE1 CE2 HC22 127.7 360.0
CE3 CE1 CD1 HCE1 145.9 214.3
CD1 CE1 CE3 CE2 108.3 252.5
CD1 CE1 CE3 HC31 233.5 0.0
CD1 CE1 CE3 HC32 343.0 145.0
NC1 CD1 HCD1 CE1 232.8 240.0
NC1 CD1 HCD1 HCD2 116.4 119.9
CE1 CD1 HCD1 HCD2 243.6 239.9
HCD1 CD1 CE1 CE2 19.2 60.0
HCD1 CD1 CE1 CE3 310.9 128.6
HCD1 CD1 CE1 HCE1 164.9 274.3
NC1 CD1 HCD2 CE1 127.2 120.0
NC1 CD1 HCD2 HCD1 243.6 240.0
CE1 CD1 HCD2 HCD1 116.4 120.0
HCD2 CD1 CE1 CE2 269.8 300.0
HCD2 CD1 CE1 CE3 201.4 8.6
HCD2 CD1 CE1 HCE1 55.5 154.2
CE2 CE1 CD1 HCD1 19.2 60.0
CE2 CE1 CD1 HCD2 269.8 300.0
CD1 CE1 CE2 HCE1 127.3 214.9
CE3 CE1 CE2 HCE1 234.4 107.5
CE2 CE1 CE3 CE2 360.0 -0.0
CE2 CE1 CE3 HC31 125.2 107.5
CE2 CE1 CE3 HC32 234.7 252.5
CE3 CE2 CE1 HC21 234.8 252.5
CE3 CE2 CE1 HC22 125.2 107.5
CE1 CE2 CE3 HC31 234.7 252.5
CE1 CE2 CE3 HC32 125.3 107.5
HC21 CE2 CE1 HC22 250.4 215.0
CE3 CE1 CD1 HCD1 310.9 128.6
CE3 CE1 CD1 HCD2 201.4 8.6
CD1 CE1 CE3 HCE1 233.1 145.0
CE2 CE1 CE3 HCE1 124.8 252.5
CE3 CE1 CE2 CE3 -0.0 360.0
CE3 CE1 CE2 HC21 125.2 107.5
CE3 CE1 CE2 HC22 234.8 252.5
CE1 CE3 CE2 HC21 234.7 252.5
CE1 CE3 CE2 HC22 125.3 107.5
CE2 CE3 CE1 HC31 234.8 252.5
CE2 CE3 CE1 HC32 125.3 107.5
HC31 CE3 CE1 HC32 250.5 215.0
HCE1 CE1 CD1 HCD1 164.9 274.3
HCE1 CE1 CD1 HCD2 55.5 154.2
CD1 CE1 HCE1 CE2 224.5 145.7
CD1 CE1 HCE1 CE3 134.9 214.3
CE2 CE1 HCE1 CE3 270.4 68.6
HCE1 CE1 CE2 CE3 125.6 252.5
HCE1 CE1 CE2 HC21 250.8 0.0
HCE1 CE1 CE2 HC22 0.4 145.0
HCE1 CE1 CE3 CE2 235.2 107.5
HCE1 CE1 CE3 HC31 0.4 215.0
HCE1 CE1 CE3 HC32 110.0 0.0
CE3 CE2 CE1 CE3 -0.0 360.0
CE3 CE2 CE1 HCE1 125.6 252.5
CE1 CE2 CE3 HC21 125.3 107.5
CE1 CE2 CE3 HC22 234.7 252.5
CE2 CE3 CE1 HCE1 235.2 107.5
CE1 CE3 CE2 HC31 125.3 107.5
CE1 CE3 CE2 HC32 234.7 252.5
HC21 CE2 CE3 HC22 109.4 145.0
HC31 CE3 CE2 HC32 109.4 145.0
HC21 CE2 CE1 CE3 125.2 107.5
HC21 CE2 CE1 HCE1 250.8 0.0
CE1 CE2 HC21 CE3 269.8 291.4
CE1 CE2 HC21 HC22 135.0 145.7
CE3 CE2 HC21 HC22 225.2 214.3
HC21 CE2 CE3 HC31 109.4 145.0
HC21 CE2 CE3 HC32 360.0 0.0
HC22 CE2 CE1 CE3 234.8 252.5
HC22 CE2 CE1 HCE1 0.4 145.0
CE1 CE2 HC22 CE3 90.2 68.6
CE1 CE2 HC22 HC21 225.0 214.3
CE3 CE2 HC22 HC21 134.8 145.7
HC22 CE2 CE3 HC31 0.0 360.0
HC22 CE2 CE3 HC32 250.6 215.0
HC31 CE3 CE1 HCE1 0.4 215.0
CE1 CE3 HC31 CE2 269.9 291.4
CE1 CE3 HC31 HC32 135.0 145.7
HC31 CE3 CE2 HC21 109.4 145.0
HC31 CE3 CE2 HC22 0.0 360.0
CE2 CE3 HC31 HC32 225.1 214.3
HC32 CE3 CE1 HCE1 110.0 0.0
CE1 CE3 HC32 CE2 90.1 68.6
CE1 CE3 HC32 HC31 225.0 214.3
HC32 CE3 CE2 HC21 360.0 0.0
HC32 CE3 CE2 HC22 250.6 215.0
CE2 CE3 HC32 HC31 134.9 145.7